RNA–Protein interactions for RNA: ENST00000508249.1

UBE2D3-223, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 4

Gene UBE2D3, Length 604 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-223	ENST00000508249	MS4A4A	Q96JQ5	239 aa		11.81	□□□□□ -0.52
UBE2D3-223	ENST00000508249	DEFB129	Q9H1M3	183 aa		11.81	□□□□□ -0.52
UBE2D3-223	ENST00000508249	PRUNE2	Q8WUY3	3088 aa		11.8	□□□□□ -0.52
UBE2D3-223	ENST00000508249	SOX1	O00570	391 aa	Predicted RBP	11.8	□□□□□ -0.52
UBE2D3-223	ENST00000508249	PDE8A	O60658	829 aa		11.8	□□□□□ -0.52
UBE2D3-223	ENST00000508249	PCCA	P05165	728 aa	Predicted RBP	11.8	□□□□□ -0.52
UBE2D3-223	ENST00000508249	CCDC152	Q4G0S7	254 aa		11.8	□□□□□ -0.52
UBE2D3-223	ENST00000508249	DUSP27	Q5VZP5	1158 aa		11.8	□□□□□ -0.52
UBE2D3-223	ENST00000508249	KIAA0825	Q8IV33	1275 aa		11.8	□□□□□ -0.52
UBE2D3-223	ENST00000508249	DBF4	Q9UBU7	674 aa	Predicted RBP	11.8	□□□□□ -0.52
UBE2D3-223	ENST00000508249	MINPP1	Q9UNW1	487 aa		11.8	□□□□□ -0.52
UBE2D3-223	ENST00000508249	MGAM	O43451	1857 aa		11.8	□□□□□ -0.52
UBE2D3-223	ENST00000508249	ZNF804B	A4D1E1	1349 aa		11.8	□□□□□ -0.52
UBE2D3-223	ENST00000508249	CCT4	P50991	539 aa	Known RBP	11.79	□□□□□ -0.52
UBE2D3-223	ENST00000508249	SLC9C1	Q4G0N8	1177 aa		11.79	□□□□□ -0.52
UBE2D3-223	ENST00000508249	ANKRD18A	Q8IVF6	992 aa		11.79	□□□□□ -0.52
UBE2D3-223	ENST00000508249	CDAN1	Q8IWY9	1227 aa		11.79	□□□□□ -0.52
UBE2D3-223	ENST00000508249	OGFOD1	Q8N543	542 aa		11.79	□□□□□ -0.52
UBE2D3-223	ENST00000508249	MTMR14	Q8NCE2	650 aa		11.79	□□□□□ -0.52
UBE2D3-223	ENST00000508249	SH3TC2	Q8TF17	1288 aa		11.79	□□□□□ -0.52
UBE2D3-223	ENST00000508249	CNKSR2	Q8WXI2	1034 aa		11.79	□□□□□ -0.52
UBE2D3-223	ENST00000508249	SLC10A4	Q96EP9	437 aa		11.79	□□□□□ -0.52
UBE2D3-223	ENST00000508249	ARHGAP39	Q9C0H5	1083 aa		11.79	□□□□□ -0.52
UBE2D3-223	ENST00000508249	MYH16	Q9H6N6	1097 aa		11.79	□□□□□ -0.52
UBE2D3-223	ENST00000508249	PHAX	Q9H814	394 aa	Known RBP	11.79	□□□□□ -0.52
UBE2D3-223	ENST00000508249	USP2	O75604	605 aa	Predicted RBP	11.78	□□□□□ -0.52
UBE2D3-223	ENST00000508249	CTSW	P56202	376 aa		11.78	□□□□□ -0.52
UBE2D3-223	ENST00000508249	NBPF12	Q5TAG4	269 aa	Predicted RBP	11.78	□□□□□ -0.52
UBE2D3-223	ENST00000508249	BRI3BP	Q8WY22	251 aa		11.78	□□□□□ -0.52
UBE2D3-223	ENST00000508249	TMEM106C	Q9BVX2	250 aa		11.78	□□□□□ -0.52
UBE2D3-223	ENST00000508249	COA1	Q9GZY4	146 aa		11.78	□□□□□ -0.52
UBE2D3-223	ENST00000508249	GREM2	Q9H772	168 aa		11.78	□□□□□ -0.52
UBE2D3-223	ENST00000508249	BSDC1	Q9NW68	430 aa	Predicted RBP	11.78	□□□□□ -0.52
UBE2D3-223	ENST00000508249	HYPK	Q9NX55	129 aa		11.78	□□□□□ -0.52
UBE2D3-223	ENST00000508249	UNCX	A6NJT0	531 aa		11.77	□□□□□ -0.53
UBE2D3-223	ENST00000508249	CTGF	P29279	349 aa		11.77	□□□□□ -0.53
UBE2D3-223	ENST00000508249	MMP14	P50281	582 aa		11.77	□□□□□ -0.53
UBE2D3-223	ENST00000508249	CCDC30	Q5VVM6	783 aa		11.77	□□□□□ -0.53
UBE2D3-223	ENST00000508249	FAM43A	Q8N2R8	423 aa		11.77	□□□□□ -0.53
UBE2D3-223	ENST00000508249	CCDC191	Q8NCU4	936 aa		11.77	□□□□□ -0.53
UBE2D3-223	ENST00000508249	SLC17A8	Q8NDX2	589 aa		11.77	□□□□□ -0.53
UBE2D3-223	ENST00000508249	TTLL11	Q8NHH1	800 aa		11.77	□□□□□ -0.53
UBE2D3-223	ENST00000508249	FBXW7	Q969H0	707 aa		11.77	□□□□□ -0.53
UBE2D3-223	ENST00000508249	MYD88	Q99836	296 aa		11.77	□□□□□ -0.53
UBE2D3-223	ENST00000508249	PPP2R3B	Q9Y5P8	575 aa		11.77	□□□□□ -0.53
UBE2D3-223	ENST00000508249	MUC3A	Q02505	3323 aa		11.77	□□□□□ -0.53
UBE2D3-223	ENST00000508249	SPDYE2B	A6NHP3	402 aa		11.76	□□□□□ -0.53
UBE2D3-223	ENST00000508249	MYC	P01106	439 aa	Predicted RBP	11.76	□□□□□ -0.53
UBE2D3-223	ENST00000508249	SPDYE6	P0CI01	402 aa		11.76	□□□□□ -0.53
UBE2D3-223	ENST00000508249	GOLGA2	Q08379	1002 aa		11.76	□□□□□ -0.53
UBE2D3-223	ENST00000508249	MTFR1	Q15390	333 aa		11.76	□□□□□ -0.53
UBE2D3-223	ENST00000508249	TTLL5	Q6EMB2	1281 aa		11.76	□□□□□ -0.53
UBE2D3-223	ENST00000508249	OPTN	Q96CV9	577 aa		11.76	□□□□□ -0.53
UBE2D3-223	ENST00000508249	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.76	□□□□□ -0.53
UBE2D3-223	ENST00000508249	CLRN2	A0PK11	232 aa		11.75	□□□□□ -0.53
UBE2D3-223	ENST00000508249	IGKV5-2	P06315	115 aa		11.75	□□□□□ -0.53
UBE2D3-223	ENST00000508249	GTF2I	P78347	998 aa		11.75	□□□□□ -0.53
UBE2D3-223	ENST00000508249	SLC4A8	Q2Y0W8	1093 aa		11.75	□□□□□ -0.53
UBE2D3-223	ENST00000508249	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	11.75	□□□□□ -0.53
UBE2D3-223	ENST00000508249	LRCH3	Q96II8	777 aa		11.75	□□□□□ -0.53
UBE2D3-223	ENST00000508249	PRMT6	Q96LA8	375 aa	Predicted RBP	11.75	□□□□□ -0.53
UBE2D3-223	ENST00000508249	TEPSIN	Q96N21	525 aa		11.75	□□□□□ -0.53
UBE2D3-223	ENST00000508249	STK31	Q9BXU1	1019 aa		11.75	□□□□□ -0.53
UBE2D3-223	ENST00000508249	CWC25	Q9NXE8	425 aa	Predicted RBP	11.75	□□□□□ -0.53
UBE2D3-223	ENST00000508249	ZNF521	Q96K83	1311 aa		11.75	□□□□□ -0.53
UBE2D3-223	ENST00000508249	FANCI	Q9NVI1	1328 aa		11.75	□□□□□ -0.53
UBE2D3-223	ENST00000508249	SNAP23	O00161	211 aa		11.74	□□□□□ -0.53
UBE2D3-223	ENST00000508249	PPP1R12B	O60237	982 aa	Predicted RBP	11.74	□□□□□ -0.53
UBE2D3-223	ENST00000508249	TWISTNB	Q3B726	338 aa	Predicted RBP	11.74	□□□□□ -0.53
UBE2D3-223	ENST00000508249	RIC3	Q7Z5B4	369 aa		11.74	□□□□□ -0.53
UBE2D3-223	ENST00000508249	ANKRD13A	Q8IZ07	590 aa		11.74	□□□□□ -0.53
UBE2D3-223	ENST00000508249	CDC5L	Q99459	802 aa	Known RBP	11.74	□□□□□ -0.53
UBE2D3-223	ENST00000508249	ELP3	Q9H9T3	547 aa		11.74	□□□□□ -0.53
UBE2D3-223	ENST00000508249	CDH23	Q9H251	3354 aa		11.74	□□□□□ -0.53
UBE2D3-223	ENST00000508249		E9PSI1	815 aa		11.73	□□□□□ -0.53
UBE2D3-223	ENST00000508249	DDX58	O95786	925 aa	Known RBP	11.73	□□□□□ -0.53
UBE2D3-223	ENST00000508249	LACTB	P83111	547 aa	Predicted RBP	11.73	□□□□□ -0.53
UBE2D3-223	ENST00000508249	DLGAP5	Q15398	846 aa		11.73	□□□□□ -0.53
UBE2D3-223	ENST00000508249	TAF1C	Q15572	869 aa	Predicted RBP	11.73	□□□□□ -0.53
UBE2D3-223	ENST00000508249	NBPF11	Q86T75	865 aa		11.73	□□□□□ -0.53
UBE2D3-223	ENST00000508249	C8orf58	Q8NAV2	365 aa		11.73	□□□□□ -0.53
UBE2D3-223	ENST00000508249	TSR2	Q969E8	191 aa	Known RBP	11.73	□□□□□ -0.53
UBE2D3-223	ENST00000508249	ADGRA2	Q96PE1	1338 aa		11.73	□□□□□ -0.53
UBE2D3-223	ENST00000508249	METTL22	Q9BUU2	404 aa	Predicted RBP	11.73	□□□□□ -0.53
UBE2D3-223	ENST00000508249	CD209	Q9NNX6	404 aa		11.73	□□□□□ -0.53
UBE2D3-223	ENST00000508249	LEMD3	Q9Y2U8	911 aa		11.73	□□□□□ -0.53
UBE2D3-223	ENST00000508249	CCL15-CCL14	A0A0B4J2E2	113 aa		11.72	□□□□□ -0.53
UBE2D3-223	ENST00000508249	IREB2	P48200	963 aa	Known RBP	11.72	□□□□□ -0.53
UBE2D3-223	ENST00000508249	MNX1	P50219	401 aa	Predicted RBP	11.72	□□□□□ -0.53
UBE2D3-223	ENST00000508249	VGLL4	Q14135	290 aa		11.72	□□□□□ -0.53
UBE2D3-223	ENST00000508249	RASA3	Q14644	834 aa		11.72	□□□□□ -0.53
UBE2D3-223	ENST00000508249	CCL15	Q16663	113 aa		11.72	□□□□□ -0.53
UBE2D3-223	ENST00000508249	CFAP100	Q494V2	611 aa		11.72	□□□□□ -0.53
UBE2D3-223	ENST00000508249	OTUD7B	Q6GQQ9	843 aa		11.72	□□□□□ -0.53
UBE2D3-223	ENST00000508249	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	11.72	□□□□□ -0.53
UBE2D3-223	ENST00000508249	SALL2	Q9Y467	1007 aa	Predicted RBP	11.72	□□□□□ -0.53
UBE2D3-223	ENST00000508249	PTPRF	P10586	1907 aa		11.72	□□□□□ -0.53
UBE2D3-223	ENST00000508249	DNAH12	Q6ZR08	3092 aa		11.71	□□□□□ -0.53
UBE2D3-223	ENST00000508249	ELL2	O00472	640 aa	Predicted RBP	11.71	□□□□□ -0.53
UBE2D3-223	ENST00000508249	ZBTB7B	O15156	539 aa	Predicted RBP	11.71	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms