RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 NAA15Q9BXJ9 866 aaKnown RBP4.83□□□□□ -1.64
VCAN-209ENST00000513016 TRIM6Q9C030 488 aaPredicted RBP4.83□□□□□ -1.64
VCAN-209ENST00000513016 TRIM37O94972 964 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 PRKCSHP14314 528 aaPredicted RBP4.83□□□□□ -1.64
VCAN-209ENST00000513016 BIRC2Q13490 618 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 SKIDA1Q1XH10 827 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 CERKQ8TCT0 537 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 HCLS1P14317 486 aaPredicted RBP4.83□□□□□ -1.64
VCAN-209ENST00000513016 STRN3Q13033 797 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 CDC37L1Q7L3B6 337 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 ANKRD44Q8N8A2 993 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 RPL13P26373 211 aaKnown RBP4.83□□□□□ -1.64
VCAN-209ENST00000513016 KRT2P35908 639 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 PRKG1Q13976 671 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 CCDC144CPQ8IYA2 1237 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 ALS2CR12Q96Q35 445 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 ASXL1Q8IXJ9 1541 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 TRIM75PA6NK02 468 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 GCOM1H8Y6P7 765 aaPredicted RBP4.83□□□□□ -1.64
VCAN-209ENST00000513016 MYZAPP0CAP1 466 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 PPP2R5BQ15173 497 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 FSIP1Q8NA03 581 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.83□□□□□ -1.64
VCAN-209ENST00000513016 ABT1Q9ULW3 272 aaKnown RBP4.83□□□□□ -1.64
VCAN-209ENST00000513016 POLR3AO14802 1390 aaPredicted RBP4.83□□□□□ -1.64
VCAN-209ENST00000513016 PLEKHG1Q9ULL1 1385 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 ECM2O94769 699 aaPredicted RBP4.83□□□□□ -1.64
VCAN-209ENST00000513016 GADL1Q6ZQY3 521 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 RSPH3Q86UC2 560 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 TAX1BP1Q86VP1 789 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 FAM212AQ96EL1 285 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 NOC2LQ9Y3T9 749 aaKnown RBP4.83□□□□□ -1.64
VCAN-209ENST00000513016 ATP7AQ04656 1500 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 COL17A1Q9UMD9 1497 aaPredicted RBP4.83□□□□□ -1.64
VCAN-209ENST00000513016 CCDC171Q6TFL3 1326 aa4.83□□□□□ -1.64
VCAN-209ENST00000513016 BBOX1O75936 387 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 SLU7O95391 586 aaKnown RBP4.82□□□□□ -1.64
VCAN-209ENST00000513016 TRIM27P14373 513 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 FERP16591 822 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 MSL1Q68DK7 614 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 USP40Q9NVE5 1235 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 PSMA7O14818 248 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 TOP1P11387 765 aaKnown RBP4.82□□□□□ -1.64
VCAN-209ENST00000513016 HOXD10P28358 340 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 CNGA1P29973 690 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 HAUS3Q68CZ6 603 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 CCDC65Q8IXS2 484 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 MRPL50Q8N5N7 158 aaKnown RBP4.82□□□□□ -1.64
VCAN-209ENST00000513016 C2orf69Q8N8R5 385 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 KIAA1524Q8TCG1 905 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 MCF2L2Q86YR7 1114 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 SEPT12Q8IYM1 358 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 KCNG4Q8TDN1 519 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 FAM89AQ96GI7 184 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 TRIM47Q96LD4 638 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 SPAG5Q96R06 1193 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 FNBP1Q96RU3 617 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 AP5M1Q9H0R1 490 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 LEMD3Q9Y2U8 911 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 PTPDC1A2A3K4 754 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 GRIN3BO60391 1043 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 GAS8O95995 478 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 MIGA1Q8NAN2 632 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 TMEM87BQ96K49 555 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 RNF216Q9NWF9 866 aaPredicted RBP4.82□□□□□ -1.64
VCAN-209ENST00000513016 SAP30BPQ9UHR5 308 aaKnown RBP4.82□□□□□ -1.64
VCAN-209ENST00000513016 NLRP1Q9C000 1473 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 KIF5CO60282 957 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 CAVIN2O95810 425 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 USP14P54578 494 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 FAM47CQ5HY64 1035 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 FAM193BQ96PV7 902 aaPredicted RBP4.82□□□□□ -1.64
VCAN-209ENST00000513016 CWC15Q9P013 229 aaKnown RBP4.82□□□□□ -1.64
VCAN-209ENST00000513016 GOLGA6L10A0A0M3HER8 536 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 MBD4O95243 580 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 IREB2P48200 963 aaKnown RBP4.82□□□□□ -1.64
VCAN-209ENST00000513016 GTF2IP78347 998 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 KIF4BQ2VIQ3 1234 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 TTLL7Q6ZT98 887 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 FERMT3Q86UX7 667 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 TTF2Q9UNY4 1162 aaKnown RBP4.82□□□□□ -1.64
VCAN-209ENST00000513016 DISP3Q9P2K9 1392 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 LOC102724428A0A0B4J2F2 783 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 BICDL2A1A5D9 508 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 MACROD2A1Z1Q3 448 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 PALM3A6NDB9 673 aaPredicted RBP4.82□□□□□ -1.64
VCAN-209ENST00000513016 A1BGP04217 495 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 SIK1P57059 783 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 WDR44Q5JSH3 913 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 ODR4Q5SWX8 454 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 RRAGBQ5VZM2 374 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 DTHD1Q6ZMT9 781 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 LUZP1Q86V48 1076 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 TTC16Q8NEE8 873 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 GABPB2Q8TAK5 448 aaPredicted RBP4.82□□□□□ -1.64
VCAN-209ENST00000513016 CTAGE1Q96RT6 745 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 CD2APQ9Y5K6 639 aa4.82□□□□□ -1.64
VCAN-209ENST00000513016 CEP170Q5SW79 1584 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 RTL1A6NKG5 1358 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 SLC1A4P43007 532 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms