RNA–Protein interactions for RNA: ENST00000521559.1

VPS13B-209, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 3

Gene VPS13B, Length 466 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-209ENST00000521559 DCAF1Q9Y4B6 1507 aa5.88□□□□□ -1.47
VPS13B-209ENST00000521559 NACADO15069 1562 aa5.88□□□□□ -1.47
VPS13B-209ENST00000521559 POLR3DP05423 398 aaPredicted RBP5.87□□□□□ -1.47
VPS13B-209ENST00000521559 ZMYM1Q5SVZ6 1142 aa5.87□□□□□ -1.47
VPS13B-209ENST00000521559 KIAA0319Q5VV43 1072 aa5.87□□□□□ -1.47
VPS13B-209ENST00000521559 PEAR1Q5VY43 1037 aaPredicted RBP5.87□□□□□ -1.47
VPS13B-209ENST00000521559 ADAMTSL4Q6UY14 1074 aa5.87□□□□□ -1.47
VPS13B-209ENST00000521559 PRR23CQ6ZRP0 262 aa5.87□□□□□ -1.47
VPS13B-209ENST00000521559 DDX54Q8TDD1 881 aaKnown RBP5.87□□□□□ -1.47
VPS13B-209ENST00000521559 RNF208Q9H0X6 261 aa5.87□□□□□ -1.47
VPS13B-209ENST00000521559 LIN7BQ9HAP6 207 aa5.87□□□□□ -1.47
VPS13B-209ENST00000521559 LOC100996750A0A140TA64 210 aa5.86□□□□□ -1.47
VPS13B-209ENST00000521559 A0A1W2PP55 124 aa5.86□□□□□ -1.47
VPS13B-209ENST00000521559 DHX15O43143 795 aaKnown RBP5.86□□□□□ -1.47
VPS13B-209ENST00000521559 SART1O43290 800 aaKnown RBP5.86□□□□□ -1.47
VPS13B-209ENST00000521559 KCNA1Q09470 495 aa5.86□□□□□ -1.47
VPS13B-209ENST00000521559 ANKRD34AQ69YU3 496 aa5.86□□□□□ -1.47
VPS13B-209ENST00000521559 VN1R5Q7Z5H4 357 aa5.86□□□□□ -1.47
VPS13B-209ENST00000521559 CCNJLQ8IV13 435 aa5.86□□□□□ -1.47
VPS13B-209ENST00000521559 AGGF1Q8N302 714 aaeCLIP5.86□□□□□ -1.47
VPS13B-209ENST00000521559 ALKBH8Q96BT7 664 aaKnown RBP5.86□□□□□ -1.47
VPS13B-209ENST00000521559 RUSC1Q9BVN2 902 aa5.86□□□□□ -1.47
VPS13B-209ENST00000521559 KRTAP4-6Q9BYQ5 205 aa5.86□□□□□ -1.47
VPS13B-209ENST00000521559 ZFYVE1Q9HBF4 777 aa5.86□□□□□ -1.47
VPS13B-209ENST00000521559 LATS2Q9NRM7 1088 aa5.86□□□□□ -1.47
VPS13B-209ENST00000521559 KCNK4Q9NYG8 393 aa5.86□□□□□ -1.47
VPS13B-209ENST00000521559 DCTN4Q9UJW0 460 aa5.86□□□□□ -1.47
VPS13B-209ENST00000521559 A0A096LPE4 126 aa5.85□□□□□ -1.47
VPS13B-209ENST00000521559 A0A1W2PPZ6 126 aa5.85□□□□□ -1.47
VPS13B-209ENST00000521559 SOX1O00570 391 aaPredicted RBP5.85□□□□□ -1.47
VPS13B-209ENST00000521559 TM4SF5O14894 197 aa5.85□□□□□ -1.47
VPS13B-209ENST00000521559 GSC2O15499 205 aa5.85□□□□□ -1.47
VPS13B-209ENST00000521559 DDX3YO15523 660 aaKnown RBP5.85□□□□□ -1.47
VPS13B-209ENST00000521559 WISP1O95388 367 aa5.85□□□□□ -1.47
VPS13B-209ENST00000521559 NLRP12P59046 1061 aa5.85□□□□□ -1.47
VPS13B-209ENST00000521559 HP1BP3Q5SSJ5 553 aaPredicted RBP5.85□□□□□ -1.47
VPS13B-209ENST00000521559 KIAA1211Q6ZU35 1233 aa5.85□□□□□ -1.47
VPS13B-209ENST00000521559 FOXD4L4Q8WXT5 416 aaPredicted RBP5.85□□□□□ -1.47
VPS13B-209ENST00000521559 NIF3L1Q9GZT8 377 aa5.85□□□□□ -1.47
VPS13B-209ENST00000521559 EHD4Q9H223 541 aa5.85□□□□□ -1.47
VPS13B-209ENST00000521559 CLEC4MQ9H2X3 399 aaPredicted RBP5.85□□□□□ -1.47
VPS13B-209ENST00000521559 PPP4R2Q9NY27 417 aa5.85□□□□□ -1.47
VPS13B-209ENST00000521559 RB1CC1Q8TDY2 1594 aa5.84□□□□□ -1.47
VPS13B-209ENST00000521559 MEGF11A6BM72 1044 aa5.84□□□□□ -1.47
VPS13B-209ENST00000521559 EIF1AYO14602 144 aaKnown RBP5.84□□□□□ -1.47
VPS13B-209ENST00000521559 ADAM11O75078 769 aa5.84□□□□□ -1.47
VPS13B-209ENST00000521559 ESRRAP11474 423 aaPredicted RBP5.84□□□□□ -1.47
VPS13B-209ENST00000521559 ITGB7P26010 798 aa5.84□□□□□ -1.47
VPS13B-209ENST00000521559 ORC1Q13415 861 aa5.84□□□□□ -1.47
VPS13B-209ENST00000521559 FDX2Q6P4F2 183 aa5.84□□□□□ -1.47
VPS13B-209ENST00000521559 UBASH3BQ8TF42 649 aa5.84□□□□□ -1.47
VPS13B-209ENST00000521559 CSRNP1Q96S65 589 aa5.84□□□□□ -1.47
VPS13B-209ENST00000521559 STOML1Q9UBI4 398 aa5.84□□□□□ -1.47
VPS13B-209ENST00000521559 TRAK1Q9UPV9 953 aa5.84□□□□□ -1.47
VPS13B-209ENST00000521559 RAXQ9Y2V3 346 aa5.84□□□□□ -1.47
VPS13B-209ENST00000521559 GPR182O15218 404 aa5.83□□□□□ -1.48
VPS13B-209ENST00000521559 GADD45BO75293 160 aaPredicted RBP5.83□□□□□ -1.48
VPS13B-209ENST00000521559 PTPN12Q05209 780 aaKnown RBP5.83□□□□□ -1.48
VPS13B-209ENST00000521559 PCDH1Q08174 1060 aa5.83□□□□□ -1.48
VPS13B-209ENST00000521559 NUTM2GQ5VZR2 741 aa5.83□□□□□ -1.48
VPS13B-209ENST00000521559 USPL1Q5W0Q7 1092 aa5.83□□□□□ -1.48
VPS13B-209ENST00000521559 ZSCAN29Q8IWY8 852 aaPredicted RBP5.83□□□□□ -1.48
VPS13B-209ENST00000521559 UTP4Q969X6 686 aaKnown RBP5.83□□□□□ -1.48
VPS13B-209ENST00000521559 CCDC74AQ96AQ1 378 aa5.83□□□□□ -1.48
VPS13B-209ENST00000521559 UBL7Q96S82 380 aaPredicted RBP5.83□□□□□ -1.48
VPS13B-209ENST00000521559 TCF12Q99081 682 aa5.83□□□□□ -1.48
VPS13B-209ENST00000521559 TRAIPQ9BWF2 469 aa5.83□□□□□ -1.48
VPS13B-209ENST00000521559 CYP4F12Q9HCS2 524 aa5.83□□□□□ -1.48
VPS13B-209ENST00000521559 NPHS2Q9NP85 383 aa5.83□□□□□ -1.48
VPS13B-209ENST00000521559 NLRP2Q9NX02 1062 aa5.83□□□□□ -1.48
VPS13B-209ENST00000521559 HIF3AQ9Y2N7 669 aa5.83□□□□□ -1.48
VPS13B-209ENST00000521559 SCO2A0A1W2PP80 73 aa5.82□□□□□ -1.48
VPS13B-209ENST00000521559 METTL12A8MUP2 240 aa5.82□□□□□ -1.48
VPS13B-209ENST00000521559 CYP11A1P05108 521 aa5.82□□□□□ -1.48
VPS13B-209ENST00000521559 MAPK1P28482 360 aa5.82□□□□□ -1.48
VPS13B-209ENST00000521559 PLCB3Q01970 1234 aa5.82□□□□□ -1.48
VPS13B-209ENST00000521559 GSTM4Q03013 218 aa5.82□□□□□ -1.48
VPS13B-209ENST00000521559 FAM46AQ96IP4 442 aaKnown RBP5.82□□□□□ -1.48
VPS13B-209ENST00000521559 USP26Q9BXU7 913 aa5.82□□□□□ -1.48
VPS13B-209ENST00000521559 GAS2O43903 313 aaKnown RBP5.81□□□□□ -1.48
VPS13B-209ENST00000521559 IGHA2P01877 340 aa5.81□□□□□ -1.48
VPS13B-209ENST00000521559 FSTP19883 344 aa5.81□□□□□ -1.48
VPS13B-209ENST00000521559 ITPKAP23677 461 aa5.81□□□□□ -1.48
VPS13B-209ENST00000521559 GRIA4P48058 902 aa5.81□□□□□ -1.48
VPS13B-209ENST00000521559 HNRNPUQ00839 825 aaKnown RBP eCLIP5.81□□□□□ -1.48
VPS13B-209ENST00000521559 RPS26P11Q5JNZ5 115 aaPredicted RBP5.81□□□□□ -1.48
VPS13B-209ENST00000521559 EXOSC6Q5RKV6 272 aaKnown RBP5.81□□□□□ -1.48
VPS13B-209ENST00000521559 TMC7Q7Z402 723 aa5.81□□□□□ -1.48
VPS13B-209ENST00000521559 Q8N3U1 123 aa5.81□□□□□ -1.48
VPS13B-209ENST00000521559 MYRFLQ96LU7 910 aa5.81□□□□□ -1.48
VPS13B-209ENST00000521559 IVNS1ABPQ9Y6Y0 642 aa5.81□□□□□ -1.48
VPS13B-209ENST00000521559 LOC100289279A0A1B0GTE1 492 aa5.8□□□□□ -1.48
VPS13B-209ENST00000521559 SPRED3Q2MJR0 410 aa5.8□□□□□ -1.48
VPS13B-209ENST00000521559 HGSNATQ68CP4 663 aa5.8□□□□□ -1.48
VPS13B-209ENST00000521559 PRPF40BQ6NWY9 871 aaKnown RBP5.8□□□□□ -1.48
VPS13B-209ENST00000521559 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.8□□□□□ -1.48
VPS13B-209ENST00000521559 CLEC10AQ8IUN9 316 aa5.8□□□□□ -1.48
VPS13B-209ENST00000521559 ARMC10Q8N2F6 343 aa5.8□□□□□ -1.48
VPS13B-209ENST00000521559 C12orf50Q8NA57 414 aaPredicted RBP5.8□□□□□ -1.48
VPS13B-209ENST00000521559 SMG8Q8ND04 991 aaKnown RBP5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms