RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 TTLL6Q8N841 843 aa22.67■■□□□ 1.22
VPS28-207ENST00000526977 POLLQ9UGP5 575 aa22.67■■□□□ 1.22
VPS28-207ENST00000526977 DENND2AQ9ULE3 1009 aa22.67■■□□□ 1.22
VPS28-207ENST00000526977 CIZ1Q9ULV3 898 aaPredicted RBP22.67■■□□□ 1.22
VPS28-207ENST00000526977 CYP2E1P05181 493 aaPredicted RBP22.66■■□□□ 1.22
VPS28-207ENST00000526977 DPP8Q6V1X1 898 aaPredicted RBP22.66■■□□□ 1.22
VPS28-207ENST00000526977 A0A0G2JLW4 131 aa22.65■■□□□ 1.22
VPS28-207ENST00000526977 C6orf229H3BNL8 230 aa22.65■■□□□ 1.22
VPS28-207ENST00000526977 DPEP1P16444 411 aa22.65■■□□□ 1.22
VPS28-207ENST00000526977 PTGER2P43116 358 aa22.65■■□□□ 1.22
VPS28-207ENST00000526977 ZNF804AQ7Z570 1209 aa22.65■■□□□ 1.22
VPS28-207ENST00000526977 TXNRD3Q86VQ6 643 aa22.65■■□□□ 1.22
VPS28-207ENST00000526977 CD2APQ9Y5K6 639 aa22.65■■□□□ 1.22
VPS28-207ENST00000526977 KIF13BQ9NQT8 1826 aa22.65■■□□□ 1.22
VPS28-207ENST00000526977 ZFYP08048 801 aaPredicted RBP22.65■■□□□ 1.22
VPS28-207ENST00000526977 KCNA3P22001 575 aa22.65■■□□□ 1.22
VPS28-207ENST00000526977 GRIPAP1Q4V328 841 aa22.65■■□□□ 1.22
VPS28-207ENST00000526977 C7orf43Q8WVR3 580 aa22.65■■□□□ 1.22
VPS28-207ENST00000526977 FAM227BQ96M60 508 aa22.65■■□□□ 1.22
VPS28-207ENST00000526977 DEKP35659 375 aaKnown RBP22.64■■□□□ 1.22
VPS28-207ENST00000526977 NMIQ13287 307 aaPredicted RBP22.64■■□□□ 1.22
VPS28-207ENST00000526977 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.64■■□□□ 1.222e-7■■■■□ 23.7
VPS28-207ENST00000526977 AKAP11Q9UKA4 1901 aa22.64■■□□□ 1.21
VPS28-207ENST00000526977 MED23Q9ULK4 1368 aa22.64■■□□□ 1.21
VPS28-207ENST00000526977 PDS5AQ29RF7 1337 aaKnown RBP22.64■■□□□ 1.21
VPS28-207ENST00000526977 PTH1RQ03431 593 aa22.64■■□□□ 1.21
VPS28-207ENST00000526977 ZSCAN25Q6NSZ9 544 aa22.64■■□□□ 1.21
VPS28-207ENST00000526977 SPON1Q9HCB6 807 aa22.63■■□□□ 1.21
VPS28-207ENST00000526977 RNF113AO15541 343 aaKnown RBP22.62■■□□□ 1.21
VPS28-207ENST00000526977 PIM2Q9P1W9 311 aa22.62■■□□□ 1.21
VPS28-207ENST00000526977 IQSEC3Q9UPP2 1182 aaPredicted RBP22.62■■□□□ 1.21
VPS28-207ENST00000526977 OLFM4Q6UX06 510 aa22.62■■□□□ 1.21
VPS28-207ENST00000526977 EYA3Q99504 573 aa22.62■■□□□ 1.21
VPS28-207ENST00000526977 ZC3H12CQ9C0D7 883 aaKnown RBP22.62■■□□□ 1.21
VPS28-207ENST00000526977 SNX14Q9Y5W7 946 aa22.62■■□□□ 1.21
VPS28-207ENST00000526977 WASHC4Q2M389 1173 aa22.61■■□□□ 1.21
VPS28-207ENST00000526977 RASEFQ8IZ41 740 aa22.61■■□□□ 1.21
VPS28-207ENST00000526977 TDRD7Q8NHU6 1098 aaKnown RBP22.61■■□□□ 1.21
VPS28-207ENST00000526977 PIH1D3Q9NQM4 214 aaKnown RBP22.61■■□□□ 1.21
VPS28-207ENST00000526977 SLX4Q8IY92 1834 aa22.61■■□□□ 1.21
VPS28-207ENST00000526977 DLEC1Q9Y238 1755 aa22.61■■□□□ 1.21
VPS28-207ENST00000526977 LTBP1Q14766 1721 aa22.61■■□□□ 1.21
VPS28-207ENST00000526977 MCM2P49736 904 aa22.6■■□□□ 1.21
VPS28-207ENST00000526977 HELLSQ9NRZ9 838 aa22.6■■□□□ 1.21
VPS28-207ENST00000526977 MAP3K12Q12852 859 aa22.6■■□□□ 1.21
VPS28-207ENST00000526977 GPR101Q96P66 508 aaPredicted RBP22.6■■□□□ 1.21
VPS28-207ENST00000526977 RTFDC1Q9BY42 306 aaPredicted RBP22.6■■□□□ 1.21
VPS28-207ENST00000526977 CD209Q9NNX6 404 aa22.6■■□□□ 1.21
VPS28-207ENST00000526977 PPP1R1BQ9UD71 204 aaPredicted RBP22.6■■□□□ 1.21
VPS28-207ENST00000526977 A0A0D9SFI3 127 aa22.59■■□□□ 1.21
VPS28-207ENST00000526977 IDH1O75874 414 aaKnown RBP22.59■■□□□ 1.21
VPS28-207ENST00000526977 IL1R1P14778 569 aa22.59■■□□□ 1.21
VPS28-207ENST00000526977 MCMDC2Q4G0Z9 681 aa22.59■■□□□ 1.21
VPS28-207ENST00000526977 UPF3BQ9BZI7 483 aaKnown RBP22.59■■□□□ 1.21
VPS28-207ENST00000526977 RAB3GAP1Q15042 981 aa22.58■■□□□ 1.21
VPS28-207ENST00000526977 ZMYM1Q5SVZ6 1142 aa22.58■■□□□ 1.21
VPS28-207ENST00000526977 IL27Q8NEV9 243 aa22.58■■□□□ 1.21
VPS28-207ENST00000526977 COA1Q9GZY4 146 aa22.58■■□□□ 1.21
VPS28-207ENST00000526977 ZNF219Q9P2Y4 722 aaPredicted RBP22.58■■□□□ 1.21
VPS28-207ENST00000526977 CCDC171Q6TFL3 1326 aa22.58■■□□□ 1.21
VPS28-207ENST00000526977 C21orf2O43822 256 aa22.58■■□□□ 1.2
VPS28-207ENST00000526977 SLC9C2Q5TAH2 1124 aa22.58■■□□□ 1.2
VPS28-207ENST00000526977 SOGA3Q5TF21 947 aa22.58■■□□□ 1.2
VPS28-207ENST00000526977 RTKN2Q8IZC4 609 aa22.58■■□□□ 1.2
VPS28-207ENST00000526977 SUPT20HQ8NEM7 779 aa22.58■■□□□ 1.2
VPS28-207ENST00000526977 KCNB2Q92953 911 aa22.58■■□□□ 1.2
VPS28-207ENST00000526977 LRP2BPQ9P2M1 347 aa22.58■■□□□ 1.2
VPS28-207ENST00000526977 IGSF3O75054 1194 aa22.57■■□□□ 1.2
VPS28-207ENST00000526977 MCM4P33991 863 aa22.57■■□□□ 1.2
VPS28-207ENST00000526977 NECTIN1Q15223 517 aa22.57■■□□□ 1.2
VPS28-207ENST00000526977 UBE3CQ15386 1083 aa22.57■■□□□ 1.2
VPS28-207ENST00000526977 CCDC93Q567U6 631 aa22.57■■□□□ 1.2
VPS28-207ENST00000526977 MAP4K1Q92918 833 aa22.57■■□□□ 1.2
VPS28-207ENST00000526977 TMX3Q96JJ7 454 aa22.57■■□□□ 1.2
VPS28-207ENST00000526977 CACNA1SQ13698 1873 aa22.57■■□□□ 1.2
VPS28-207ENST00000526977 ADD2P35612 726 aa22.57■■□□□ 1.2
VPS28-207ENST00000526977 WDR66Q8TBY9 1149 aa22.57■■□□□ 1.2
VPS28-207ENST00000526977 RIMBP2O15034 1052 aa22.56■■□□□ 1.2
VPS28-207ENST00000526977 DALRD3Q5D0E6 543 aaKnown RBP22.56■■□□□ 1.2
VPS28-207ENST00000526977 ZGPATQ8N5A5 531 aaKnown RBP22.56■■□□□ 1.2
VPS28-207ENST00000526977 APPBP2Q92624 585 aa22.56■■□□□ 1.2
VPS28-207ENST00000526977 TNPO1Q92973 898 aaKnown RBP22.56■■□□□ 1.2
VPS28-207ENST00000526977 ABCF2Q9UG63 623 aa22.56■■□□□ 1.2
VPS28-207ENST00000526977 DUOX1Q9NRD9 1551 aa22.55■■□□□ 1.2
VPS28-207ENST00000526977 COL1A1P02452 1464 aaPredicted RBP22.55■■□□□ 1.2
VPS28-207ENST00000526977 KLHL34Q8N239 644 aa22.55■■□□□ 1.2
VPS28-207ENST00000526977 CWC22Q9HCG8 908 aaKnown RBP22.55■■□□□ 1.2
VPS28-207ENST00000526977 CHGBP05060 677 aa22.55■■□□□ 1.2
VPS28-207ENST00000526977 TMED8Q6PL24 325 aaPredicted RBP22.55■■□□□ 1.2
VPS28-207ENST00000526977 SALL1Q9NSC2 1324 aa22.54■■□□□ 1.2
VPS28-207ENST00000526977 PDE6AP16499 860 aa22.54■■□□□ 1.2
VPS28-207ENST00000526977 CHAF1AQ13111 956 aaPredicted RBP22.54■■□□□ 1.2
VPS28-207ENST00000526977 SPTY2D1Q68D10 685 aaPredicted RBP22.54■■□□□ 1.2
VPS28-207ENST00000526977 RBM8AQ9Y5S9 174 aaKnown RBP22.54■■□□□ 1.2
VPS28-207ENST00000526977 SNED1Q8TER0 1413 aa22.54■■□□□ 1.2
VPS28-207ENST00000526977 G3V3G9 751 aa22.53■■□□□ 1.2
VPS28-207ENST00000526977 DCAF8Q5TAQ9 597 aa22.53■■□□□ 1.2
VPS28-207ENST00000526977 ZNF589Q86UQ0 364 aaPredicted RBP22.53■■□□□ 1.2
VPS28-207ENST00000526977 SEC62Q99442 399 aaKnown RBP22.53■■□□□ 1.2
VPS28-207ENST00000526977 CUL4AQ13619 759 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms