RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 PFKFB2O60825 505 aa17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 FGAP02671 866 aa17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 GNAT2P19087 354 aa17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 NBPF5PQ86XG9 351 aaPredicted RBP17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 SYAP1Q96A49 352 aaPredicted RBP17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 ANKRD2Q9GZV1 360 aa17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 PUS7LQ9H0K6 701 aaKnown RBP17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 PIH1D3Q9NQM4 214 aaKnown RBP17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 TAF6LQ9Y6J9 622 aa17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 DOCK2Q92608 1830 aa17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 SEMA3EO15041 775 aa17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 IDH1O75874 414 aaKnown RBP17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 PDE6AP16499 860 aa17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 EVCP57679 992 aa17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 ZNF445P59923 1031 aa17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 STOX1Q6ZVD7 989 aa17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 NCOA7Q8NI08 942 aa17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 ARHGEF1Q92888 912 aaKnown RBP17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 MTMR6Q9Y217 621 aa17.47■□□□□ 0.39
ECHDC1-220ENST00000528402 ZNF532Q9HCE3 1301 aa17.46■□□□□ 0.39
ECHDC1-220ENST00000528402 TCRBV5S4A2TA0A5A2 114 aa17.46■□□□□ 0.39
ECHDC1-220ENST00000528402 RFC4P35249 363 aa17.46■□□□□ 0.39
ECHDC1-220ENST00000528402 HMGN5P82970 282 aaKnown RBP17.46■□□□□ 0.39
ECHDC1-220ENST00000528402 ST3GAL1Q11201 340 aa17.46■□□□□ 0.39
ECHDC1-220ENST00000528402 RASGRF1Q13972 1273 aa17.46■□□□□ 0.39
ECHDC1-220ENST00000528402 CAVIN4Q5BKX8 364 aa17.46■□□□□ 0.39
ECHDC1-220ENST00000528402 SLC27A3Q5K4L6 730 aa17.46■□□□□ 0.39
ECHDC1-220ENST00000528402 PI16Q6UXB8 463 aa17.46■□□□□ 0.39
ECHDC1-220ENST00000528402 FAM196AQ6ZSG2 479 aa17.46■□□□□ 0.39
ECHDC1-220ENST00000528402 NECAB1Q8N987 351 aa17.46■□□□□ 0.39
ECHDC1-220ENST00000528402 PATL2C9JE40 543 aaKnown RBP17.45■□□□□ 0.38
ECHDC1-220ENST00000528402 MCM5P33992 734 aa17.45■□□□□ 0.38
ECHDC1-220ENST00000528402 RPS8P62241 208 aaKnown RBP17.45■□□□□ 0.38
ECHDC1-220ENST00000528402 TRDNQ13061 729 aa17.45■□□□□ 0.38
ECHDC1-220ENST00000528402 SLFNL1Q499Z3 407 aa17.45■□□□□ 0.38
ECHDC1-220ENST00000528402 FOXD4L5Q5VV16 416 aaPredicted RBP17.45■□□□□ 0.38
ECHDC1-220ENST00000528402 PTF1AQ7RTS3 328 aa17.45■□□□□ 0.38
ECHDC1-220ENST00000528402 FOXD4L4Q8WXT5 416 aaPredicted RBP17.45■□□□□ 0.38
ECHDC1-220ENST00000528402 BRF1Q92994 677 aa17.45■□□□□ 0.38
ECHDC1-220ENST00000528402 AIDAQ96BJ3 306 aa17.45■□□□□ 0.38
ECHDC1-220ENST00000528402 ZNF804BA4D1E1 1349 aa17.44■□□□□ 0.38
ECHDC1-220ENST00000528402 C4BP0C0L5 1744 aa17.44■□□□□ 0.38
ECHDC1-220ENST00000528402 BICDL1Q6ZP65 573 aa17.44■□□□□ 0.38
ECHDC1-220ENST00000528402 RALYLQ86SE5 291 aaKnown RBP17.44■□□□□ 0.38
ECHDC1-220ENST00000528402 RGS22Q8NE09 1264 aa17.44■□□□□ 0.38
ECHDC1-220ENST00000528402 TCEANC2Q96MN5 208 aa17.44■□□□□ 0.38
ECHDC1-220ENST00000528402 STRBPQ96SI9 672 aaKnown RBP17.44■□□□□ 0.38
ECHDC1-220ENST00000528402 QTRT2Q9H974 415 aaKnown RBP17.44■□□□□ 0.38
ECHDC1-220ENST00000528402 MINPP1Q9UNW1 487 aa17.44■□□□□ 0.38
ECHDC1-220ENST00000528402 PDS5AQ29RF7 1337 aaKnown RBP17.43■□□□□ 0.38
ECHDC1-220ENST00000528402 DHX16O60231 1041 aaKnown RBP17.43■□□□□ 0.38
ECHDC1-220ENST00000528402 BCAMP50895 628 aa17.43■□□□□ 0.38
ECHDC1-220ENST00000528402 SMARCC2Q8TAQ2 1214 aa17.43■□□□□ 0.38
ECHDC1-220ENST00000528402 DENND2AQ9ULE3 1009 aa17.43■□□□□ 0.38
ECHDC1-220ENST00000528402 PNPLA7Q6ZV29 1317 aa17.43■□□□□ 0.38
ECHDC1-220ENST00000528402 CASZ1Q86V15 1759 aa17.42■□□□□ 0.38
ECHDC1-220ENST00000528402 TCHHQ07283 1943 aa17.42■□□□□ 0.38
ECHDC1-220ENST00000528402 FOXP2O15409 715 aa17.42■□□□□ 0.38
ECHDC1-220ENST00000528402 KCNQ4P56696 695 aa17.42■□□□□ 0.38
ECHDC1-220ENST00000528402 USP48Q86UV5 1035 aa17.42■□□□□ 0.38
ECHDC1-220ENST00000528402 NACAP1Q9BZK3 213 aa17.42■□□□□ 0.38
ECHDC1-220ENST00000528402 GRPEL1Q9HAV7 217 aa17.42■□□□□ 0.38
ECHDC1-220ENST00000528402 A0A1B0GUL6 1792 aa17.42■□□□□ 0.38
ECHDC1-220ENST00000528402 CARMIL3Q8ND23 1372 aa17.41■□□□□ 0.38
ECHDC1-220ENST00000528402 MYO5AQ9Y4I1 1855 aaKnown RBP17.41■□□□□ 0.38
ECHDC1-220ENST00000528402 PHF14O94880 888 aa17.41■□□□□ 0.38
ECHDC1-220ENST00000528402 LETM1O95202 739 aaPredicted RBP17.41■□□□□ 0.38
ECHDC1-220ENST00000528402 TTLL5Q6EMB2 1281 aa17.41■□□□□ 0.38
ECHDC1-220ENST00000528402 CAVIN1Q6NZI2 390 aaKnown RBP17.41■□□□□ 0.38
ECHDC1-220ENST00000528402 MAGEB6Q8N7X4 407 aa17.41■□□□□ 0.38
ECHDC1-220ENST00000528402 FAM184AQ8NB25 1140 aa17.41■□□□□ 0.38
ECHDC1-220ENST00000528402 GPT2Q8TD30 523 aa17.41■□□□□ 0.38
ECHDC1-220ENST00000528402 ZSCAN16Q9H4T2 348 aaPredicted RBP17.41■□□□□ 0.38
ECHDC1-220ENST00000528402 SRP68Q9UHB9 627 aaKnown RBP17.41■□□□□ 0.38
ECHDC1-220ENST00000528402 VPS37CA5D8V6 355 aaPredicted RBP17.4■□□□□ 0.38
ECHDC1-220ENST00000528402 APPP05067 770 aa17.4■□□□□ 0.38
ECHDC1-220ENST00000528402 UBE2HP62256 183 aa17.4■□□□□ 0.38
ECHDC1-220ENST00000528402 SCRN1Q12765 414 aa17.4■□□□□ 0.38
ECHDC1-220ENST00000528402 STK3Q13188 491 aa17.4■□□□□ 0.38
ECHDC1-220ENST00000528402 VPS37DQ86XT2 251 aa17.4■□□□□ 0.38
ECHDC1-220ENST00000528402 MB21D2Q8IYB1 491 aaPredicted RBP17.4■□□□□ 0.38
ECHDC1-220ENST00000528402 MTA3Q9BTC8 594 aa17.4■□□□□ 0.38
ECHDC1-220ENST00000528402 LRP2BPQ9P2M1 347 aa17.4■□□□□ 0.38
ECHDC1-220ENST00000528402 WWC3Q9ULE0 1092 aa17.4■□□□□ 0.38
ECHDC1-220ENST00000528402 XRCC6P12956 609 aaKnown RBP eCLIP17.39■□□□□ 0.38
ECHDC1-220ENST00000528402 PDIA3P30101 505 aaKnown RBP17.39■□□□□ 0.38
ECHDC1-220ENST00000528402 KRT85P78386 507 aa17.39■□□□□ 0.38
ECHDC1-220ENST00000528402 COL9A3Q14050 684 aaPredicted RBP17.39■□□□□ 0.38
ECHDC1-220ENST00000528402 ZSCAN23Q3MJ62 389 aa17.39■□□□□ 0.38
ECHDC1-220ENST00000528402 FBXO33Q7Z6M2 555 aa17.39■□□□□ 0.38
ECHDC1-220ENST00000528402 CNNM2Q9H8M5 875 aa17.39■□□□□ 0.38
ECHDC1-220ENST00000528402 PRC1O43663 620 aa17.38■□□□□ 0.37
ECHDC1-220ENST00000528402 ATL3Q6DD88 541 aa17.38■□□□□ 0.37
ECHDC1-220ENST00000528402 NAA16Q6N069 864 aaPredicted RBP17.38■□□□□ 0.37
ECHDC1-220ENST00000528402 C3orf67Q6ZVT6 689 aa17.38■□□□□ 0.37
ECHDC1-220ENST00000528402 KRT27Q7Z3Y8 459 aa17.38■□□□□ 0.37
ECHDC1-220ENST00000528402 IFNL3Q8IZI9 196 aa17.38■□□□□ 0.37
ECHDC1-220ENST00000528402 CELF1Q92879 486 aaKnown RBP17.38■□□□□ 0.37
ECHDC1-220ENST00000528402 TMEM87BQ96K49 555 aa17.38■□□□□ 0.37
ECHDC1-220ENST00000528402 SCAND2PQ9GZW5 306 aaPredicted RBP17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms