RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 ATAD2BQ9ULI0 1458 aa12.41□□□□□ -0.42
CSDE1-213ENST00000530784 CD68P34810 354 aaPredicted RBP12.41□□□□□ -0.42
CSDE1-213ENST00000530784 HGSNATQ68CP4 663 aa12.41□□□□□ -0.42
CSDE1-213ENST00000530784 ZSCAN29Q8IWY8 852 aaPredicted RBP12.41□□□□□ -0.42
CSDE1-213ENST00000530784 KLHL23Q8NBE8 558 aa12.41□□□□□ -0.42
CSDE1-213ENST00000530784 DCAF11Q8TEB1 546 aa12.41□□□□□ -0.42
CSDE1-213ENST00000530784 WFDC12Q8WWY7 111 aa12.41□□□□□ -0.42
CSDE1-213ENST00000530784 SEC31BQ9NQW1 1179 aa12.41□□□□□ -0.42
CSDE1-213ENST00000530784 GRIA4P48058 902 aa12.4□□□□□ -0.42
CSDE1-213ENST00000530784 IREB2P48200 963 aaKnown RBP12.4□□□□□ -0.42
CSDE1-213ENST00000530784 PIP4K2BP78356 416 aa12.4□□□□□ -0.42
CSDE1-213ENST00000530784 SPRED3Q2MJR0 410 aa12.4□□□□□ -0.42
CSDE1-213ENST00000530784 SLC7A3Q8WY07 619 aa12.4□□□□□ -0.42
CSDE1-213ENST00000530784 ASB16Q96NS5 453 aa12.4□□□□□ -0.42
CSDE1-213ENST00000530784 MRPL18Q9H0U6 180 aaKnown RBP12.4□□□□□ -0.42
CSDE1-213ENST00000530784 EHD4Q9H223 541 aa12.4□□□□□ -0.42
CSDE1-213ENST00000530784 SMARCA4P51532 1647 aa12.4□□□□□ -0.42
CSDE1-213ENST00000530784 SMARCA2P51531 1590 aa12.39□□□□□ -0.43
CSDE1-213ENST00000530784 HMGXB3Q12766 1538 aa12.39□□□□□ -0.43
CSDE1-213ENST00000530784 EPS8L3Q8TE67 593 aaKnown RBP12.39□□□□□ -0.43
CSDE1-213ENST00000530784 WNT8BQ93098 351 aa12.39□□□□□ -0.43
CSDE1-213ENST00000530784 TPSG1Q9NRR2 321 aa12.39□□□□□ -0.43
CSDE1-213ENST00000530784 ERCC6Q03468 1493 aa12.39□□□□□ -0.43
CSDE1-213ENST00000530784 A0A096LPE4 126 aa12.38□□□□□ -0.43
CSDE1-213ENST00000530784 A0A1W2PPZ6 126 aa12.38□□□□□ -0.43
CSDE1-213ENST00000530784 SOX1O00570 391 aaPredicted RBP12.38□□□□□ -0.43
CSDE1-213ENST00000530784 DDX3YO15523 660 aaKnown RBP12.38□□□□□ -0.43
CSDE1-213ENST00000530784 ALX3O95076 343 aa12.38□□□□□ -0.43
CSDE1-213ENST00000530784 FURINP09958 794 aa12.38□□□□□ -0.43
CSDE1-213ENST00000530784 NOS3P29474 1203 aa12.38□□□□□ -0.43
CSDE1-213ENST00000530784 IKBKEQ14164 716 aa12.38□□□□□ -0.43
CSDE1-213ENST00000530784 SND1Q7KZF4 910 aaKnown RBP eCLIP12.38□□□□□ -0.43
CSDE1-213ENST00000530784 F8W735 103 aaPredicted RBP12.37□□□□□ -0.43
CSDE1-213ENST00000530784 ADAM11O75078 769 aa12.37□□□□□ -0.43
CSDE1-213ENST00000530784 GADD45BO75293 160 aaPredicted RBP12.37□□□□□ -0.43
CSDE1-213ENST00000530784 WISP1O95388 367 aa12.37□□□□□ -0.43
CSDE1-213ENST00000530784 TMEM130Q8N3G9 435 aa12.37□□□□□ -0.43
CSDE1-213ENST00000530784 AKTIPQ9H8T0 292 aa12.37□□□□□ -0.43
CSDE1-213ENST00000530784 OSGEPQ9NPF4 335 aa12.37□□□□□ -0.43
CSDE1-213ENST00000530784 CUX2O14529 1486 aa12.37□□□□□ -0.43
CSDE1-213ENST00000530784 PNMA6FA0A0J9YX94 578 aa12.36□□□□□ -0.43
CSDE1-213ENST00000530784 SUZ12Q15022 739 aaKnown RBP12.36□□□□□ -0.43
CSDE1-213ENST00000530784 ENOX2Q16206 610 aaKnown RBP12.36□□□□□ -0.43
CSDE1-213ENST00000530784 FOXD4L4Q8WXT5 416 aaPredicted RBP12.36□□□□□ -0.43
CSDE1-213ENST00000530784 ESRRAP11474 423 aaPredicted RBP12.35□□□□□ -0.43
CSDE1-213ENST00000530784 C19orf57Q0VDD7 668 aa12.35□□□□□ -0.43
CSDE1-213ENST00000530784 PI16Q6UXB8 463 aa12.35□□□□□ -0.43
CSDE1-213ENST00000530784 AGGF1Q8N302 714 aaeCLIP12.35□□□□□ -0.43
CSDE1-213ENST00000530784 BAZ1AQ9NRL2 1556 aaPredicted RBP12.35□□□□□ -0.43
CSDE1-213ENST00000530784 MAPK8P45983 427 aa12.34□□□□□ -0.43
CSDE1-213ENST00000530784 ARL4DP49703 201 aa12.34□□□□□ -0.43
CSDE1-213ENST00000530784 NLRP12P59046 1061 aa12.34□□□□□ -0.43
CSDE1-213ENST00000530784 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.34□□□□□ -0.43
CSDE1-213ENST00000530784 FMR1Q06787 632 aaKnown RBP eCLIP12.33□□□□□ -0.44
CSDE1-213ENST00000530784 GRM2Q14416 872 aa12.33□□□□□ -0.44
CSDE1-213ENST00000530784 DUOXA2Q1HG44 320 aa12.33□□□□□ -0.44
CSDE1-213ENST00000530784 ACAD11Q709F0 780 aa12.33□□□□□ -0.44
CSDE1-213ENST00000530784 UBASH3BQ8TF42 649 aa12.33□□□□□ -0.44
CSDE1-213ENST00000530784 MEGF10Q96KG7 1140 aa12.33□□□□□ -0.44
CSDE1-213ENST00000530784 SSBP4Q9BWG4 385 aaPredicted RBP12.33□□□□□ -0.44
CSDE1-213ENST00000530784 CLEC4MQ9H2X3 399 aaPredicted RBP12.32□□□□□ -0.44
CSDE1-213ENST00000530784 ABCB6Q9NP58 842 aa12.32□□□□□ -0.44
CSDE1-213ENST00000530784 NLRP2Q9NX02 1062 aa12.32□□□□□ -0.44
CSDE1-213ENST00000530784 BAZ1BQ9UIG0 1483 aaKnown RBP12.32□□□□□ -0.44
CSDE1-213ENST00000530784 PCDH1Q08174 1060 aa12.31□□□□□ -0.44
CSDE1-213ENST00000530784 ZNF423Q2M1K9 1284 aa12.31□□□□□ -0.44
CSDE1-213ENST00000530784 KIAA1211Q6ZU35 1233 aa12.31□□□□□ -0.44
CSDE1-213ENST00000530784 GLIS3Q8NEA6 775 aa12.31□□□□□ -0.44
CSDE1-213ENST00000530784 SETDB2Q96T68 719 aa12.31□□□□□ -0.44
CSDE1-213ENST00000530784 ITPKAP23677 461 aa12.3□□□□□ -0.44
CSDE1-213ENST00000530784 RSPO4Q2I0M5 234 aaPredicted RBP12.3□□□□□ -0.44
CSDE1-213ENST00000530784 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.3□□□□□ -0.44
CSDE1-213ENST00000530784 PRPF40BQ6NWY9 871 aaKnown RBP12.3□□□□□ -0.44
CSDE1-213ENST00000530784 TP53INP1Q96A56 240 aa12.3□□□□□ -0.44
CSDE1-213ENST00000530784 SOX17Q9H6I2 414 aaPredicted RBP12.3□□□□□ -0.44
CSDE1-213ENST00000530784 WWC3Q9ULE0 1092 aa12.3□□□□□ -0.44
CSDE1-213ENST00000530784 TMEM238LA0A1B0GVL6 79 aa12.29□□□□□ -0.44
CSDE1-213ENST00000530784 NKAPLQ5M9Q1 402 aa12.29□□□□□ -0.44
CSDE1-213ENST00000530784 ZNF576Q9H609 170 aa12.29□□□□□ -0.44
CSDE1-213ENST00000530784 TRAK1Q9UPV9 953 aa12.29□□□□□ -0.44
CSDE1-213ENST00000530784 PEG3Q9GZU2 1588 aa12.28□□□□□ -0.44
CSDE1-213ENST00000530784 GSTM4Q03013 218 aa12.28□□□□□ -0.44
CSDE1-213ENST00000530784 DZIP1LQ8IYY4 767 aaKnown RBP12.28□□□□□ -0.44
CSDE1-213ENST00000530784 BCO2Q9BYV7 579 aa12.28□□□□□ -0.44
CSDE1-213ENST00000530784 NESP48681 1621 aa12.27□□□□□ -0.44
CSDE1-213ENST00000530784 K7ELQ4 463 aaPredicted RBP12.27□□□□□ -0.45
CSDE1-213ENST00000530784 ADAM23O75077 832 aa12.27□□□□□ -0.45
CSDE1-213ENST00000530784 P4HBP07237 508 aaKnown RBP12.27□□□□□ -0.45
CSDE1-213ENST00000530784 GLB1P16278 677 aa12.27□□□□□ -0.45
CSDE1-213ENST00000530784 Q6ZS46 218 aa12.27□□□□□ -0.45
CSDE1-213ENST00000530784 GZF1Q9H116 711 aaPredicted RBP12.27□□□□□ -0.45
CSDE1-213ENST00000530784 USP26Q9BXU7 913 aa12.26□□□□□ -0.45
CSDE1-213ENST00000530784 SEMA6BQ9H3T3 888 aa12.26□□□□□ -0.45
CSDE1-213ENST00000530784 PTPN12Q05209 780 aaKnown RBP12.25□□□□□ -0.45
CSDE1-213ENST00000530784 NXPE4Q6UWF7 544 aa12.25□□□□□ -0.45
CSDE1-213ENST00000530784 ANKRD33BA6NCL7 494 aa12.24□□□□□ -0.45
CSDE1-213ENST00000530784 B3GALT4O96024 378 aa12.24□□□□□ -0.45
CSDE1-213ENST00000530784 FCGRTP55899 365 aa12.24□□□□□ -0.45
CSDE1-213ENST00000530784 FBF1Q8TES7 1133 aa12.24□□□□□ -0.45
CSDE1-213ENST00000530784 UBL7Q96S82 380 aaPredicted RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms