RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 TDRD7Q8NHU6 1098 aaKnown RBP18.91■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 CFAP45Q9UL16 551 aa18.91■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 BCL9O00512 1426 aa18.91■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 PTPDC1A2A3K4 754 aa18.9■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 HMGN5P82970 282 aaKnown RBP18.9■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 CCDC191Q8NCU4 936 aa18.9■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 SLC4A9Q96Q91 983 aa18.9■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 PUS3Q9BZE2 481 aaKnown RBP18.9■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 RCOR1Q9UKL0 485 aa18.9■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 SALL1Q9NSC2 1324 aa18.9■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 UTRNP46939 3433 aa18.9■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 A0A1B0GUL7 405 aa18.9■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 GOLGA6L6A8MZA4 724 aa18.9■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 RNF113AO15541 343 aaKnown RBP18.9■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 CIAO1O76071 339 aa18.9■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 IFIT1P09914 478 aaKnown RBP18.9■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 ZBTB3Q9H5J0 574 aa18.9■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 PTGS1P23219 599 aa18.89■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 GTF2F1P35269 517 aaKnown RBP eCLIP18.89■□□□□ 0.612e-9■■■■□ 21.1
MSH5-SAPCD1-208ENST00000498473 PLA2G4DQ86XP0 818 aa18.89■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 BTAF1O14981 1849 aa18.89■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 M0R2C6 588 aa18.89■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 CCT2P78371 535 aaKnown RBP18.89■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 SMAP1Q8IYB5 467 aaPredicted RBP18.89■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 FTOQ9C0B1 505 aaKnown RBP eCLIP18.89■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 DNAJC25Q9H1X3 360 aa18.89■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 ZNF75DP51815 510 aa18.88■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 FOSBP53539 338 aa18.88■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 CEBPZQ03701 1054 aaKnown RBP18.88■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.88■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 NCOA5Q9HCD5 579 aaKnown RBP18.88■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 PDIA3P30101 505 aaKnown RBP18.88■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 BCL11BQ9C0K0 894 aaPredicted RBP18.88■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 ZNF165P49910 485 aa18.87■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 TTLL5Q6EMB2 1281 aa18.87■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 CHST3Q7LGC8 479 aa18.87■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 OSBP2Q969R2 916 aa18.87■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 ZNF274Q96GC6 653 aaPredicted RBP18.87■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 GOLPH3LQ9H4A5 285 aa18.87■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 ZNF330Q9Y3S2 320 aaPredicted RBP18.87■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 FOXP2O15409 715 aa18.86■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 USP28Q96RU2 1077 aa18.86■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 CCDC186Q7Z3E2 898 aa18.86■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 TSC1Q92574 1164 aa18.86■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 ISCA1Q9BUE6 129 aa18.86■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 NRBP1Q9UHY1 535 aa18.86■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 SNW1Q13573 536 aaKnown RBP18.85■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 IQCB1Q15051 598 aa18.85■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 CCAR1Q8IX12 1150 aaKnown RBP18.85■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 FBXL16Q8N461 479 aa18.85■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 FDPSP14324 419 aaKnown RBP18.85■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 EVCP57679 992 aa18.85■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 FAM196AQ6ZSG2 479 aa18.85■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.85■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 MTERF4Q7Z6M4 381 aaKnown RBP18.85■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 DNAJC10Q8IXB1 793 aa18.85■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 TRIM5Q9C035 493 aa18.85■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 PPFIA3O75145 1194 aa18.84■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 ADORA1P30542 326 aa18.84■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 ZNF710Q8N1W2 664 aa18.84■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 ENGASEQ8NFI3 743 aa18.84■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 CEP126Q9P2H0 1117 aa18.84■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 LRMPQ12912 555 aa18.84■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 ATL3Q6DD88 541 aa18.84■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 C11orf57Q6ZUT1 292 aaPredicted RBP18.84■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 GPHNQ9NQX3 736 aaPredicted RBP18.84■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 KIF3AQ9Y496 699 aa18.84■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 CARMIL3Q8ND23 1372 aa18.83■□□□□ 0.61
MSH5-SAPCD1-208ENST00000498473 CAVIN2O95810 425 aa18.83■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 GUCY1B3Q02153 619 aa18.83■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 CTAGE5O15320 804 aa18.82■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 ATP6V1AP38606 617 aa18.82■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 ZNF396Q96N95 335 aaPredicted RBP18.82■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 DDX60Q8IY21 1712 aaKnown RBP18.82■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 FKBP4Q02790 459 aaKnown RBP eCLIP18.82■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 TCIRG1Q13488 830 aa18.82■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 ITPK1Q13572 414 aa18.82■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 XAGE2Q96GT9 111 aa18.82■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 NAP1L2Q9ULW6 460 aaPredicted RBP18.82■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 NHSQ6T4R5 1651 aa18.82■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 SCARF1Q14162 830 aa18.81■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 ZSCAN25Q6NSZ9 544 aa18.81■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 LOC102724428A0A0B4J2F2 783 aa18.81■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 APBA3O96018 575 aa18.81■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 SIK1P57059 783 aa18.81■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 TAF7LQ5H9L4 462 aa18.81■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 SARM1Q6SZW1 724 aa18.81■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 DRC7Q8IY82 874 aa18.81■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 CDC25BP30305 580 aa18.8■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 CCDC57Q2TAC2 916 aa18.8■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 CCDC144BQ3MJ40 725 aa18.8■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 CCDC158Q5M9N0 1113 aa18.8■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 TTC39AQ5SRH9 613 aa18.8■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 DEFB132Q7Z7B7 95 aa18.8■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 CCDC144CPQ8IYA2 1237 aa18.8■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 FBXO3Q9UK99 471 aa18.8■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 MYH7P12883 1935 aa18.8■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 FAM160A1Q05DH4 1040 aa18.8■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 TRIM28Q13263 835 aaKnown RBP18.8■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 STX1AQ16623 288 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms