RNA–Protein interactions for RNA: ENST00000538333.3

LIMK1-208, Transcript of LIM domain kinase 1, humanhuman

TSL 2 BASIC

Gene LIMK1, Length 2,170 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-208ENST00000538333 PDIA3P30101 505 aaKnown RBP16.54■□□□□ 0.24
LIMK1-208ENST00000538333 TPRNQ4KMQ1 711 aa16.54■□□□□ 0.24
LIMK1-208ENST00000538333 PARP10Q53GL7 1025 aa16.54■□□□□ 0.24
LIMK1-208ENST00000538333 HS1BP3Q53T59 392 aa16.54■□□□□ 0.24
LIMK1-208ENST00000538333 CHST3Q7LGC8 479 aa16.54■□□□□ 0.24
LIMK1-208ENST00000538333 A0A0G2JS52 829 aa16.53■□□□□ 0.24
LIMK1-208ENST00000538333 HAND2P61296 217 aa16.53■□□□□ 0.24
LIMK1-208ENST00000538333 HMGN5P82970 282 aaKnown RBP16.53■□□□□ 0.24
LIMK1-208ENST00000538333 UBE3CQ15386 1083 aa16.53■□□□□ 0.24
LIMK1-208ENST00000538333 ZSCAN25Q6NSZ9 544 aa16.53■□□□□ 0.24
LIMK1-208ENST00000538333 MB21D2Q8IYB1 491 aaPredicted RBP16.53■□□□□ 0.24
LIMK1-208ENST00000538333 FAM184AQ8NB25 1140 aa16.53■□□□□ 0.24
LIMK1-208ENST00000538333 PTPDC1A2A3K4 754 aa16.53■□□□□ 0.24
LIMK1-208ENST00000538333 NUTM2BA6NNL0 878 aaPredicted RBP16.53■□□□□ 0.24
LIMK1-208ENST00000538333 NUTM2EB1AL46 878 aaPredicted RBP16.53■□□□□ 0.24
LIMK1-208ENST00000538333 NTSR2O95665 410 aa16.53■□□□□ 0.24
LIMK1-208ENST00000538333 UQCRFS1P1P0C7P4 283 aa16.53■□□□□ 0.24
LIMK1-208ENST00000538333 SLC9C2Q5TAH2 1124 aa16.53■□□□□ 0.24
LIMK1-208ENST00000538333 NUTM2AQ8IVF1 878 aaPredicted RBP16.53■□□□□ 0.24
LIMK1-208ENST00000538333 HELBQ8NG08 1087 aaPredicted RBP16.53■□□□□ 0.24
LIMK1-208ENST00000538333 RTL9Q8NET4 1388 aa16.52■□□□□ 0.24
LIMK1-208ENST00000538333 CCT2P78371 535 aaKnown RBP16.52■□□□□ 0.24
LIMK1-208ENST00000538333 LEO1Q8WVC0 666 aaPredicted RBP16.52■□□□□ 0.24
LIMK1-208ENST00000538333 ZSCAN16Q9H4T2 348 aaPredicted RBP16.52■□□□□ 0.24
LIMK1-208ENST00000538333 NCOA5Q9HCD5 579 aaKnown RBP16.52■□□□□ 0.24
LIMK1-208ENST00000538333 SEC31BQ9NQW1 1179 aa16.52■□□□□ 0.24
LIMK1-208ENST00000538333 TFIP11Q9UBB9 837 aaKnown RBP16.52■□□□□ 0.24
LIMK1-208ENST00000538333 TCRBV5S4A2TA0A5A2 114 aa16.51■□□□□ 0.23
LIMK1-208ENST00000538333 NAA16Q6N069 864 aaPredicted RBP16.51■□□□□ 0.23
LIMK1-208ENST00000538333 H3BQV1 296 aa16.51■□□□□ 0.23
LIMK1-208ENST00000538333 KCNQ2O43526 872 aa16.51■□□□□ 0.23
LIMK1-208ENST00000538333 ANTXR2P58335 489 aa16.51■□□□□ 0.23
LIMK1-208ENST00000538333 IFFO2Q5TF58 517 aa16.51■□□□□ 0.23
LIMK1-208ENST00000538333 ZSCAN30Q86W11 494 aa16.51■□□□□ 0.23
LIMK1-208ENST00000538333 SPATA32Q96LK8 384 aa16.51■□□□□ 0.23
LIMK1-208ENST00000538333 NBPF3Q9H094 633 aa16.51■□□□□ 0.23
LIMK1-208ENST00000538333 GPHNQ9NQX3 736 aaPredicted RBP16.51■□□□□ 0.23
LIMK1-208ENST00000538333 FAM177BA6PVY3 158 aa16.5■□□□□ 0.23
LIMK1-208ENST00000538333 IDH1O75874 414 aaKnown RBP16.5■□□□□ 0.23
LIMK1-208ENST00000538333 PDE6AP16499 860 aa16.5■□□□□ 0.23
LIMK1-208ENST00000538333 UVSSAQ2YD98 709 aa16.5■□□□□ 0.23
LIMK1-208ENST00000538333 GIMAP6Q6P9H5 292 aa16.5■□□□□ 0.23
LIMK1-208ENST00000538333 SMARCC1Q92922 1105 aaPredicted RBP16.5■□□□□ 0.23
LIMK1-208ENST00000538333 WWC3Q9ULE0 1092 aa16.5■□□□□ 0.23
LIMK1-208ENST00000538333 NIP7Q9Y221 180 aaKnown RBP eCLIP16.5■□□□□ 0.23
LIMK1-208ENST00000538333 WDR19Q8NEZ3 1342 aa16.5■□□□□ 0.23
LIMK1-208ENST00000538333 ZNF532Q9HCE3 1301 aa16.5■□□□□ 0.23
LIMK1-208ENST00000538333 COL4A1P02462 1669 aa16.5■□□□□ 0.23
LIMK1-208ENST00000538333 ZNF213O14771 459 aa16.5■□□□□ 0.23
LIMK1-208ENST00000538333 SLC5A1P13866 664 aa16.5■□□□□ 0.23
LIMK1-208ENST00000538333 LIG1P18858 919 aa16.5■□□□□ 0.23
LIMK1-208ENST00000538333 MCM5P33992 734 aa16.5■□□□□ 0.23
LIMK1-208ENST00000538333 CCDC152Q4G0S7 254 aa16.5■□□□□ 0.23
LIMK1-208ENST00000538333 NCOA7Q8NI08 942 aa16.5■□□□□ 0.23
LIMK1-208ENST00000538333 CASZ1Q86V15 1759 aa16.49■□□□□ 0.23
LIMK1-208ENST00000538333 SNAP23O00161 211 aa16.49■□□□□ 0.23
LIMK1-208ENST00000538333 PRC1O43663 620 aa16.49■□□□□ 0.23
LIMK1-208ENST00000538333 ADD1P35611 737 aaKnown RBP16.49■□□□□ 0.23
LIMK1-208ENST00000538333 MPHOSPH8Q99549 860 aa16.49■□□□□ 0.23
LIMK1-208ENST00000538333 KIF3AQ9Y496 699 aa16.49■□□□□ 0.23
LIMK1-208ENST00000538333 FDPSP14324 419 aaKnown RBP16.48■□□□□ 0.23
LIMK1-208ENST00000538333 RASGRF1Q13972 1273 aa16.48■□□□□ 0.23
LIMK1-208ENST00000538333 SPATA5Q8NB90 893 aa16.48■□□□□ 0.23
LIMK1-208ENST00000538333 CHMP4CQ96CF2 233 aa16.48■□□□□ 0.23
LIMK1-208ENST00000538333 CARMIL3Q8ND23 1372 aa16.48■□□□□ 0.23
LIMK1-208ENST00000538333 A0A1B0GUL6 1792 aa16.48■□□□□ 0.23
LIMK1-208ENST00000538333 BCL9LQ86UU0 1499 aa16.48■□□□□ 0.23
LIMK1-208ENST00000538333 PGBD1Q96JS3 809 aa16.48■□□□□ 0.23
LIMK1-208ENST00000538333 C4AP0C0L4 1744 aa16.47■□□□□ 0.23
LIMK1-208ENST00000538333 C4BP0C0L5 1744 aa16.47■□□□□ 0.23
LIMK1-208ENST00000538333 HPS5Q9UPZ3 1129 aa16.47■□□□□ 0.23
LIMK1-208ENST00000538333 RALYLQ86SE5 291 aaKnown RBP16.47■□□□□ 0.23
LIMK1-208ENST00000538333 TBC1D10CQ8IV04 446 aa16.47■□□□□ 0.23
LIMK1-208ENST00000538333 STRBPQ96SI9 672 aaKnown RBP16.47■□□□□ 0.23
LIMK1-208ENST00000538333 NAP1L2Q9ULW6 460 aaPredicted RBP16.47■□□□□ 0.23
LIMK1-208ENST00000538333 NOL7Q9UMY1 257 aaKnown RBP16.47■□□□□ 0.23
LIMK1-208ENST00000538333 CHD4Q14839 1912 aa16.47■□□□□ 0.23
LIMK1-208ENST00000538333 CLEC4GQ6UXB4 293 aa16.46■□□□□ 0.23
LIMK1-208ENST00000538333 NUP62CLQ9H1M0 184 aa16.46■□□□□ 0.23
LIMK1-208ENST00000538333 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.46■□□□□ 0.23
LIMK1-208ENST00000538333 CFAP45Q9UL16 551 aa16.46■□□□□ 0.23
LIMK1-208ENST00000538333 DENND2AQ9ULE3 1009 aa16.46■□□□□ 0.23
LIMK1-208ENST00000538333 ZMYM6O95789 1325 aa16.46■□□□□ 0.23
LIMK1-208ENST00000538333 KLF18A0A0U1RQI7 1052 aa16.45■□□□□ 0.22
LIMK1-208ENST00000538333 HSPA1LP34931 641 aa16.45■□□□□ 0.22
LIMK1-208ENST00000538333 IGHMBP2P38935 993 aaKnown RBP16.45■□□□□ 0.22
LIMK1-208ENST00000538333 ALX1Q15699 326 aa16.45■□□□□ 0.22
LIMK1-208ENST00000538333 LINC00116Q8NCU8 138 aa16.45■□□□□ 0.22
LIMK1-208ENST00000538333 NKX2-3Q8TAU0 364 aa16.45■□□□□ 0.22
LIMK1-208ENST00000538333 DACT1Q9NYF0 836 aa16.45■□□□□ 0.22
LIMK1-208ENST00000538333 ZNF652Q9Y2D9 606 aa16.45■□□□□ 0.22
LIMK1-208ENST00000538333 SCN7AQ01118 1682 aa16.45■□□□□ 0.22
LIMK1-208ENST00000538333 FAM98CQ17RN3 349 aaKnown RBP16.45■□□□□ 0.22
LIMK1-208ENST00000538333 RBM43Q6ZSC3 357 aaKnown RBP16.45■□□□□ 0.22
LIMK1-208ENST00000538333 GOLGA6L4A6NEF3 574 aa16.44■□□□□ 0.22
LIMK1-208ENST00000538333 PPFIA3O75145 1194 aa16.44■□□□□ 0.22
LIMK1-208ENST00000538333 TAF1P21675 1872 aa16.44■□□□□ 0.22
LIMK1-208ENST00000538333 FOSBP53539 338 aa16.44■□□□□ 0.22
LIMK1-208ENST00000538333 ILDR1Q86SU0 546 aaPredicted RBP16.44■□□□□ 0.22
LIMK1-208ENST00000538333 DDX19AQ9NUU7 478 aaKnown RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms