RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 OCLNQ16625 522 aa5.68□□□□□ -1.5
DEPDC1-204ENST00000489862 SWI5Q1ZZU3 235 aa5.68□□□□□ -1.5
DEPDC1-204ENST00000489862 GLIS3Q8NEA6 775 aa5.68□□□□□ -1.5
DEPDC1-204ENST00000489862 RELTQ969Z4 430 aa5.68□□□□□ -1.5
DEPDC1-204ENST00000489862 RC3H2Q9HBD1 1191 aaKnown RBP5.68□□□□□ -1.5
DEPDC1-204ENST00000489862 USP20Q9Y2K6 914 aa5.68□□□□□ -1.5
DEPDC1-204ENST00000489862 J3QW42 95 aa5.67□□□□□ -1.5
DEPDC1-204ENST00000489862 OPLAHO14841 1288 aa5.67□□□□□ -1.5
DEPDC1-204ENST00000489862 SASH3O75995 380 aa5.67□□□□□ -1.5
DEPDC1-204ENST00000489862 COX20Q5RI15 118 aa5.67□□□□□ -1.5
DEPDC1-204ENST00000489862 TMEM164Q5U3C3 297 aa5.67□□□□□ -1.5
DEPDC1-204ENST00000489862 CAPN12Q6ZSI9 719 aa5.67□□□□□ -1.5
DEPDC1-204ENST00000489862 AMIGO3Q86WK7 504 aa5.67□□□□□ -1.5
DEPDC1-204ENST00000489862 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.67□□□□□ -1.5
DEPDC1-204ENST00000489862 ATG7O95352 703 aa5.66□□□□□ -1.5
DEPDC1-204ENST00000489862 RANGAP1P46060 587 aaPredicted RBP5.66□□□□□ -1.5
DEPDC1-204ENST00000489862 ARSDP51689 593 aa5.66□□□□□ -1.5
DEPDC1-204ENST00000489862 CCDC97Q96F63 343 aaPredicted RBP5.66□□□□□ -1.5
DEPDC1-204ENST00000489862 MKNK1Q9BUB5 465 aa5.66□□□□□ -1.5
DEPDC1-204ENST00000489862 SAP130Q9H0E3 1048 aa5.66□□□□□ -1.5
DEPDC1-204ENST00000489862 TRIM33Q9UPN9 1127 aa5.66□□□□□ -1.5
DEPDC1-204ENST00000489862 NFKBIBQ15653 356 aa5.66□□□□□ -1.5
DEPDC1-204ENST00000489862 DUSP27Q5VZP5 1158 aa5.66□□□□□ -1.5
DEPDC1-204ENST00000489862 TREML1Q86YW5 311 aa5.66□□□□□ -1.5
DEPDC1-204ENST00000489862 FAM95CA0A1B0GW59 222 aa5.65□□□□□ -1.51
DEPDC1-204ENST00000489862 NAA30Q147X3 362 aaPredicted RBP5.65□□□□□ -1.51
DEPDC1-204ENST00000489862 COL26A1Q96A83 441 aa5.65□□□□□ -1.51
DEPDC1-204ENST00000489862 PBXIP1Q96AQ6 731 aa5.65□□□□□ -1.51
DEPDC1-204ENST00000489862 BORCS6Q96GS4 357 aa5.65□□□□□ -1.51
DEPDC1-204ENST00000489862 CXXC1Q9P0U4 656 aaPredicted RBP5.65□□□□□ -1.51
DEPDC1-204ENST00000489862 SERPINA10Q9UK55 444 aa5.65□□□□□ -1.51
DEPDC1-204ENST00000489862 RTCBQ9Y3I0 505 aaKnown RBP5.65□□□□□ -1.51
DEPDC1-204ENST00000489862 FSCN2O14926 492 aa5.64□□□□□ -1.51
DEPDC1-204ENST00000489862 CDC27P30260 824 aa5.64□□□□□ -1.51
DEPDC1-204ENST00000489862 MLANAQ16655 118 aa5.64□□□□□ -1.51
DEPDC1-204ENST00000489862 SGO2Q562F6 1265 aa5.64□□□□□ -1.51
DEPDC1-204ENST00000489862 FAM26DQ5JW98 314 aa5.64□□□□□ -1.51
DEPDC1-204ENST00000489862 ETFBKMTQ8IXQ9 262 aa5.64□□□□□ -1.51
DEPDC1-204ENST00000489862 RGL4Q8IZJ4 473 aa5.64□□□□□ -1.51
DEPDC1-204ENST00000489862 CMTR1Q8N1G2 835 aaKnown RBP5.64□□□□□ -1.51
DEPDC1-204ENST00000489862 UBASH3BQ8TF42 649 aa5.64□□□□□ -1.51
DEPDC1-204ENST00000489862 BCL7CQ8WUZ0 217 aaPredicted RBP5.64□□□□□ -1.51
DEPDC1-204ENST00000489862 SLAIN2Q9P270 581 aa5.64□□□□□ -1.51
DEPDC1-204ENST00000489862 ZC3H7BQ9UGR2 993 aaKnown RBP5.64□□□□□ -1.51
DEPDC1-204ENST00000489862 CYP27A1Q02318 531 aa5.63□□□□□ -1.51
DEPDC1-204ENST00000489862 C16orf46Q6P387 395 aa5.63□□□□□ -1.51
DEPDC1-204ENST00000489862 TBC1D32Q96NH3 1257 aa5.63□□□□□ -1.51
DEPDC1-204ENST00000489862 RUSC1Q9BVN2 902 aa5.63□□□□□ -1.51
DEPDC1-204ENST00000489862 FAM177BA6PVY3 158 aa5.63□□□□□ -1.51
DEPDC1-204ENST00000489862 NPM2Q86SE8 214 aaKnown RBP5.63□□□□□ -1.51
DEPDC1-204ENST00000489862 MISP3Q96FF7 219 aa5.63□□□□□ -1.51
DEPDC1-204ENST00000489862 KCNMB2Q9Y691 235 aa5.63□□□□□ -1.51
DEPDC1-204ENST00000489862 TNFRSF10BO14763 440 aa5.62□□□□□ -1.51
DEPDC1-204ENST00000489862 XYLBO75191 536 aa5.62□□□□□ -1.51
DEPDC1-204ENST00000489862 IGHA2P01877 340 aa5.62□□□□□ -1.51
DEPDC1-204ENST00000489862 BRD2P25440 801 aaKnown RBP5.62□□□□□ -1.51
DEPDC1-204ENST00000489862 TXNDC11Q6PKC3 985 aa5.62□□□□□ -1.51
DEPDC1-204ENST00000489862 ZAR1Q86SH2 424 aa5.62□□□□□ -1.51
DEPDC1-204ENST00000489862 FOXD4L4Q8WXT5 416 aaPredicted RBP5.62□□□□□ -1.51
DEPDC1-204ENST00000489862 CLP1Q92989 425 aaKnown RBP5.62□□□□□ -1.51
DEPDC1-204ENST00000489862 CARD10Q9BWT7 1032 aa5.62□□□□□ -1.51
DEPDC1-204ENST00000489862 SEC31BQ9NQW1 1179 aa5.62□□□□□ -1.51
DEPDC1-204ENST00000489862 NFIBO00712 420 aa5.61□□□□□ -1.51
DEPDC1-204ENST00000489862 EGFRP00533 1210 aa5.61□□□□□ -1.51
DEPDC1-204ENST00000489862 HOXD8P13378 290 aaPredicted RBP5.61□□□□□ -1.51
DEPDC1-204ENST00000489862 SOX18P35713 384 aa5.61□□□□□ -1.51
DEPDC1-204ENST00000489862 NSUN5Q96P11 429 aaKnown RBP5.61□□□□□ -1.51
DEPDC1-204ENST00000489862 YIPF2Q9BWQ6 316 aa5.61□□□□□ -1.51
DEPDC1-204ENST00000489862 TMPRSS5Q9H3S3 457 aa5.61□□□□□ -1.51
DEPDC1-204ENST00000489862 LRRC4CQ9HCJ2 640 aa5.61□□□□□ -1.51
DEPDC1-204ENST00000489862 HOXA5P20719 270 aa5.6□□□□□ -1.51
DEPDC1-204ENST00000489862 FUT4P22083 530 aa5.6□□□□□ -1.51
DEPDC1-204ENST00000489862 ZNF574Q6ZN55 896 aaPredicted RBP5.6□□□□□ -1.51
DEPDC1-204ENST00000489862 SYDE1Q6ZW31 735 aaPredicted RBP5.6□□□□□ -1.51
DEPDC1-204ENST00000489862 CCDC82Q8N4S0 544 aa5.6□□□□□ -1.51
DEPDC1-204ENST00000489862 DDX3YO15523 660 aaKnown RBP5.59□□□□□ -1.51
DEPDC1-204ENST00000489862 SMNDC1O75940 238 aaKnown RBP eCLIP5.59□□□□□ -1.51
DEPDC1-204ENST00000489862 PI4K2BQ8TCG2 481 aa5.59□□□□□ -1.51
DEPDC1-204ENST00000489862 C1orf115Q9H7X2 142 aa5.59□□□□□ -1.51
DEPDC1-204ENST00000489862 SEPT3Q9UH03 358 aa5.59□□□□□ -1.51
DEPDC1-204ENST00000489862 MEGF11A6BM72 1044 aa5.59□□□□□ -1.52
DEPDC1-204ENST00000489862 TM4SF5O14894 197 aa5.59□□□□□ -1.52
DEPDC1-204ENST00000489862 ZBTB39O15060 712 aa5.59□□□□□ -1.52
DEPDC1-204ENST00000489862 MMP20O60882 483 aa5.59□□□□□ -1.52
DEPDC1-204ENST00000489862 RNASE1P07998 156 aaKnown RBP5.59□□□□□ -1.52
DEPDC1-204ENST00000489862 ATP2B4P23634 1241 aa5.59□□□□□ -1.52
DEPDC1-204ENST00000489862 SCNN1AP37088 669 aa5.59□□□□□ -1.52
DEPDC1-204ENST00000489862 USP11P51784 963 aa5.59□□□□□ -1.52
DEPDC1-204ENST00000489862 TRIP4Q15650 581 aaPredicted RBP5.59□□□□□ -1.52
DEPDC1-204ENST00000489862 ZSWIM9Q86XI8 627 aa5.59□□□□□ -1.52
DEPDC1-204ENST00000489862 LACRTQ9GZZ8 138 aa5.59□□□□□ -1.52
DEPDC1-204ENST00000489862 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.59□□□□□ -1.52
DEPDC1-204ENST00000489862 ADAM11O75078 769 aa5.58□□□□□ -1.52
DEPDC1-204ENST00000489862 CDC25BP30305 580 aa5.58□□□□□ -1.52
DEPDC1-204ENST00000489862 SHISA5Q8N114 240 aa5.58□□□□□ -1.52
DEPDC1-204ENST00000489862 STIM2Q9P246 746 aa5.58□□□□□ -1.52
DEPDC1-204ENST00000489862 PRKAG2Q9UGJ0 569 aa5.58□□□□□ -1.52
DEPDC1-204ENST00000489862 ZAP70P43403 619 aa5.57□□□□□ -1.52
DEPDC1-204ENST00000489862 KCNMB1Q16558 191 aa5.57□□□□□ -1.52
DEPDC1-204ENST00000489862 SPRED2Q7Z698 418 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 113.9 ms