RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 SIRT1Q96EB6 747 aa12.29□□□□□ -0.44
CCDC171-208ENST00000486641 EIF3CQ99613 913 aaKnown RBP12.29□□□□□ -0.44
CCDC171-208ENST00000486641 BRMS1Q9HCU9 246 aa12.29□□□□□ -0.44
CCDC171-208ENST00000486641 TOMM22Q9NS69 142 aa12.29□□□□□ -0.44
CCDC171-208ENST00000486641 RTEL1Q9NZ71 1219 aa12.29□□□□□ -0.44
CCDC171-208ENST00000486641 CLIC4Q9Y696 253 aa12.29□□□□□ -0.44
CCDC171-208ENST00000486641 ACEP12821 1306 aa12.29□□□□□ -0.44
CCDC171-208ENST00000486641 IGSF1Q8N6C5 1336 aa12.29□□□□□ -0.44
CCDC171-208ENST00000486641 IKBKBO14920 756 aa12.29□□□□□ -0.44
CCDC171-208ENST00000486641 ARHGAP6O43182 974 aa12.29□□□□□ -0.44
CCDC171-208ENST00000486641 RPS6KA5O75582 802 aa12.29□□□□□ -0.44
CCDC171-208ENST00000486641 ZNF202O95125 648 aa12.29□□□□□ -0.44
CCDC171-208ENST00000486641 CYP21A2P08686 494 aa12.29□□□□□ -0.44
CCDC171-208ENST00000486641 BRD3Q15059 726 aa12.29□□□□□ -0.44
CCDC171-208ENST00000486641 CFAP100Q494V2 611 aa12.29□□□□□ -0.44
CCDC171-208ENST00000486641 VSTM4Q8IW00 320 aa12.29□□□□□ -0.44
CCDC171-208ENST00000486641 LINC00301Q8NCQ3 95 aa12.29□□□□□ -0.44
CCDC171-208ENST00000486641 ZSWIM4Q9H7M6 989 aa12.29□□□□□ -0.44
CCDC171-208ENST00000486641 ABCC6O95255 1503 aa12.29□□□□□ -0.44
CCDC171-208ENST00000486641 TOP1P11387 765 aaKnown RBP12.28□□□□□ -0.44
CCDC171-208ENST00000486641 BEND6Q5SZJ8 279 aaPredicted RBP12.28□□□□□ -0.44
CCDC171-208ENST00000486641 DRC1Q96MC2 740 aa12.28□□□□□ -0.44
CCDC171-208ENST00000486641 NCOA5Q9HCD5 579 aaKnown RBP12.28□□□□□ -0.44
CCDC171-208ENST00000486641 C9orf78Q9NZ63 289 aaPredicted RBP12.28□□□□□ -0.44
CCDC171-208ENST00000486641 METP08581 1390 aa12.28□□□□□ -0.44
CCDC171-208ENST00000486641 USP31Q70CQ4 1352 aa12.28□□□□□ -0.44
CCDC171-208ENST00000486641 ANKRD65E5RJM6 399 aa12.28□□□□□ -0.44
CCDC171-208ENST00000486641 CBFA2T2O43439 604 aa12.28□□□□□ -0.44
CCDC171-208ENST00000486641 CHGBP05060 677 aa12.28□□□□□ -0.44
CCDC171-208ENST00000486641 SF3A1Q15459 793 aaKnown RBP12.28□□□□□ -0.44
CCDC171-208ENST00000486641 CCDC129Q6ZRS4 1044 aa12.28□□□□□ -0.44
CCDC171-208ENST00000486641 TOGARAM2Q6ZUX3 1019 aa12.28□□□□□ -0.44
CCDC171-208ENST00000486641 BABAM1Q9NWV8 329 aa12.28□□□□□ -0.44
CCDC171-208ENST00000486641 FAN1Q9Y2M0 1017 aa12.28□□□□□ -0.44
CCDC171-208ENST00000486641 G3BP1Q13283 466 aaKnown RBP eCLIP12.27□□□□□ -0.44
CCDC171-208ENST00000486641 STK38Q15208 465 aa12.27□□□□□ -0.44
CCDC171-208ENST00000486641 STOX1Q6ZVD7 989 aa12.27□□□□□ -0.44
CCDC171-208ENST00000486641 HDXQ7Z353 690 aa12.27□□□□□ -0.44
CCDC171-208ENST00000486641 HNRNPLLQ8WVV9 542 aaKnown RBP12.27□□□□□ -0.44
CCDC171-208ENST00000486641 ANKZF1Q9H8Y5 726 aa12.27□□□□□ -0.44
CCDC171-208ENST00000486641 DIP2CQ9Y2E4 1556 aa12.27□□□□□ -0.45
CCDC171-208ENST00000486641 LRRC31Q6UY01 552 aa12.27□□□□□ -0.45
CCDC171-208ENST00000486641 BAG1Q99933 345 aaPredicted RBP12.27□□□□□ -0.45
CCDC171-208ENST00000486641 SUGCTQ9HAC7 445 aa12.27□□□□□ -0.45
CCDC171-208ENST00000486641 SALL1Q9NSC2 1324 aa12.26□□□□□ -0.45
CCDC171-208ENST00000486641 GOLGA6L9A6NEM1 432 aa12.26□□□□□ -0.45
CCDC171-208ENST00000486641 POLR3DP05423 398 aaPredicted RBP12.26□□□□□ -0.45
CCDC171-208ENST00000486641 CORO7P57737 925 aa12.26□□□□□ -0.45
CCDC171-208ENST00000486641 WWC2Q6AWC2 1192 aa12.26□□□□□ -0.45
CCDC171-208ENST00000486641 OTUD7BQ6GQQ9 843 aa12.26□□□□□ -0.45
CCDC171-208ENST00000486641 SECISBP2LQ93073 1101 aaKnown RBP12.26□□□□□ -0.45
CCDC171-208ENST00000486641 NCAPGQ9BPX3 1015 aa12.26□□□□□ -0.45
CCDC171-208ENST00000486641 AKAP2Q9Y2D5 859 aa12.26□□□□□ -0.45
CCDC171-208ENST00000486641 U3KPZ7 1027 aaPredicted RBP12.26□□□□□ -0.45
CCDC171-208ENST00000486641 NALCNQ8IZF0 1738 aa12.26□□□□□ -0.45
CCDC171-208ENST00000486641 FMN2Q9NZ56 1722 aa12.26□□□□□ -0.45
CCDC171-208ENST00000486641 ATP2B1P20020 1258 aa12.26□□□□□ -0.45
CCDC171-208ENST00000486641 AMPHP49418 695 aa12.26□□□□□ -0.45
CCDC171-208ENST00000486641 CHMP4BP1P59074 171 aa12.26□□□□□ -0.45
CCDC171-208ENST00000486641 SART3Q15020 963 aaKnown RBP12.26□□□□□ -0.45
CCDC171-208ENST00000486641 DHX32Q7L7V1 743 aaKnown RBP12.26□□□□□ -0.45
CCDC171-208ENST00000486641 CCDC12Q8WUD4 166 aaPredicted RBP12.26□□□□□ -0.45
CCDC171-208ENST00000486641 PNKPQ96T60 521 aa12.26□□□□□ -0.45
CCDC171-208ENST00000486641 MYCBPQ99417 103 aaPredicted RBP12.26□□□□□ -0.45
CCDC171-208ENST00000486641 IRX2Q9BZI1 471 aaPredicted RBP12.26□□□□□ -0.45
CCDC171-208ENST00000486641 ABCB6Q9NP58 842 aa12.26□□□□□ -0.45
CCDC171-208ENST00000486641 INTS13Q9NVM9 706 aa12.26□□□□□ -0.45
CCDC171-208ENST00000486641 PUF60Q9UHX1 559 aaKnown RBP12.26□□□□□ -0.45
CCDC171-208ENST00000486641 L1RE1Q9UN81 338 aa12.26□□□□□ -0.45
CCDC171-208ENST00000486641 SPTLC2O15270 562 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 FDPSP14324 419 aaKnown RBP12.25□□□□□ -0.45
CCDC171-208ENST00000486641 USP5P45974 858 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 EIF4A1P60842 406 aaKnown RBP12.25□□□□□ -0.45
CCDC171-208ENST00000486641 MYL5Q02045 173 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 TBX2Q13207 712 aaPredicted RBP12.25□□□□□ -0.45
CCDC171-208ENST00000486641 KARSQ15046 597 aaKnown RBP12.25□□□□□ -0.45
CCDC171-208ENST00000486641 CWF19L2Q2TBE0 894 aaKnown RBP12.25□□□□□ -0.45
CCDC171-208ENST00000486641 SRGAP1Q7Z6B7 1085 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 PDILTQ8N807 584 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 PPM1EQ8WY54 764 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 FANCLQ9NW38 375 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 MKRN1Q9UHC7 482 aaKnown RBP12.25□□□□□ -0.45
CCDC171-208ENST00000486641 NDUFB9Q9Y6M9 179 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 SBNO1A3KN83 1393 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 FLT4P35916 1363 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 AGLP35573 1532 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 STX10O60499 249 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 CUTAO60888 179 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 PFKFB1P16118 471 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 MMP14P50281 582 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 ADKP55263 362 aaKnown RBP12.25□□□□□ -0.45
CCDC171-208ENST00000486641 KCNG4Q8TDN1 519 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 KAZALD1Q96I82 304 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 DESI2Q9BSY9 194 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 PLEKHA4Q9H4M7 779 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 RAB21Q9UL25 225 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 MAP3K2Q9Y2U5 619 aa12.25□□□□□ -0.45
CCDC171-208ENST00000486641 LAMA4Q16363 1823 aa12.24□□□□□ -0.45
CCDC171-208ENST00000486641 EXOSC10Q01780 885 aaKnown RBP12.24□□□□□ -0.45
CCDC171-208ENST00000486641 TC2NQ8N9U0 490 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms