RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 DDX23Q9BUQ8 820 aaKnown RBP20.56■□□□□ 0.88
SFSWAP-203ENST00000535236 NSRP1Q9H0G5 558 aaKnown RBP20.56■□□□□ 0.88
SFSWAP-203ENST00000535236 KRT83P78385 493 aa20.56■□□□□ 0.88
SFSWAP-203ENST00000535236 CALCOCO1Q9P1Z2 691 aa20.56■□□□□ 0.88
SFSWAP-203ENST00000535236 F13A1P00488 732 aa20.56■□□□□ 0.88
SFSWAP-203ENST00000535236 MTHFSDQ2M296 383 aaKnown RBP20.56■□□□□ 0.88
SFSWAP-203ENST00000535236 NEK11Q8NG66 645 aa20.56■□□□□ 0.88
SFSWAP-203ENST00000535236 SH2D4AQ9H788 454 aa20.56■□□□□ 0.88
SFSWAP-203ENST00000535236 SKILP12757 684 aa20.55■□□□□ 0.88
SFSWAP-203ENST00000535236 SP4Q02446 784 aa20.55■□□□□ 0.88
SFSWAP-203ENST00000535236 CCDC63Q8NA47 563 aa20.55■□□□□ 0.88
SFSWAP-203ENST00000535236 DACT1Q9NYF0 836 aa20.55■□□□□ 0.88
SFSWAP-203ENST00000535236 PLCH2O75038 1416 aa20.55■□□□□ 0.88
SFSWAP-203ENST00000535236 TTC6Q86TZ1 520 aa20.55■□□□□ 0.88
SFSWAP-203ENST00000535236 FAM200AQ8TCP9 573 aa20.55■□□□□ 0.88
SFSWAP-203ENST00000535236 PRDM10Q9NQV6 1147 aa20.55■□□□□ 0.88
SFSWAP-203ENST00000535236 WDR70Q9NW82 654 aa20.55■□□□□ 0.88
SFSWAP-203ENST00000535236 TFCP2Q12800 502 aa20.54■□□□□ 0.88
SFSWAP-203ENST00000535236 APBB1IPQ7Z5R6 666 aaPredicted RBP20.54■□□□□ 0.88
SFSWAP-203ENST00000535236 NAP1L4Q99733 375 aaKnown RBP20.54■□□□□ 0.88
SFSWAP-203ENST00000535236 STMN4Q9H169 189 aaPredicted RBP20.54■□□□□ 0.88
SFSWAP-203ENST00000535236 BIN2Q9UBW5 565 aaPredicted RBP20.54■□□□□ 0.88
SFSWAP-203ENST00000535236 KIF5AQ12840 1032 aa20.54■□□□□ 0.88
SFSWAP-203ENST00000535236 CHST3Q7LGC8 479 aa20.54■□□□□ 0.88
SFSWAP-203ENST00000535236 DCAF5Q96JK2 942 aa20.54■□□□□ 0.88
SFSWAP-203ENST00000535236 PARP1P09874 1014 aaKnown RBP20.54■□□□□ 0.88
SFSWAP-203ENST00000535236 DTHD1Q6ZMT9 781 aa20.54■□□□□ 0.88
SFSWAP-203ENST00000535236 CCDC42Q96M95 316 aa20.54■□□□□ 0.88
SFSWAP-203ENST00000535236 DNAI1Q9UI46 699 aa20.54■□□□□ 0.88
SFSWAP-203ENST00000535236 APOBRQ0VD83 1088 aa20.53■□□□□ 0.88
SFSWAP-203ENST00000535236 TRAPPC3LQ5T215 181 aa20.53■□□□□ 0.88
SFSWAP-203ENST00000535236 CCDC117Q8IWD4 279 aaPredicted RBP20.53■□□□□ 0.88
SFSWAP-203ENST00000535236 DNAJC25Q9H1X3 360 aa20.53■□□□□ 0.88
SFSWAP-203ENST00000535236 RBM28Q9NW13 759 aaKnown RBP20.53■□□□□ 0.88
SFSWAP-203ENST00000535236 JAG2Q9Y219 1238 aa20.53■□□□□ 0.88
SFSWAP-203ENST00000535236 FLT4P35916 1363 aa20.53■□□□□ 0.88
SFSWAP-203ENST00000535236 CWF19L2Q2TBE0 894 aaKnown RBP20.53■□□□□ 0.88
SFSWAP-203ENST00000535236 KRT86O43790 486 aa20.53■□□□□ 0.88
SFSWAP-203ENST00000535236 SYT1P21579 422 aa20.53■□□□□ 0.88
SFSWAP-203ENST00000535236 DNM1Q05193 864 aaKnown RBP20.53■□□□□ 0.88
SFSWAP-203ENST00000535236 ATP2C2O75185 946 aa20.52■□□□□ 0.88
SFSWAP-203ENST00000535236 UBXN1Q04323 297 aa20.52■□□□□ 0.88
SFSWAP-203ENST00000535236 RIMS2Q9UQ26 1411 aa20.52■□□□□ 0.88
SFSWAP-203ENST00000535236 PCDH11XQ9BZA7 1347 aa20.52■□□□□ 0.88
SFSWAP-203ENST00000535236 PCDH11YQ9BZA8 1340 aa20.52■□□□□ 0.88
SFSWAP-203ENST00000535236 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.52■□□□□ 0.88
SFSWAP-203ENST00000535236 GNPATO15228 680 aa20.52■□□□□ 0.88
SFSWAP-203ENST00000535236 RPRD2Q5VT52 1461 aaKnown RBP20.52■□□□□ 0.88
SFSWAP-203ENST00000535236 SPATA24Q86W54 205 aa20.52■□□□□ 0.87
SFSWAP-203ENST00000535236 DENND2AQ9ULE3 1009 aa20.52■□□□□ 0.87
SFSWAP-203ENST00000535236 KIAA1524Q8TCG1 905 aa20.51■□□□□ 0.87
SFSWAP-203ENST00000535236 MAP3K5Q99683 1374 aa20.51■□□□□ 0.87
SFSWAP-203ENST00000535236 ATP6V0A2Q9Y487 856 aa20.51■□□□□ 0.87
SFSWAP-203ENST00000535236 GJA3Q9Y6H8 435 aa20.51■□□□□ 0.87
SFSWAP-203ENST00000535236 CTAGE9A4FU28 777 aa20.51■□□□□ 0.87
SFSWAP-203ENST00000535236 TXNDC16Q9P2K2 825 aa20.51■□□□□ 0.87
SFSWAP-203ENST00000535236 CCDC186Q7Z3E2 898 aa20.5■□□□□ 0.87
SFSWAP-203ENST00000535236 RAB3GAP1Q15042 981 aa20.5■□□□□ 0.87
SFSWAP-203ENST00000535236 CREB3L3Q68CJ9 461 aa20.5■□□□□ 0.87
SFSWAP-203ENST00000535236 LAMC3Q9Y6N6 1575 aa20.5■□□□□ 0.87
SFSWAP-203ENST00000535236 TERF1P54274 439 aa20.5■□□□□ 0.87
SFSWAP-203ENST00000535236 STX17P56962 302 aa20.5■□□□□ 0.87
SFSWAP-203ENST00000535236 RPL13P26373 211 aaKnown RBP20.5■□□□□ 0.87
SFSWAP-203ENST00000535236 TEX11Q8IYF3 940 aa20.5■□□□□ 0.87
SFSWAP-203ENST00000535236 C19orf44Q9H6X5 657 aa20.5■□□□□ 0.87
SFSWAP-203ENST00000535236 PRIMPOLQ96LW4 560 aa20.49■□□□□ 0.87
SFSWAP-203ENST00000535236 PLIN2Q99541 437 aa20.49■□□□□ 0.87
SFSWAP-203ENST00000535236 PTPDC1A2A3K4 754 aa20.49■□□□□ 0.87
SFSWAP-203ENST00000535236 OPA1O60313 960 aa20.49■□□□□ 0.87
SFSWAP-203ENST00000535236 DHX32Q7L7V1 743 aaKnown RBP20.49■□□□□ 0.87
SFSWAP-203ENST00000535236 BRAPQ7Z569 592 aa20.49■□□□□ 0.87
SFSWAP-203ENST00000535236 CNBD1Q8NA66 436 aa20.49■□□□□ 0.87
SFSWAP-203ENST00000535236 PKD2L1Q9P0L9 805 aa20.49■□□□□ 0.87
SFSWAP-203ENST00000535236 SAP30BPQ9UHR5 308 aaKnown RBP20.49■□□□□ 0.87
SFSWAP-203ENST00000535236 ASXL1Q8IXJ9 1541 aa20.49■□□□□ 0.87
SFSWAP-203ENST00000535236 PICK1Q9NRD5 415 aa20.49■□□□□ 0.87
SFSWAP-203ENST00000535236 HSPA4P34932 840 aa20.48■□□□□ 0.87
SFSWAP-203ENST00000535236 CCDC6Q16204 474 aa20.48■□□□□ 0.87
SFSWAP-203ENST00000535236 TRERF1Q96PN7 1200 aa20.48■□□□□ 0.87
SFSWAP-203ENST00000535236 ARFGAP3Q9NP61 516 aa20.48■□□□□ 0.87
SFSWAP-203ENST00000535236 TMOD4Q9NZQ9 345 aa20.48■□□□□ 0.87
SFSWAP-203ENST00000535236 IQUBQ8NA54 791 aa20.48■□□□□ 0.87
SFSWAP-203ENST00000535236 TTC14Q96N46 770 aa20.48■□□□□ 0.87
SFSWAP-203ENST00000535236 FAM169AQ9Y6X4 670 aa20.48■□□□□ 0.87
SFSWAP-203ENST00000535236 ATP2A2P16615 1042 aaKnown RBP20.48■□□□□ 0.87
SFSWAP-203ENST00000535236 MAPK8IP2Q13387 824 aaPredicted RBP20.48■□□□□ 0.87
SFSWAP-203ENST00000535236 MBD4O95243 580 aa20.48■□□□□ 0.87
SFSWAP-203ENST00000535236 RXRAP19793 462 aa20.48■□□□□ 0.87
SFSWAP-203ENST00000535236 CCDC14Q49A88 953 aa20.48■□□□□ 0.87
SFSWAP-203ENST00000535236 CCDC65Q8IXS2 484 aa20.48■□□□□ 0.87
SFSWAP-203ENST00000535236 ZRANB1Q9UGI0 708 aa20.48■□□□□ 0.87
SFSWAP-203ENST00000535236 PCDHB15Q9Y5E8 787 aa20.48■□□□□ 0.87
SFSWAP-203ENST00000535236 TEX14Q8IWB6 1497 aa20.47■□□□□ 0.87
SFSWAP-203ENST00000535236 UFL1O94874 794 aa20.47■□□□□ 0.87
SFSWAP-203ENST00000535236 DCAF17Q5H9S7 520 aaPredicted RBP20.47■□□□□ 0.87
SFSWAP-203ENST00000535236 FRMD4BQ9Y2L6 1034 aa20.47■□□□□ 0.87
SFSWAP-203ENST00000535236 ZNF830Q96NB3 372 aaPredicted RBP20.47■□□□□ 0.87
SFSWAP-203ENST00000535236 SMC6Q96SB8 1091 aa20.47■□□□□ 0.87
SFSWAP-203ENST00000535236 NOD1Q9Y239 953 aa20.47■□□□□ 0.87
SFSWAP-203ENST00000535236 SNX16P57768 344 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms