RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.93□□□□□ -0.02
SDC1-206ENST00000482879 SNRKQ9NRH2 765 aa14.93□□□□□ -0.02
SDC1-206ENST00000482879 DENND2AQ9ULE3 1009 aa14.93□□□□□ -0.02
SDC1-206ENST00000482879 CHAF1AQ13111 956 aaPredicted RBP14.92□□□□□ -0.02
SDC1-206ENST00000482879 RASGRF1Q13972 1273 aa14.92□□□□□ -0.02
SDC1-206ENST00000482879 SPATA5Q8NB90 893 aa14.92□□□□□ -0.02
SDC1-206ENST00000482879 HMG20BQ9P0W2 317 aa14.92□□□□□ -0.02
SDC1-206ENST00000482879 ZNRF3Q9ULT6 936 aa14.92□□□□□ -0.02
SDC1-206ENST00000482879 COL4A5P29400 1685 aa14.92□□□□□ -0.02
SDC1-206ENST00000482879 YDJCA8MPS7 323 aa14.91□□□□□ -0.02
SDC1-206ENST00000482879 ZBTB22O15209 634 aa14.91□□□□□ -0.02
SDC1-206ENST00000482879 ZAP70P43403 619 aa14.91□□□□□ -0.02
SDC1-206ENST00000482879 PI16Q6UXB8 463 aa14.91□□□□□ -0.02
SDC1-206ENST00000482879 FBXW7Q969H0 707 aa14.91□□□□□ -0.02
SDC1-206ENST00000482879 DNAJC2Q99543 621 aaKnown RBP14.91□□□□□ -0.02
SDC1-206ENST00000482879 HAUS7Q99871 368 aa14.91□□□□□ -0.02
SDC1-206ENST00000482879 KCNQ5Q9NR82 932 aa14.91□□□□□ -0.02
SDC1-206ENST00000482879 RNF181Q9P0P0 153 aa14.91□□□□□ -0.02
SDC1-206ENST00000482879 JAG2Q9Y219 1238 aa14.91□□□□□ -0.02
SDC1-206ENST00000482879 AK9Q5TCS8 1911 aa14.91□□□□□ -0.02
SDC1-206ENST00000482879 MYO5AQ9Y4I1 1855 aaKnown RBP14.91□□□□□ -0.02
SDC1-206ENST00000482879 PSME4Q14997 1843 aa14.9□□□□□ -0.02
SDC1-206ENST00000482879 MAP4K4O95819 1239 aaPredicted RBP14.9□□□□□ -0.02
SDC1-206ENST00000482879 GTF2IP78347 998 aa14.9□□□□□ -0.02
SDC1-206ENST00000482879 C9orf131Q5VYM1 1079 aa14.9□□□□□ -0.02
SDC1-206ENST00000482879 TTLL5Q6EMB2 1281 aa14.9□□□□□ -0.02
SDC1-206ENST00000482879 NDUFB9Q9Y6M9 179 aa14.9□□□□□ -0.02
SDC1-206ENST00000482879 FAM205AQ6ZU69 1335 aa14.9□□□□□ -0.02
SDC1-206ENST00000482879 USP17L3A6NCW0 530 aa14.89□□□□□ -0.03
SDC1-206ENST00000482879 USP17L4A6NCW7 530 aa14.89□□□□□ -0.03
SDC1-206ENST00000482879 RAD17O75943 681 aa14.89□□□□□ -0.03
SDC1-206ENST00000482879 TTC22Q5TAA0 569 aa14.89□□□□□ -0.03
SDC1-206ENST00000482879 USP17L1Q7RTZ2 530 aa14.89□□□□□ -0.03
SDC1-206ENST00000482879 WDR66Q8TBY9 1149 aa14.89□□□□□ -0.03
SDC1-206ENST00000482879 PDS5AQ29RF7 1337 aaKnown RBP14.89□□□□□ -0.03
SDC1-206ENST00000482879 COL1A1P02452 1464 aaPredicted RBP14.89□□□□□ -0.03
SDC1-206ENST00000482879 TRIM6-TRIM34B2RNG4 842 aa14.88□□□□□ -0.03
SDC1-206ENST00000482879 GOLIM4O00461 696 aa14.88□□□□□ -0.03
SDC1-206ENST00000482879 CYP2E1P05181 493 aaPredicted RBP14.88□□□□□ -0.03
SDC1-206ENST00000482879 EIF6P56537 245 aaKnown RBP14.88□□□□□ -0.03
SDC1-206ENST00000482879 STRIP1Q5VSL9 837 aa14.88□□□□□ -0.03
SDC1-206ENST00000482879 EDC3Q96F86 508 aaKnown RBP14.88□□□□□ -0.03
SDC1-206ENST00000482879 PAG1Q9NWQ8 432 aa14.88□□□□□ -0.03
SDC1-206ENST00000482879 FZD9O00144 591 aa14.87□□□□□ -0.03
SDC1-206ENST00000482879 CXCL9Q07325 125 aa14.87□□□□□ -0.03
SDC1-206ENST00000482879 TTF1Q15361 905 aaPredicted RBP14.87□□□□□ -0.03
SDC1-206ENST00000482879 CIAPIN1Q6FI81 312 aa14.87□□□□□ -0.03
SDC1-206ENST00000482879 TBC1D9Q6ZT07 1266 aa14.87□□□□□ -0.03
SDC1-206ENST00000482879 TBC1D22AQ8WUA7 517 aa14.87□□□□□ -0.03
SDC1-206ENST00000482879 ANTXR1Q9H6X2 564 aa14.87□□□□□ -0.03
SDC1-206ENST00000482879 ABCF2Q9UG63 623 aa14.87□□□□□ -0.03
SDC1-206ENST00000482879 MYH7P12883 1935 aa14.87□□□□□ -0.03
SDC1-206ENST00000482879 TIAM2Q8IVF5 1701 aa14.86□□□□□ -0.03
SDC1-206ENST00000482879 PSMD14O00487 310 aa14.86□□□□□ -0.03
SDC1-206ENST00000482879 GSPT1P15170 499 aaKnown RBP14.86□□□□□ -0.03
SDC1-206ENST00000482879 TNIP1Q15025 636 aa14.86□□□□□ -0.03
SDC1-206ENST00000482879 MFSD14BQ5SR56 506 aa14.86□□□□□ -0.03
SDC1-206ENST00000482879 DACT2Q5SW24 774 aa14.86□□□□□ -0.03
SDC1-206ENST00000482879 ZGPATQ8N5A5 531 aaKnown RBP14.86□□□□□ -0.03
SDC1-206ENST00000482879 RILPL2Q969X0 211 aa14.86□□□□□ -0.03
SDC1-206ENST00000482879 MXD3Q9BW11 206 aa14.86□□□□□ -0.03
SDC1-206ENST00000482879 PIH1D3Q9NQM4 214 aaKnown RBP14.86□□□□□ -0.03
SDC1-206ENST00000482879 ZNF646O15015 1829 aaPredicted RBP14.86□□□□□ -0.03
SDC1-206ENST00000482879 SALL1Q9NSC2 1324 aa14.86□□□□□ -0.03
SDC1-206ENST00000482879 VIL1P09327 827 aaKnown RBP14.85□□□□□ -0.03
SDC1-206ENST00000482879 FKBP1AP62942 108 aaKnown RBP14.85□□□□□ -0.03
SDC1-206ENST00000482879 SPTY2D1Q68D10 685 aaPredicted RBP14.85□□□□□ -0.03
SDC1-206ENST00000482879 ERICH6Q7L0X2 663 aa14.85□□□□□ -0.03
SDC1-206ENST00000482879 CNTROBQ8N137 903 aa14.85□□□□□ -0.03
SDC1-206ENST00000482879 EVI5LQ96CN4 794 aa14.85□□□□□ -0.03
SDC1-206ENST00000482879 LRP2BPQ9P2M1 347 aa14.85□□□□□ -0.03
SDC1-206ENST00000482879 DOCK2Q92608 1830 aa14.85□□□□□ -0.03
SDC1-206ENST00000482879 IDH1O75874 414 aaKnown RBP14.84□□□□□ -0.03
SDC1-206ENST00000482879 LDHBP07195 334 aaKnown RBP14.84□□□□□ -0.03
SDC1-206ENST00000482879 SDSP20132 328 aa14.84□□□□□ -0.03
SDC1-206ENST00000482879 BMP2KLQ5H9B9 411 aa14.84□□□□□ -0.03
SDC1-206ENST00000482879 RSBN1LQ6PCB5 846 aaPredicted RBP14.84□□□□□ -0.03
SDC1-206ENST00000482879 CERS5Q8N5B7 392 aa14.84□□□□□ -0.03
SDC1-206ENST00000482879 KBTBD3Q8NAB2 608 aa14.84□□□□□ -0.03
SDC1-206ENST00000482879 FSD1Q9BTV5 496 aa14.84□□□□□ -0.03
SDC1-206ENST00000482879 RAI14Q9P0K7 980 aa14.84□□□□□ -0.03
SDC1-206ENST00000482879 GJA3Q9Y6H8 435 aa14.84□□□□□ -0.03
SDC1-206ENST00000482879 ZNF541Q9H0D2 1346 aa14.84□□□□□ -0.03
SDC1-206ENST00000482879 MAP3K12Q12852 859 aa14.83□□□□□ -0.04
SDC1-206ENST00000482879 GRIK5Q16478 980 aa14.83□□□□□ -0.04
SDC1-206ENST00000482879 SUGT1Q9Y2Z0 365 aa14.83□□□□□ -0.04
SDC1-206ENST00000482879 ZBTB12Q9Y330 459 aaPredicted RBP14.83□□□□□ -0.04
SDC1-206ENST00000482879 MYH2Q9UKX2 1941 aa14.83□□□□□ -0.04
SDC1-206ENST00000482879 F8W031 263 aaPredicted RBP14.82□□□□□ -0.04
SDC1-206ENST00000482879 PRDX5P30044 214 aa14.82□□□□□ -0.04
SDC1-206ENST00000482879 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.82□□□□□ -0.04
SDC1-206ENST00000482879 MYO3BQ8WXR4 1341 aa14.82□□□□□ -0.04
SDC1-206ENST00000482879 ZC3H4Q9UPT8 1303 aaKnown RBP14.82□□□□□ -0.04
SDC1-206ENST00000482879 UTRNP46939 3433 aa14.81□□□□□ -0.04
SDC1-206ENST00000482879 LRRFIP1Q32MZ4 808 aaKnown RBP14.81□□□□□ -0.04
SDC1-206ENST00000482879 DPY19L2Q6NUT2 758 aa14.81□□□□□ -0.04
SDC1-206ENST00000482879 DZIP1Q86YF9 867 aaKnown RBP14.81□□□□□ -0.04
SDC1-206ENST00000482879 KIAA0825Q8IV33 1275 aa14.81□□□□□ -0.04
SDC1-206ENST00000482879 GPC2Q8N158 579 aa14.81□□□□□ -0.04
SDC1-206ENST00000482879 AGBL3Q8NEM8 1001 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms