RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 MCM6Q14566 821 aa12.52□□□□□ -0.4
CLSTN3-207ENST00000537408 NBPF3Q9H094 633 aa12.52□□□□□ -0.4
CLSTN3-207ENST00000537408 NAT10Q9H0A0 1025 aaKnown RBP12.52□□□□□ -0.4
CLSTN3-207ENST00000537408 CLSTN2Q9H4D0 955 aa12.52□□□□□ -0.4
CLSTN3-207ENST00000537408 EIF4A2Q14240 407 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-207ENST00000537408 USP16Q9Y5T5 823 aa12.52□□□□□ -0.41
CLSTN3-207ENST00000537408 CCDC151A5D8V7 595 aa12.52□□□□□ -0.41
CLSTN3-207ENST00000537408 LIG3P49916 1009 aa12.52□□□□□ -0.41
CLSTN3-207ENST00000537408 ARID5BQ14865 1188 aa12.52□□□□□ -0.41
CLSTN3-207ENST00000537408 RABGGTAQ92696 567 aa12.52□□□□□ -0.41
CLSTN3-207ENST00000537408 FMNL2Q96PY5 1086 aa12.52□□□□□ -0.41
CLSTN3-207ENST00000537408 EYA1Q99502 592 aa12.52□□□□□ -0.41
CLSTN3-207ENST00000537408 THUMPD2Q9BTF0 503 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-207ENST00000537408 A0A1B0GUA9 196 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 KLHL33A6NCF5 533 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 TMCO5BA8MYB1 307 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 EBAG9O00559 213 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 C21orf2O43822 256 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 APOBRQ0VD83 1088 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 TWISTNBQ3B726 338 aaPredicted RBP12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 SCAND2PQ9GZW5 306 aaPredicted RBP12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 PDE11AQ9HCR9 933 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 ANKRD65E5RJM6 399 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 STX1AQ16623 288 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 TEX11Q8IYF3 940 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 FAM71BQ8TC56 605 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 JPH2Q9BR39 696 aaPredicted RBP12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 SPON1Q9HCB6 807 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 ZSCAN12O43309 604 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 AKAP4Q5JQC9 854 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 LRRN4CLQ8ND94 238 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 MIEF2Q96C03 454 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 FUT8Q9BYC5 575 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 KIF24Q5T7B8 1368 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 KCNJ6P48051 423 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 ESYT1Q9BSJ8 1104 aa12.51□□□□□ -0.41
CLSTN3-207ENST00000537408 PHLPP1O60346 1717 aa12.5□□□□□ -0.41
CLSTN3-207ENST00000537408 FAM210AQ96ND0 272 aa12.5□□□□□ -0.41
CLSTN3-207ENST00000537408 KIAA0754O94854 1291 aa12.5□□□□□ -0.41
CLSTN3-207ENST00000537408 ARID4AP29374 1257 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-207ENST00000537408 INPP5BP32019 993 aa12.5□□□□□ -0.41
CLSTN3-207ENST00000537408 PPP2R3AQ06190 1150 aa12.5□□□□□ -0.41
CLSTN3-207ENST00000537408 FOXR1Q6PIV2 292 aa12.5□□□□□ -0.41
CLSTN3-207ENST00000537408 C16orf71Q8IYS4 520 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-207ENST00000537408 CNNM3Q8NE01 707 aa12.5□□□□□ -0.41
CLSTN3-207ENST00000537408 N4BP2L2Q92802 583 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-207ENST00000537408 CABS1Q96KC9 395 aa12.5□□□□□ -0.41
CLSTN3-207ENST00000537408 TRIM6Q9C030 488 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-207ENST00000537408 LIMCH1Q9UPQ0 1083 aa12.5□□□□□ -0.41
CLSTN3-207ENST00000537408 GCFC2P16383 781 aaKnown RBP12.5□□□□□ -0.41
CLSTN3-207ENST00000537408 CWC27Q6UX04 472 aaKnown RBP12.5□□□□□ -0.41
CLSTN3-207ENST00000537408 SPATA32Q96LK8 384 aa12.5□□□□□ -0.41
CLSTN3-207ENST00000537408 FAN1Q9Y2M0 1017 aa12.5□□□□□ -0.41
CLSTN3-207ENST00000537408 PARP3Q9Y6F1 533 aa12.5□□□□□ -0.41
CLSTN3-207ENST00000537408 SHTN1A0MZ66 631 aa12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 GPR162Q16538 588 aa12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 TRAPPC3LQ5T215 181 aa12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 MPHOSPH8Q99549 860 aa12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 SLC24A3Q9HC58 644 aa12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 A1CFQ9NQ94 594 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 OVOS2A0A0G2JMS6 1433 aa12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 OVOS2A0A0J9YW53 1432 aa12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 OVOS2Q6IE36 1432 aa12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 H3BQF6 201 aa12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 DCTN1Q14203 1278 aa12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 LRRC31Q6UY01 552 aa12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 CEP57L1Q8IYX8 460 aa12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 PARD6BQ9BYG5 372 aa12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 SPATS2LQ9NUQ6 558 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.49□□□□□ -0.413e-7■■□□□ 13.3
CLSTN3-207ENST00000537408 CPSF2Q9P2I0 782 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 CTAGE5O15320 804 aa12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 C11orf91Q3C1V1 193 aa12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 ANKRD18AQ8IVF6 992 aa12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 UTP14AQ9BVJ6 771 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 NUCKS1Q9H1E3 243 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 SSH2Q76I76 1423 aa12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 PPLO60437 1756 aa12.49□□□□□ -0.41
CLSTN3-207ENST00000537408 GOLGA6L9A6NEM1 432 aa12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 RPAP2Q8IXW5 612 aaPredicted RBP12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 CTCFLQ8NI51 663 aaPredicted RBP12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 GNPATO15228 680 aa12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 IPO7O95373 1038 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 PDCP20941 246 aa12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 NAIF1Q69YI7 327 aaPredicted RBP12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 SIRT2Q8IXJ6 389 aa12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 CEP112Q8N8E3 955 aa12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 AFAP1L1Q8TED9 768 aa12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 ITFG2Q969R8 447 aa12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 TXLNAP40222 546 aa12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 BICDL1Q6ZP65 573 aa12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 MCM10Q7L590 875 aa12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 ANO10Q9NW15 660 aa12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 STRCQ7RTU9 1775 aa12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 GJB2P29033 226 aa12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 TUBB4BP68371 445 aa12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 SKIDA1Q1XH10 827 aa12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 DEFB132Q7Z7B7 95 aa12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 SH3GL3Q99963 347 aa12.48□□□□□ -0.41
CLSTN3-207ENST00000537408 ROBO1Q9Y6N7 1651 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms