RNA–Protein interactions for RNA: ENST00000489261.1

ITSN1-231, Transcript of intersectin 1, human

TSL 1 (best)

Gene ITSN1, Length 1,108 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ITSN1-231	ENST00000489261	CCDC129	Q6ZRS4	1044 aa		12.88	□□□□□ -0.35
ITSN1-231	ENST00000489261	NOL8	Q76FK4	1167 aa	Known RBP	12.88	□□□□□ -0.35
ITSN1-231	ENST00000489261	DHX32	Q7L7V1	743 aa	Known RBP	12.88	□□□□□ -0.35
ITSN1-231	ENST00000489261	FBXL16	Q8N461	479 aa		12.88	□□□□□ -0.35
ITSN1-231	ENST00000489261	NLRP3	Q96P20	1036 aa		12.88	□□□□□ -0.35
ITSN1-231	ENST00000489261	GNL3L	Q9NVN8	582 aa	Known RBP	12.88	□□□□□ -0.35
ITSN1-231	ENST00000489261	SCN7A	Q01118	1682 aa		12.88	□□□□□ -0.35
ITSN1-231	ENST00000489261	BCOR	Q6W2J9	1755 aa		12.88	□□□□□ -0.35
ITSN1-231	ENST00000489261	MAST3	O60307	1309 aa		12.88	□□□□□ -0.35
ITSN1-231	ENST00000489261	FAM177B	A6PVY3	158 aa		12.87	□□□□□ -0.35
ITSN1-231	ENST00000489261	CYP21A2	P08686	494 aa		12.87	□□□□□ -0.35
ITSN1-231	ENST00000489261	GYS1	P13807	737 aa		12.87	□□□□□ -0.35
ITSN1-231	ENST00000489261	MAP3K12	Q12852	859 aa		12.87	□□□□□ -0.35
ITSN1-231	ENST00000489261	IMMT	Q16891	758 aa	Known RBP	12.87	□□□□□ -0.35
ITSN1-231	ENST00000489261	KLHL40	Q2TBA0	621 aa		12.87	□□□□□ -0.35
ITSN1-231	ENST00000489261	ERFE	Q4G0M1	354 aa		12.87	□□□□□ -0.35
ITSN1-231	ENST00000489261	KLHL34	Q8N239	644 aa		12.87	□□□□□ -0.35
ITSN1-231	ENST00000489261	OSBP2	Q969R2	916 aa		12.87	□□□□□ -0.35
ITSN1-231	ENST00000489261	BCL2L12	Q9HB09	334 aa		12.87	□□□□□ -0.35
ITSN1-231	ENST00000489261	SEC31B	Q9NQW1	1179 aa		12.87	□□□□□ -0.35
ITSN1-231	ENST00000489261	CD2AP	Q9Y5K6	639 aa		12.87	□□□□□ -0.35
ITSN1-231	ENST00000489261	NRXN2	Q9P2S2	1712 aa		12.87	□□□□□ -0.35
ITSN1-231	ENST00000489261	LAMB2	P55268	1798 aa		12.86	□□□□□ -0.35
ITSN1-231	ENST00000489261	CHRND	Q07001	517 aa		12.86	□□□□□ -0.35
ITSN1-231	ENST00000489261	SCARF1	Q14162	830 aa		12.86	□□□□□ -0.35
ITSN1-231	ENST00000489261	ALX1	Q15699	326 aa		12.86	□□□□□ -0.35
ITSN1-231	ENST00000489261	ME3	Q16798	604 aa		12.86	□□□□□ -0.35
ITSN1-231	ENST00000489261	TBC1D9B	Q66K14	1250 aa		12.86	□□□□□ -0.35
ITSN1-231	ENST00000489261	MCTP1	Q6DN14	999 aa		12.86	□□□□□ -0.35
ITSN1-231	ENST00000489261	TMED8	Q6PL24	325 aa	Predicted RBP	12.86	□□□□□ -0.35
ITSN1-231	ENST00000489261	SPATA5	Q8NB90	893 aa		12.86	□□□□□ -0.35
ITSN1-231	ENST00000489261	ANKRD2	Q9GZV1	360 aa		12.86	□□□□□ -0.35
ITSN1-231	ENST00000489261	UTRN	P46939	3433 aa		12.85	□□□□□ -0.35
ITSN1-231	ENST00000489261		M0R2C6	588 aa		12.85	□□□□□ -0.35
ITSN1-231	ENST00000489261	STX6	O43752	255 aa		12.85	□□□□□ -0.35
ITSN1-231	ENST00000489261	MMP10	P09238	476 aa		12.85	□□□□□ -0.35
ITSN1-231	ENST00000489261	CPA1	P15085	419 aa		12.85	□□□□□ -0.35
ITSN1-231	ENST00000489261	RFC4	P35249	363 aa		12.85	□□□□□ -0.35
ITSN1-231	ENST00000489261	PHKA1	P46020	1223 aa		12.85	□□□□□ -0.35
ITSN1-231	ENST00000489261	EXOSC10	Q01780	885 aa	Known RBP	12.85	□□□□□ -0.35
ITSN1-231	ENST00000489261	CSPP1	Q1MSJ5	1256 aa		12.85	□□□□□ -0.35
ITSN1-231	ENST00000489261	SLC9C2	Q5TAH2	1124 aa		12.85	□□□□□ -0.35
ITSN1-231	ENST00000489261	NBPF5P	Q86XG9	351 aa	Predicted RBP	12.85	□□□□□ -0.35
ITSN1-231	ENST00000489261	NLGN1	Q8N2Q7	840 aa		12.85	□□□□□ -0.35
ITSN1-231	ENST00000489261	LLPH	Q9BRT6	129 aa	Known RBP	12.85	□□□□□ -0.35
ITSN1-231	ENST00000489261	AGXT2	Q9BYV1	514 aa		12.85	□□□□□ -0.35
ITSN1-231	ENST00000489261	LMBRD1	Q9NUN5	540 aa		12.85	□□□□□ -0.35
ITSN1-231	ENST00000489261	TPCN1	Q9ULQ1	816 aa		12.85	□□□□□ -0.35
ITSN1-231	ENST00000489261	C10orf71	Q711Q0	1435 aa		12.85	□□□□□ -0.35
ITSN1-231	ENST00000489261	WDR19	Q8NEZ3	1342 aa		12.85	□□□□□ -0.35
ITSN1-231	ENST00000489261	SEMA3E	O15041	775 aa		12.84	□□□□□ -0.35
ITSN1-231	ENST00000489261	MBD3	O95983	291 aa		12.84	□□□□□ -0.35
ITSN1-231	ENST00000489261	ZSCAN22	P10073	491 aa	Predicted RBP	12.84	□□□□□ -0.35
ITSN1-231	ENST00000489261	GNAT2	P19087	354 aa		12.84	□□□□□ -0.35
ITSN1-231	ENST00000489261	RPS8	P62241	208 aa	Known RBP	12.84	□□□□□ -0.35
ITSN1-231	ENST00000489261	PKP1	Q13835	747 aa		12.84	□□□□□ -0.35
ITSN1-231	ENST00000489261	TOB2	Q14106	344 aa	Predicted RBP	12.84	□□□□□ -0.35
ITSN1-231	ENST00000489261	CAVIN4	Q5BKX8	364 aa		12.84	□□□□□ -0.35
ITSN1-231	ENST00000489261	CCDC83	Q8IWF9	413 aa		12.84	□□□□□ -0.35
ITSN1-231	ENST00000489261	DDX49	Q9Y6V7	483 aa	Known RBP	12.84	□□□□□ -0.35
ITSN1-231	ENST00000489261	DDX60	Q8IY21	1712 aa	Known RBP	12.84	□□□□□ -0.35
ITSN1-231	ENST00000489261	ZMYM6	O95789	1325 aa		12.84	□□□□□ -0.35
ITSN1-231	ENST00000489261	ARFGEF1	Q9Y6D6	1849 aa		12.83	□□□□□ -0.35
ITSN1-231	ENST00000489261		E7EWF7	191 aa		12.83	□□□□□ -0.36
ITSN1-231	ENST00000489261	ZNF213	O14771	459 aa		12.83	□□□□□ -0.36
ITSN1-231	ENST00000489261	GPAA1	O43292	621 aa		12.83	□□□□□ -0.36
ITSN1-231	ENST00000489261	PDE6A	P16499	860 aa		12.83	□□□□□ -0.36
ITSN1-231	ENST00000489261	NCL	P19338	710 aa	Known RBP	12.83	□□□□□ -0.36
ITSN1-231	ENST00000489261	SYT1	P21579	422 aa		12.83	□□□□□ -0.36
ITSN1-231	ENST00000489261	YY1	P25490	414 aa		12.83	□□□□□ -0.36
ITSN1-231	ENST00000489261	GJB2	P29033	226 aa		12.83	□□□□□ -0.36
ITSN1-231	ENST00000489261	FGD1	P98174	961 aa		12.83	□□□□□ -0.36
ITSN1-231	ENST00000489261		Q6ZUG5	572 aa		12.83	□□□□□ -0.36
ITSN1-231	ENST00000489261	HELB	Q8NG08	1087 aa	Predicted RBP	12.83	□□□□□ -0.36
ITSN1-231	ENST00000489261	ZNF274	Q96GC6	653 aa	Predicted RBP	12.83	□□□□□ -0.36
ITSN1-231	ENST00000489261	PIH1D3	Q9NQM4	214 aa	Known RBP	12.83	□□□□□ -0.36
ITSN1-231	ENST00000489261	KIF3A	Q9Y496	699 aa		12.83	□□□□□ -0.36
ITSN1-231	ENST00000489261	DLEC1	Q9Y238	1755 aa		12.83	□□□□□ -0.36
ITSN1-231	ENST00000489261	GOLGB1	Q14789	3259 aa	Known RBP	12.82	□□□□□ -0.36
ITSN1-231	ENST00000489261	ARAP2	Q8WZ64	1704 aa		12.82	□□□□□ -0.36
ITSN1-231	ENST00000489261	GOLGA6L3	A6NEY3	463 aa		12.82	□□□□□ -0.36
ITSN1-231	ENST00000489261	PATL2	C9JE40	543 aa	Known RBP	12.82	□□□□□ -0.36
ITSN1-231	ENST00000489261	IDH1	O75874	414 aa	Known RBP	12.82	□□□□□ -0.36
ITSN1-231	ENST00000489261	FGA	P02671	866 aa		12.82	□□□□□ -0.36
ITSN1-231	ENST00000489261	EVC	P57679	992 aa		12.82	□□□□□ -0.36
ITSN1-231	ENST00000489261	GPR162	Q16538	588 aa		12.82	□□□□□ -0.36
ITSN1-231	ENST00000489261	BICDL1	Q6ZP65	573 aa		12.82	□□□□□ -0.36
ITSN1-231	ENST00000489261	PUS7L	Q9H0K6	701 aa	Known RBP	12.82	□□□□□ -0.36
ITSN1-231	ENST00000489261	SRP68	Q9UHB9	627 aa	Known RBP	12.82	□□□□□ -0.36
ITSN1-231	ENST00000489261	DENND2A	Q9ULE3	1009 aa		12.82	□□□□□ -0.36
ITSN1-231	ENST00000489261	MINPP1	Q9UNW1	487 aa		12.82	□□□□□ -0.36
ITSN1-231	ENST00000489261	ZNF804B	A4D1E1	1349 aa		12.82	□□□□□ -0.36
ITSN1-231	ENST00000489261	PDS5A	Q29RF7	1337 aa	Known RBP	12.82	□□□□□ -0.36
ITSN1-231	ENST00000489261	TCRBV5S4A2T	A0A5A2	114 aa		12.81	□□□□□ -0.36
ITSN1-231	ENST00000489261	PFKFB2	O60825	505 aa		12.81	□□□□□ -0.36
ITSN1-231	ENST00000489261	PRPF40A	O75400	957 aa	Known RBP	12.81	□□□□□ -0.36
ITSN1-231	ENST00000489261	LARGE1	O95461	756 aa		12.81	□□□□□ -0.36
ITSN1-231	ENST00000489261	F13A1	P00488	732 aa		12.81	□□□□□ -0.36
ITSN1-231	ENST00000489261	CHGB	P05060	677 aa		12.81	□□□□□ -0.36
ITSN1-231	ENST00000489261	YBX3	P16989	372 aa	Known RBP eCLIP	12.81	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms