RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 BCS1LQ9Y276 419 aa8.78□□□□□ -1
NUP54-204ENST00000506098 COL4A5P29400 1685 aa8.78□□□□□ -1
NUP54-204ENST00000506098 COL1A1P02452 1464 aaPredicted RBP8.77□□□□□ -1
NUP54-204ENST00000506098 ADAMTSL1Q8N6G6 1762 aa8.77□□□□□ -1.01
NUP54-204ENST00000506098 KIAA2012Q0VF49 1180 aa8.77□□□□□ -1.01
NUP54-204ENST00000506098 SCARF1Q14162 830 aa8.77□□□□□ -1.01
NUP54-204ENST00000506098 WASHC4Q2M389 1173 aa8.77□□□□□ -1.01
NUP54-204ENST00000506098 ZC3H12CQ9C0D7 883 aaKnown RBP8.77□□□□□ -1.01
NUP54-204ENST00000506098 COA1Q9GZY4 146 aa8.77□□□□□ -1.01
NUP54-204ENST00000506098 BOLA2Q9H3K6 86 aa8.77□□□□□ -1.01
NUP54-204ENST00000506098 CD209Q9NNX6 404 aa8.77□□□□□ -1.01
NUP54-204ENST00000506098 HMG20BQ9P0W2 317 aa8.77□□□□□ -1.01
NUP54-204ENST00000506098 ZNF219Q9P2Y4 722 aaPredicted RBP8.77□□□□□ -1.01
NUP54-204ENST00000506098 DENND2AQ9ULE3 1009 aa8.77□□□□□ -1.01
NUP54-204ENST00000506098 RFX7Q2KHR2 1363 aa8.76□□□□□ -1.01
NUP54-204ENST00000506098 NFKBIEO00221 500 aa8.76□□□□□ -1.01
NUP54-204ENST00000506098 IGSF3O75054 1194 aa8.76□□□□□ -1.01
NUP54-204ENST00000506098 SDSP20132 328 aa8.76□□□□□ -1.01
NUP54-204ENST00000506098 RASGRF1Q13972 1273 aa8.76□□□□□ -1.01
NUP54-204ENST00000506098 PODNQ7Z5L7 613 aa8.76□□□□□ -1.01
NUP54-204ENST00000506098 VPS37DQ86XT2 251 aa8.76□□□□□ -1.01
NUP54-204ENST00000506098 CNTROBQ8N137 903 aa8.76□□□□□ -1.01
NUP54-204ENST00000506098 SPATA5Q8NB90 893 aa8.76□□□□□ -1.01
NUP54-204ENST00000506098 EVI5LQ96CN4 794 aa8.76□□□□□ -1.01
NUP54-204ENST00000506098 PKNOX2Q96KN3 472 aa8.76□□□□□ -1.01
NUP54-204ENST00000506098 GPR101Q96P66 508 aaPredicted RBP8.76□□□□□ -1.01
NUP54-204ENST00000506098 FAM205AQ6ZU69 1335 aa8.76□□□□□ -1.01
NUP54-204ENST00000506098 SALL1Q9NSC2 1324 aa8.76□□□□□ -1.01
NUP54-204ENST00000506098 LAMB1P07942 1786 aa8.76□□□□□ -1.01
NUP54-204ENST00000506098 SCN4AP35499 1836 aa8.75□□□□□ -1.01
NUP54-204ENST00000506098 NAV1Q8NEY1 1877 aa8.75□□□□□ -1.01
NUP54-204ENST00000506098 RIMBP2O15034 1052 aa8.75□□□□□ -1.01
NUP54-204ENST00000506098 CYP2E1P05181 493 aaPredicted RBP8.75□□□□□ -1.01
NUP54-204ENST00000506098 IARSP41252 1262 aaKnown RBP8.75□□□□□ -1.01
NUP54-204ENST00000506098 ZAP70P43403 619 aa8.75□□□□□ -1.01
NUP54-204ENST00000506098 TTF1Q15361 905 aaPredicted RBP8.75□□□□□ -1.01
NUP54-204ENST00000506098 TAOK3Q9H2K8 898 aa8.75□□□□□ -1.01
NUP54-204ENST00000506098 PAG1Q9NWQ8 432 aa8.75□□□□□ -1.01
NUP54-204ENST00000506098 TRIM6-TRIM34B2RNG4 842 aa8.74□□□□□ -1.01
NUP54-204ENST00000506098 PPIP5K2O43314 1243 aa8.74□□□□□ -1.01
NUP54-204ENST00000506098 YBX3P16989 372 aaKnown RBP eCLIP8.74□□□□□ -1.01
NUP54-204ENST00000506098 FKBP1AP62942 108 aaKnown RBP8.74□□□□□ -1.01
NUP54-204ENST00000506098 AOC3Q16853 763 aa8.74□□□□□ -1.01
NUP54-204ENST00000506098 PI16Q6UXB8 463 aa8.74□□□□□ -1.01
NUP54-204ENST00000506098 HOMEZQ8IX15 550 aa8.74□□□□□ -1.01
NUP54-204ENST00000506098 KBTBD3Q8NAB2 608 aa8.74□□□□□ -1.01
NUP54-204ENST00000506098 WDR66Q8TBY9 1149 aa8.74□□□□□ -1.01
NUP54-204ENST00000506098 RILPL2Q969X0 211 aa8.74□□□□□ -1.01
NUP54-204ENST00000506098 ANTXR1Q9H6X2 564 aa8.74□□□□□ -1.01
NUP54-204ENST00000506098 SNRKQ9NRH2 765 aa8.74□□□□□ -1.01
NUP54-204ENST00000506098 GOLIM4O00461 696 aa8.73□□□□□ -1.01
NUP54-204ENST00000506098 ECE2O60344 883 aa8.73□□□□□ -1.01
NUP54-204ENST00000506098 MAP4K4O95819 1239 aaPredicted RBP8.73□□□□□ -1.01
NUP54-204ENST00000506098 DOK7Q18PE1 504 aa8.73□□□□□ -1.01
NUP54-204ENST00000506098 STRIP1Q5VSL9 837 aa8.73□□□□□ -1.01
NUP54-204ENST00000506098 TMED8Q6PL24 325 aaPredicted RBP8.73□□□□□ -1.01
NUP54-204ENST00000506098 ZGPATQ8N5A5 531 aaKnown RBP8.73□□□□□ -1.01
NUP54-204ENST00000506098 TBC1D22AQ8WUA7 517 aa8.73□□□□□ -1.01
NUP54-204ENST00000506098 EDC3Q96F86 508 aaKnown RBP8.73□□□□□ -1.01
NUP54-204ENST00000506098 DNAJC2Q99543 621 aaKnown RBP8.73□□□□□ -1.01
NUP54-204ENST00000506098 ZNF277Q9NRM2 450 aaPredicted RBP8.73□□□□□ -1.01
NUP54-204ENST00000506098 WWC3Q9ULE0 1092 aa8.73□□□□□ -1.01
NUP54-204ENST00000506098 IQSEC3Q9UPP2 1182 aaPredicted RBP8.73□□□□□ -1.01
NUP54-204ENST00000506098 SUGT1Q9Y2Z0 365 aa8.73□□□□□ -1.01
NUP54-204ENST00000506098 NDUFB9Q9Y6M9 179 aa8.73□□□□□ -1.01
NUP54-204ENST00000506098 DDX60LQ5H9U9 1706 aaKnown RBP8.72□□□□□ -1.01
NUP54-204ENST00000506098 YDJCA8MPS7 323 aa8.72□□□□□ -1.01
NUP54-204ENST00000506098 G3V3G9 751 aa8.72□□□□□ -1.01
NUP54-204ENST00000506098 HIP1O00291 1037 aa8.72□□□□□ -1.01
NUP54-204ENST00000506098 CDC45O75419 566 aa8.72□□□□□ -1.01
NUP54-204ENST00000506098 FRAT2O75474 233 aaPredicted RBP8.72□□□□□ -1.01
NUP54-204ENST00000506098 ZFYP08048 801 aaPredicted RBP8.72□□□□□ -1.01
NUP54-204ENST00000506098 CHMLP26374 656 aa8.72□□□□□ -1.01
NUP54-204ENST00000506098 PRELPP51888 382 aa8.72□□□□□ -1.01
NUP54-204ENST00000506098 LRRFIP1Q32MZ4 808 aaKnown RBP8.72□□□□□ -1.01
NUP54-204ENST00000506098 C8orf34Q49A92 452 aa8.72□□□□□ -1.01
NUP54-204ENST00000506098 DCAF8Q5TAQ9 597 aa8.72□□□□□ -1.01
NUP54-204ENST00000506098 SPTY2D1Q68D10 685 aaPredicted RBP8.72□□□□□ -1.01
NUP54-204ENST00000506098 TTLL5Q6EMB2 1281 aa8.72□□□□□ -1.01
NUP54-204ENST00000506098 LARGE2Q8N3Y3 721 aa8.72□□□□□ -1.01
NUP54-204ENST00000506098 DBNDD1Q9H9R9 158 aa8.72□□□□□ -1.01
NUP54-204ENST00000506098 PIH1D3Q9NQM4 214 aaKnown RBP8.72□□□□□ -1.01
NUP54-204ENST00000506098 TCRBV5S4A2TA0A5A2 114 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 USP17L3A6NCW0 530 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 USP17L4A6NCW7 530 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 FZD9O00144 591 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 GRIN3BO60391 1043 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 VIL1P09327 827 aaKnown RBP8.71□□□□□ -1.02
NUP54-204ENST00000506098 LMNB1P20700 586 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 ADD2P35612 726 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 GTF2IP78347 998 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 RASSF7Q02833 373 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 UBE3CQ15386 1083 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 DACT2Q5SW24 774 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 ZSCAN25Q6NSZ9 544 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 TBC1D9Q6ZT07 1266 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 ARHGAP27Q6ZUM4 889 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 USP17L1Q7RTZ2 530 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 NIM1KQ8IY84 436 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 FSD1Q9BTV5 496 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms