RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 CCZ1BP86790 482 aa13.49□□□□□ -0.25
SYNE1-234ENST00000536990 CCZ1P86791 482 aaPredicted RBP13.49□□□□□ -0.25
SYNE1-234ENST00000536990 CEP135Q66GS9 1140 aa13.49□□□□□ -0.25
SYNE1-234ENST00000536990 CTNNA3Q9UI47 895 aa13.49□□□□□ -0.25
SYNE1-234ENST00000536990 BECN2A8MW95 431 aa13.48□□□□□ -0.25
SYNE1-234ENST00000536990 FDPSP14324 419 aaKnown RBP13.48□□□□□ -0.25
SYNE1-234ENST00000536990 CCDC57Q2TAC2 916 aa13.48□□□□□ -0.25
SYNE1-234ENST00000536990 FMR1NBQ8N0W7 255 aaPredicted RBP13.48□□□□□ -0.25
SYNE1-234ENST00000536990 MAST3O60307 1309 aa13.48□□□□□ -0.25
SYNE1-234ENST00000536990 CARMIL3Q8ND23 1372 aa13.48□□□□□ -0.25
SYNE1-234ENST00000536990 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.48□□□□□ -0.25
SYNE1-234ENST00000536990 SKILP12757 684 aa13.48□□□□□ -0.25
SYNE1-234ENST00000536990 ME1P48163 572 aa13.48□□□□□ -0.25
SYNE1-234ENST00000536990 GUCY1B3Q02153 619 aa13.48□□□□□ -0.25
SYNE1-234ENST00000536990 CARD10Q9BWT7 1032 aa13.48□□□□□ -0.25
SYNE1-234ENST00000536990 PCDHA7Q9UN72 937 aa13.48□□□□□ -0.25
SYNE1-234ENST00000536990 ZNF330Q9Y3S2 320 aaPredicted RBP13.48□□□□□ -0.25
SYNE1-234ENST00000536990 CCDC69A6NI79 296 aa13.48□□□□□ -0.25
SYNE1-234ENST00000536990 PPFIA3O75145 1194 aa13.48□□□□□ -0.25
SYNE1-234ENST00000536990 GORABQ5T7V8 394 aa13.48□□□□□ -0.25
SYNE1-234ENST00000536990 FBXL16Q8N461 479 aa13.48□□□□□ -0.25
SYNE1-234ENST00000536990 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.48□□□□□ -0.25
SYNE1-234ENST00000536990 ISCA1Q9BUE6 129 aa13.48□□□□□ -0.25
SYNE1-234ENST00000536990 KCND1Q9NSA2 647 aa13.48□□□□□ -0.25
SYNE1-234ENST00000536990 EVCP57679 992 aa13.47□□□□□ -0.25
SYNE1-234ENST00000536990 FKBP4Q02790 459 aaKnown RBP eCLIP13.47□□□□□ -0.25
SYNE1-234ENST00000536990 TCIRG1Q13488 830 aa13.47□□□□□ -0.25
SYNE1-234ENST00000536990 CCDC158Q5M9N0 1113 aa13.47□□□□□ -0.25
SYNE1-234ENST00000536990 CEP57L1Q8IYX8 460 aa13.47□□□□□ -0.25
SYNE1-234ENST00000536990 ERCC4Q92889 916 aaPredicted RBP13.47□□□□□ -0.25
SYNE1-234ENST00000536990 RTEL1Q9NZ71 1219 aa13.47□□□□□ -0.25
SYNE1-234ENST00000536990 NAP1L2Q9ULW6 460 aaPredicted RBP13.47□□□□□ -0.25
SYNE1-234ENST00000536990 COL5A2P05997 1499 aaPredicted RBP13.47□□□□□ -0.25
SYNE1-234ENST00000536990 LRRFIP1Q32MZ4 808 aaKnown RBP13.47□□□□□ -0.25
SYNE1-234ENST00000536990 CHST3Q7LGC8 479 aa13.47□□□□□ -0.25
SYNE1-234ENST00000536990 AOPEPQ8N6M6 819 aa13.47□□□□□ -0.25
SYNE1-234ENST00000536990 MRPS27Q92552 414 aaKnown RBP13.47□□□□□ -0.25
SYNE1-234ENST00000536990 STRN4Q9NRL3 753 aa13.47□□□□□ -0.25
SYNE1-234ENST00000536990 ZHX1Q9UKY1 873 aaPredicted RBP13.47□□□□□ -0.25
SYNE1-234ENST00000536990 SPEF2Q9C093 1822 aa13.46□□□□□ -0.25
SYNE1-234ENST00000536990 TTC39AQ5SRH9 613 aa13.46□□□□□ -0.25
SYNE1-234ENST00000536990 ADALQ6DHV7 355 aa13.46□□□□□ -0.25
SYNE1-234ENST00000536990 NBPF11Q86T75 865 aa13.46□□□□□ -0.25
SYNE1-234ENST00000536990 OGFRQ9NZT2 677 aa13.46□□□□□ -0.25
SYNE1-234ENST00000536990 AKAP2Q9Y2D5 859 aa13.46□□□□□ -0.25
SYNE1-234ENST00000536990 A0A1W2PQ27 194 aa13.46□□□□□ -0.26
SYNE1-234ENST00000536990 A0A1W2PQ64 194 aa13.46□□□□□ -0.26
SYNE1-234ENST00000536990 A0A1W2PQD8 194 aa13.46□□□□□ -0.26
SYNE1-234ENST00000536990 FILIP1Q7Z7B0 1213 aa13.46□□□□□ -0.26
SYNE1-234ENST00000536990 CGNQ9P2M7 1197 aaKnown RBP13.46□□□□□ -0.26
SYNE1-234ENST00000536990 NEDD4P46934 1319 aa13.46□□□□□ -0.26
SYNE1-234ENST00000536990 PAPPAQ13219 1627 aa13.46□□□□□ -0.26
SYNE1-234ENST00000536990 M0R2C6 588 aa13.45□□□□□ -0.26
SYNE1-234ENST00000536990 EVA1CP58658 441 aa13.45□□□□□ -0.26
SYNE1-234ENST00000536990 PTPN14Q15678 1187 aa13.45□□□□□ -0.26
SYNE1-234ENST00000536990 TTLL5Q6EMB2 1281 aa13.45□□□□□ -0.26
SYNE1-234ENST00000536990 CCAR2Q8N163 923 aaKnown RBP13.45□□□□□ -0.26
SYNE1-234ENST00000536990 ZNF592Q92610 1267 aa13.45□□□□□ -0.26
SYNE1-234ENST00000536990 TMOD3Q9NYL9 352 aa13.45□□□□□ -0.26
SYNE1-234ENST00000536990 FBXO3Q9UK99 471 aa13.45□□□□□ -0.26
SYNE1-234ENST00000536990 NWD2Q9ULI1 1742 aa13.45□□□□□ -0.26
SYNE1-234ENST00000536990 TNS2Q63HR2 1409 aa13.45□□□□□ -0.26
SYNE1-234ENST00000536990 HSPA2P54652 639 aa13.45□□□□□ -0.26
SYNE1-234ENST00000536990 TAF7LQ5H9L4 462 aa13.45□□□□□ -0.26
SYNE1-234ENST00000536990 LINC00301Q8NCQ3 95 aa13.45□□□□□ -0.26
SYNE1-234ENST00000536990 OSBP2Q969R2 916 aa13.45□□□□□ -0.26
SYNE1-234ENST00000536990 XAGE2Q96GT9 111 aa13.45□□□□□ -0.26
SYNE1-234ENST00000536990 OSBPL5Q9H0X9 879 aaPredicted RBP13.45□□□□□ -0.26
SYNE1-234ENST00000536990 GPHNQ9NQX3 736 aaPredicted RBP13.45□□□□□ -0.26
SYNE1-234ENST00000536990 A0A1B0GVL5 298 aa13.45□□□□□ -0.26
SYNE1-234ENST00000536990 NDUFA8P51970 172 aa13.45□□□□□ -0.26
SYNE1-234ENST00000536990 CHMP4CQ96CF2 233 aa13.45□□□□□ -0.26
SYNE1-234ENST00000536990 NAT10Q9H0A0 1025 aaKnown RBP13.45□□□□□ -0.26
SYNE1-234ENST00000536990 FOXP2O15409 715 aa13.44□□□□□ -0.26
SYNE1-234ENST00000536990 ADORA1P30542 326 aa13.44□□□□□ -0.26
SYNE1-234ENST00000536990 TRIM28Q13263 835 aaKnown RBP13.44□□□□□ -0.26
SYNE1-234ENST00000536990 WASHC4Q2M389 1173 aa13.44□□□□□ -0.26
SYNE1-234ENST00000536990 CCDC85AQ96PX6 553 aaPredicted RBP13.44□□□□□ -0.26
SYNE1-234ENST00000536990 DDX41Q9UJV9 622 aaKnown RBP13.44□□□□□ -0.26
SYNE1-234ENST00000536990 CLIC4Q9Y696 253 aa13.44□□□□□ -0.26
SYNE1-234ENST00000536990 SOS2Q07890 1332 aaPredicted RBP13.44□□□□□ -0.26
SYNE1-234ENST00000536990 PCCAP05165 728 aaPredicted RBP13.44□□□□□ -0.26
SYNE1-234ENST00000536990 ZFYP08048 801 aaPredicted RBP13.44□□□□□ -0.26
SYNE1-234ENST00000536990 GSDMDP57764 484 aa13.44□□□□□ -0.26
SYNE1-234ENST00000536990 OTUD7BQ6GQQ9 843 aa13.44□□□□□ -0.26
SYNE1-234ENST00000536990 KIF6Q6ZMV9 814 aa13.44□□□□□ -0.26
SYNE1-234ENST00000536990 FAM89AQ96GI7 184 aa13.44□□□□□ -0.26
SYNE1-234ENST00000536990 KIAA1468Q9P260 1216 aa13.44□□□□□ -0.26
SYNE1-234ENST00000536990 ZNF215Q9UL58 517 aaPredicted RBP13.44□□□□□ -0.26
SYNE1-234ENST00000536990 BPIFA3Q9BQP9 254 aa13.43□□□□□ -0.26
SYNE1-234ENST00000536990 SDF4Q9BRK5 362 aa13.43□□□□□ -0.26
SYNE1-234ENST00000536990 TEX13AQ9BXU3 409 aaPredicted RBP13.43□□□□□ -0.26
SYNE1-234ENST00000536990 TRMT1Q9NXH9 659 aaKnown RBP13.43□□□□□ -0.26
SYNE1-234ENST00000536990 XIRP1Q702N8 1843 aaKnown RBP13.43□□□□□ -0.26
SYNE1-234ENST00000536990 IFIT5Q13325 482 aaKnown RBP13.43□□□□□ -0.26
SYNE1-234ENST00000536990 DPCR1Q3MIW9 517 aa13.43□□□□□ -0.26
SYNE1-234ENST00000536990 FBXW7Q969H0 707 aa13.43□□□□□ -0.26
SYNE1-234ENST00000536990 IMPACTQ9P2X3 320 aa13.43□□□□□ -0.26
SYNE1-234ENST00000536990 DDX60Q8IY21 1712 aaKnown RBP13.43□□□□□ -0.26
SYNE1-234ENST00000536990 YEATS4O95619 227 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms