RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 CCDC27Q2M243 656 aa9.38□□□□□ -0.91
YBX3-209ENST00000540747 OTOP1Q7RTM1 612 aa9.38□□□□□ -0.91
YBX3-209ENST00000540747 IFNL1Q8IU54 200 aa9.38□□□□□ -0.91
YBX3-209ENST00000540747 WNK4Q96J92 1243 aa9.38□□□□□ -0.91
YBX3-209ENST00000540747 CLMNQ96JQ2 1002 aa9.38□□□□□ -0.91
YBX3-209ENST00000540747 ANGEL1Q9UNK9 670 aaKnown RBP9.38□□□□□ -0.91
YBX3-209ENST00000540747 PPP2R3BQ9Y5P8 575 aa9.38□□□□□ -0.91
YBX3-209ENST00000540747 TESPA1A2RU30 521 aaPredicted RBP9.37□□□□□ -0.91
YBX3-209ENST00000540747 SPDYE2BA6NHP3 402 aa9.37□□□□□ -0.91
YBX3-209ENST00000540747 SPDYE6P0CI01 402 aa9.37□□□□□ -0.91
YBX3-209ENST00000540747 INHBEP58166 350 aa9.37□□□□□ -0.91
YBX3-209ENST00000540747 PRKG1Q13976 671 aa9.37□□□□□ -0.91
YBX3-209ENST00000540747 LINS1Q8NG48 757 aa9.37□□□□□ -0.91
YBX3-209ENST00000540747 FBXW7Q969H0 707 aa9.37□□□□□ -0.91
YBX3-209ENST00000540747 ARMC5Q96C12 935 aa9.37□□□□□ -0.91
YBX3-209ENST00000540747 ECM29Q5VYK3 1845 aa9.37□□□□□ -0.91
YBX3-209ENST00000540747 RANBP2P49792 3224 aaKnown RBP9.37□□□□□ -0.91
YBX3-209ENST00000540747 IL16Q14005 1332 aa9.36□□□□□ -0.91
YBX3-209ENST00000540747 POTEFA5A3E0 1075 aa9.36□□□□□ -0.91
YBX3-209ENST00000540747 FOXO4P98177 505 aa9.36□□□□□ -0.91
YBX3-209ENST00000540747 FLIIQ13045 1269 aa9.36□□□□□ -0.91
YBX3-209ENST00000540747 DLGAP5Q15398 846 aa9.36□□□□□ -0.91
YBX3-209ENST00000540747 TWISTNBQ3B726 338 aaPredicted RBP9.36□□□□□ -0.91
YBX3-209ENST00000540747 NCBP3Q53F19 620 aaKnown RBP9.36□□□□□ -0.91
YBX3-209ENST00000540747 WWC1Q8IX03 1113 aa9.36□□□□□ -0.91
YBX3-209ENST00000540747 DNAAF4Q8WXU2 420 aa9.36□□□□□ -0.91
YBX3-209ENST00000540747 PTPN18Q99952 460 aa9.36□□□□□ -0.91
YBX3-209ENST00000540747 STK31Q9BXU1 1019 aa9.36□□□□□ -0.91
YBX3-209ENST00000540747 OTOFQ9HC10 1997 aa9.35□□□□□ -0.91
YBX3-209ENST00000540747 USP2O75604 605 aaPredicted RBP9.35□□□□□ -0.91
YBX3-209ENST00000540747 SLC4A2P04920 1241 aa9.35□□□□□ -0.91
YBX3-209ENST00000540747 CRHR2Q13324 411 aa9.35□□□□□ -0.91
YBX3-209ENST00000540747 CFAP100Q494V2 611 aa9.35□□□□□ -0.91
YBX3-209ENST00000540747 NBPF12Q5TAG4 269 aaPredicted RBP9.35□□□□□ -0.91
YBX3-209ENST00000540747 INTS3Q68E01 1043 aaKnown RBP9.35□□□□□ -0.91
YBX3-209ENST00000540747 SLC10A4Q96EP9 437 aa9.35□□□□□ -0.91
YBX3-209ENST00000540747 PRMT6Q96LA8 375 aaPredicted RBP9.35□□□□□ -0.91
YBX3-209ENST00000540747 TEPSINQ96N21 525 aa9.35□□□□□ -0.91
YBX3-209ENST00000540747 MPHOSPH8Q99549 860 aa9.35□□□□□ -0.91
YBX3-209ENST00000540747 PTPN22Q9Y2R2 807 aa9.35□□□□□ -0.91
YBX3-209ENST00000540747 TRIM17Q9Y577 477 aa9.35□□□□□ -0.91
YBX3-209ENST00000540747 FAM205AQ6ZU69 1335 aa9.34□□□□□ -0.91
YBX3-209ENST00000540747 ANKRD18BA2A2Z9 1011 aa9.34□□□□□ -0.91
YBX3-209ENST00000540747 PPP1R12BO60237 982 aaPredicted RBP9.34□□□□□ -0.91
YBX3-209ENST00000540747 TAF5LO75529 589 aa9.34□□□□□ -0.91
YBX3-209ENST00000540747 SPDYE2Q495Y8 402 aa9.34□□□□□ -0.91
YBX3-209ENST00000540747 CCDC184Q52MB2 194 aa9.34□□□□□ -0.91
YBX3-209ENST00000540747 HABP4Q5JVS0 413 aaKnown RBP9.34□□□□□ -0.91
YBX3-209ENST00000540747 EPHA10Q5JZY3 1008 aa9.34□□□□□ -0.91
YBX3-209ENST00000540747 HELBQ8NG08 1087 aaPredicted RBP9.34□□□□□ -0.91
YBX3-209ENST00000540747 GCC1Q96CN9 775 aa9.34□□□□□ -0.91
YBX3-209ENST00000540747 MS4A4AQ96JQ5 239 aa9.34□□□□□ -0.91
YBX3-209ENST00000540747 MYH16Q9H6N6 1097 aa9.34□□□□□ -0.91
YBX3-209ENST00000540747 TRIOBPQ9H2D6 2365 aa9.34□□□□□ -0.91
YBX3-209ENST00000540747 FANCIQ9NVI1 1328 aa9.33□□□□□ -0.92
YBX3-209ENST00000540747 CLRN2A0PK11 232 aa9.33□□□□□ -0.92
YBX3-209ENST00000540747 KCNJ4P48050 445 aa9.33□□□□□ -0.92
YBX3-209ENST00000540747 RASA3Q14644 834 aa9.33□□□□□ -0.92
YBX3-209ENST00000540747 SUPT20HL1Q3ZLR7 823 aa9.33□□□□□ -0.92
YBX3-209ENST00000540747 BEND3Q5T5X7 828 aa9.33□□□□□ -0.92
YBX3-209ENST00000540747 ZNF804AQ7Z570 1209 aa9.33□□□□□ -0.92
YBX3-209ENST00000540747 CDAN1Q8IWY9 1227 aa9.33□□□□□ -0.92
YBX3-209ENST00000540747 CD99L2Q8TCZ2 262 aa9.33□□□□□ -0.92
YBX3-209ENST00000540747 ERO1AQ96HE7 468 aa9.33□□□□□ -0.92
YBX3-209ENST00000540747 CACNA1FO60840 1977 aa9.33□□□□□ -0.92
YBX3-209ENST00000540747 ARAP2Q8WZ64 1704 aa9.33□□□□□ -0.92
YBX3-209ENST00000540747 SZT2Q5T011 3432 aa9.32□□□□□ -0.92
YBX3-209ENST00000540747 F8W031 263 aaPredicted RBP9.32□□□□□ -0.92
YBX3-209ENST00000540747 VAMP4O75379 141 aa9.32□□□□□ -0.92
YBX3-209ENST00000540747 IREB2P48200 963 aaKnown RBP9.32□□□□□ -0.92
YBX3-209ENST00000540747 IFIT5Q13325 482 aaKnown RBP9.32□□□□□ -0.92
YBX3-209ENST00000540747 FKBP5Q13451 457 aaPredicted RBP9.32□□□□□ -0.92
YBX3-209ENST00000540747 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.32□□□□□ -0.92
YBX3-209ENST00000540747 ANKRD13AQ8IZ07 590 aa9.32□□□□□ -0.92
YBX3-209ENST00000540747 TDRD7Q8NHU6 1098 aaKnown RBP9.32□□□□□ -0.92
YBX3-209ENST00000540747 BRI3BPQ8WY22 251 aa9.32□□□□□ -0.92
YBX3-209ENST00000540747 ZNF333Q96JL9 665 aa9.32□□□□□ -0.92
YBX3-209ENST00000540747 ZNF70Q9UC06 446 aaPredicted RBP9.32□□□□□ -0.92
YBX3-209ENST00000540747 SERPINA10Q9UK55 444 aa9.32□□□□□ -0.92
YBX3-209ENST00000540747 MYO1BO43795 1136 aa9.31□□□□□ -0.92
YBX3-209ENST00000540747 SP3Q02447 781 aa9.31□□□□□ -0.92
YBX3-209ENST00000540747 LMBR1LQ6UX01 489 aa9.31□□□□□ -0.92
YBX3-209ENST00000540747 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.31□□□□□ -0.92
YBX3-209ENST00000540747 CNKSR2Q8WXI2 1034 aa9.31□□□□□ -0.92
YBX3-209ENST00000540747 EFCC1Q9HA90 598 aa9.31□□□□□ -0.92
YBX3-209ENST00000540747 VEZTQ9HBM0 779 aa9.31□□□□□ -0.92
YBX3-209ENST00000540747 JAG2Q9Y219 1238 aa9.31□□□□□ -0.92
YBX3-209ENST00000540747 F6X3S4 739 aa9.3□□□□□ -0.92
YBX3-209ENST00000540747 EN2P19622 333 aaPredicted RBP9.3□□□□□ -0.92
YBX3-209ENST00000540747 FXR1P51114 621 aaKnown RBP eCLIP9.3□□□□□ -0.92
YBX3-209ENST00000540747 TNFAIP1Q13829 316 aa9.3□□□□□ -0.92
YBX3-209ENST00000540747 VGLL4Q14135 290 aa9.3□□□□□ -0.92
YBX3-209ENST00000540747 UBE4AQ14139 1066 aa9.3□□□□□ -0.92
YBX3-209ENST00000540747 GRIK5Q16478 980 aa9.3□□□□□ -0.92
YBX3-209ENST00000540747 OTUD7BQ6GQQ9 843 aa9.3□□□□□ -0.92
YBX3-209ENST00000540747 DZIP1LQ8IYY4 767 aaKnown RBP9.3□□□□□ -0.92
YBX3-209ENST00000540747 OPTNQ96CV9 577 aa9.3□□□□□ -0.92
YBX3-209ENST00000540747 KAZALD1Q96I82 304 aa9.3□□□□□ -0.92
YBX3-209ENST00000540747 ZNF594Q96JF6 807 aaPredicted RBP9.3□□□□□ -0.92
YBX3-209ENST00000540747 FAM84BQ96KN1 310 aaPredicted RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms