RNA–Protein interactions for RNA: ENST00000484084.5

RTFDC1-208, Transcript of Protein RTF2 homolog, human

TSL 5

Gene RTFDC1, Length 657 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTFDC1-208	ENST00000484084	CD209	Q9NNX6	404 aa		11.15	□□□□□ -0.62
RTFDC1-208	ENST00000484084	RANBP2	P49792	3224 aa	Known RBP	11.15	□□□□□ -0.62
RTFDC1-208	ENST00000484084	ZSWIM8	A7E2V4	1837 aa		11.14	□□□□□ -0.63
RTFDC1-208	ENST00000484084	APAF1	O14727	1248 aa		11.14	□□□□□ -0.63
RTFDC1-208	ENST00000484084	INTS3	Q68E01	1043 aa	Known RBP	11.14	□□□□□ -0.63
RTFDC1-208	ENST00000484084	C15orf52	Q6ZUT6	534 aa	Known RBP	11.14	□□□□□ -0.63
RTFDC1-208	ENST00000484084	CD99L2	Q8TCZ2	262 aa		11.14	□□□□□ -0.63
RTFDC1-208	ENST00000484084	FBXW7	Q969H0	707 aa		11.14	□□□□□ -0.63
RTFDC1-208	ENST00000484084	MS4A4A	Q96JQ5	239 aa		11.14	□□□□□ -0.63
RTFDC1-208	ENST00000484084	SPDYE2B	A6NHP3	402 aa		11.13	□□□□□ -0.63
RTFDC1-208	ENST00000484084	SPDYE6	P0CI01	402 aa		11.13	□□□□□ -0.63
RTFDC1-208	ENST00000484084	ITGA6	P23229	1130 aa		11.13	□□□□□ -0.63
RTFDC1-208	ENST00000484084	GNAI1	P63096	354 aa		11.13	□□□□□ -0.63
RTFDC1-208	ENST00000484084	CHRND	Q07001	517 aa		11.13	□□□□□ -0.63
RTFDC1-208	ENST00000484084	UBE3B	Q7Z3V4	1068 aa		11.13	□□□□□ -0.63
RTFDC1-208	ENST00000484084	SLC10A4	Q96EP9	437 aa		11.13	□□□□□ -0.63
RTFDC1-208	ENST00000484084	TEPSIN	Q96N21	525 aa		11.13	□□□□□ -0.63
RTFDC1-208	ENST00000484084	CLRN2	A0PK11	232 aa		11.12	□□□□□ -0.63
RTFDC1-208	ENST00000484084	UNCX	A6NJT0	531 aa		11.12	□□□□□ -0.63
RTFDC1-208	ENST00000484084	TAF5L	O75529	589 aa		11.12	□□□□□ -0.63
RTFDC1-208	ENST00000484084	IL1R1	P14778	569 aa		11.12	□□□□□ -0.63
RTFDC1-208	ENST00000484084	GCKR	Q14397	625 aa		11.12	□□□□□ -0.63
RTFDC1-208	ENST00000484084	CCDC30	Q5VVM6	783 aa		11.12	□□□□□ -0.63
RTFDC1-208	ENST00000484084	CNKSR2	Q8WXI2	1034 aa		11.12	□□□□□ -0.63
RTFDC1-208	ENST00000484084	ZNF333	Q96JL9	665 aa		11.12	□□□□□ -0.63
RTFDC1-208	ENST00000484084	COLQ	Q9Y215	455 aa	Predicted RBP	11.12	□□□□□ -0.63
RTFDC1-208	ENST00000484084	PPP2R3B	Q9Y5P8	575 aa		11.12	□□□□□ -0.63
RTFDC1-208	ENST00000484084	DDX58	O95786	925 aa	Known RBP	11.11	□□□□□ -0.63
RTFDC1-208	ENST00000484084	FOXO4	P98177	505 aa		11.11	□□□□□ -0.63
RTFDC1-208	ENST00000484084	DLGAP5	Q15398	846 aa		11.11	□□□□□ -0.63
RTFDC1-208	ENST00000484084	CFAP100	Q494V2	611 aa		11.11	□□□□□ -0.63
RTFDC1-208	ENST00000484084	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	11.11	□□□□□ -0.63
RTFDC1-208	ENST00000484084	TSR2	Q969E8	191 aa	Known RBP	11.11	□□□□□ -0.63
RTFDC1-208	ENST00000484084	OTUD5	Q96G74	571 aa		11.11	□□□□□ -0.63
RTFDC1-208	ENST00000484084	ANKRD2	Q9GZV1	360 aa		11.11	□□□□□ -0.63
RTFDC1-208	ENST00000484084	KIAA0100	Q14667	2235 aa	Known RBP	11.11	□□□□□ -0.63
RTFDC1-208	ENST00000484084	IGHMBP2	P38935	993 aa	Known RBP	11.1	□□□□□ -0.63
RTFDC1-208	ENST00000484084	FKBP1A	P62942	108 aa	Known RBP	11.1	□□□□□ -0.63
RTFDC1-208	ENST00000484084	SP3	Q02447	781 aa		11.1	□□□□□ -0.63
RTFDC1-208	ENST00000484084	RASA3	Q14644	834 aa		11.1	□□□□□ -0.63
RTFDC1-208	ENST00000484084	WDR43	Q15061	677 aa	Known RBP eCLIP	11.1	□□□□□ -0.63
RTFDC1-208	ENST00000484084	HELB	Q8NG08	1087 aa	Predicted RBP	11.1	□□□□□ -0.63
RTFDC1-208	ENST00000484084	BRI3BP	Q8WY22	251 aa		11.1	□□□□□ -0.63
RTFDC1-208	ENST00000484084	ERO1A	Q96HE7	468 aa		11.1	□□□□□ -0.63
RTFDC1-208	ENST00000484084	JAG2	Q9Y219	1238 aa		11.1	□□□□□ -0.63
RTFDC1-208	ENST00000484084	ARAP2	Q8WZ64	1704 aa		11.09	□□□□□ -0.63
RTFDC1-208	ENST00000484084		F8W031	263 aa	Predicted RBP	11.09	□□□□□ -0.63
RTFDC1-208	ENST00000484084	PPP1R12B	O60237	982 aa	Predicted RBP	11.09	□□□□□ -0.63
RTFDC1-208	ENST00000484084	DDX10	Q13206	875 aa	Known RBP	11.09	□□□□□ -0.63
RTFDC1-208	ENST00000484084	EPHA10	Q5JZY3	1008 aa		11.09	□□□□□ -0.63
RTFDC1-208	ENST00000484084	FAM43A	Q8N2R8	423 aa		11.09	□□□□□ -0.63
RTFDC1-208	ENST00000484084	OPTN	Q96CV9	577 aa		11.09	□□□□□ -0.63
RTFDC1-208	ENST00000484084	EFCC1	Q9HA90	598 aa		11.09	□□□□□ -0.63
RTFDC1-208	ENST00000484084	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.09	□□□□□ -0.63
RTFDC1-208	ENST00000484084	PTCH2	Q9Y6C5	1203 aa		11.09	□□□□□ -0.63
RTFDC1-208	ENST00000484084	CTGF	P29279	349 aa		11.08	□□□□□ -0.64
RTFDC1-208	ENST00000484084	GRIK5	Q16478	980 aa		11.08	□□□□□ -0.64
RTFDC1-208	ENST00000484084	SUPT20HL1	Q3ZLR7	823 aa		11.08	□□□□□ -0.64
RTFDC1-208	ENST00000484084	SPDYE2	Q495Y8	402 aa		11.08	□□□□□ -0.64
RTFDC1-208	ENST00000484084	ANKRD13A	Q8IZ07	590 aa		11.08	□□□□□ -0.64
RTFDC1-208	ENST00000484084	ARHGAP39	Q9C0H5	1083 aa		11.08	□□□□□ -0.64
RTFDC1-208	ENST00000484084	ELP3	Q9H9T3	547 aa		11.08	□□□□□ -0.64
RTFDC1-208	ENST00000484084	FAM205A	Q6ZU69	1335 aa		11.08	□□□□□ -0.64
RTFDC1-208	ENST00000484084	LAMA3	Q16787	3333 aa		11.07	□□□□□ -0.64
RTFDC1-208	ENST00000484084		H0YGN5	161 aa		11.07	□□□□□ -0.64
RTFDC1-208	ENST00000484084	SLC4A2	P04920	1241 aa		11.07	□□□□□ -0.64
RTFDC1-208	ENST00000484084	VGLL4	Q14135	290 aa		11.07	□□□□□ -0.64
RTFDC1-208	ENST00000484084	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	11.07	□□□□□ -0.64
RTFDC1-208	ENST00000484084	MPHOSPH8	Q99549	860 aa		11.07	□□□□□ -0.64
RTFDC1-208	ENST00000484084	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.07	□□□□□ -0.64
RTFDC1-208	ENST00000484084	ZNF70	Q9UC06	446 aa	Predicted RBP	11.07	□□□□□ -0.64
RTFDC1-208	ENST00000484084	IREB2	P48200	963 aa	Known RBP	11.06	□□□□□ -0.64
RTFDC1-208	ENST00000484084	CALD1	Q05682	793 aa	Known RBP	11.06	□□□□□ -0.64
RTFDC1-208	ENST00000484084	NEXN	Q0ZGT2	675 aa		11.06	□□□□□ -0.64
RTFDC1-208	ENST00000484084	UBE2Q1	Q7Z7E8	422 aa		11.06	□□□□□ -0.64
RTFDC1-208	ENST00000484084	LINS1	Q8NG48	757 aa		11.06	□□□□□ -0.64
RTFDC1-208	ENST00000484084	TDRD7	Q8NHU6	1098 aa	Known RBP	11.06	□□□□□ -0.64
RTFDC1-208	ENST00000484084	SHISA4	Q96DD7	197 aa		11.06	□□□□□ -0.64
RTFDC1-208	ENST00000484084	ZNF594	Q96JF6	807 aa	Predicted RBP	11.06	□□□□□ -0.64
RTFDC1-208	ENST00000484084	TMEM39B	Q9GZU3	492 aa		11.06	□□□□□ -0.64
RTFDC1-208	ENST00000484084	PRO3102	Q9H379	93 aa		11.06	□□□□□ -0.64
RTFDC1-208	ENST00000484084	TDRD3	Q9H7E2	651 aa	Known RBP	11.06	□□□□□ -0.64
RTFDC1-208	ENST00000484084	VEZT	Q9HBM0	779 aa		11.06	□□□□□ -0.64
RTFDC1-208	ENST00000484084	COL6A3	P12111	3177 aa		11.06	□□□□□ -0.64
RTFDC1-208	ENST00000484084	ANKRD18B	A2A2Z9	1011 aa		11.05	□□□□□ -0.64
RTFDC1-208	ENST00000484084	FLII	Q13045	1269 aa		11.05	□□□□□ -0.64
RTFDC1-208	ENST00000484084	TWISTNB	Q3B726	338 aa	Predicted RBP	11.05	□□□□□ -0.64
RTFDC1-208	ENST00000484084	CCDC184	Q52MB2	194 aa		11.05	□□□□□ -0.64
RTFDC1-208	ENST00000484084	SH3TC2	Q8TF17	1288 aa		11.05	□□□□□ -0.64
RTFDC1-208	ENST00000484084	DNAAF4	Q8WXU2	420 aa		11.05	□□□□□ -0.64
RTFDC1-208	ENST00000484084	KAZALD1	Q96I82	304 aa		11.05	□□□□□ -0.64
RTFDC1-208	ENST00000484084	FAM84B	Q96KN1	310 aa	Predicted RBP	11.05	□□□□□ -0.64
RTFDC1-208	ENST00000484084	SERPINA10	Q9UK55	444 aa		11.05	□□□□□ -0.64
RTFDC1-208	ENST00000484084	MYO1B	O43795	1136 aa		11.04	□□□□□ -0.64
RTFDC1-208	ENST00000484084	KCNJ4	P48050	445 aa		11.04	□□□□□ -0.64
RTFDC1-208	ENST00000484084	BEND3	Q5T5X7	828 aa		11.04	□□□□□ -0.64
RTFDC1-208	ENST00000484084	OTUD7B	Q6GQQ9	843 aa		11.04	□□□□□ -0.64
RTFDC1-208	ENST00000484084	WWC1	Q8IX03	1113 aa		11.04	□□□□□ -0.64
RTFDC1-208	ENST00000484084	DZIP1L	Q8IYY4	767 aa	Known RBP	11.04	□□□□□ -0.64
RTFDC1-208	ENST00000484084	SNCAIP	Q9Y6H5	919 aa		11.04	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms