RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 C2CD2LO14523 706 aa9.35□□□□□ -0.91
CCDC88A-213ENST00000476903 RFC5P40937 340 aa9.35□□□□□ -0.91
CCDC88A-213ENST00000476903 DOT1LQ8TEK3 1739 aa9.35□□□□□ -0.91
CCDC88A-213ENST00000476903 ARHGEF10LQ9HCE6 1279 aa9.35□□□□□ -0.91
CCDC88A-213ENST00000476903 HRH3Q9Y5N1 445 aa9.35□□□□□ -0.91
CCDC88A-213ENST00000476903 MEGF6O75095 1541 aa9.35□□□□□ -0.91
CCDC88A-213ENST00000476903 KCNQ2O43526 872 aa9.34□□□□□ -0.91
CCDC88A-213ENST00000476903 HSP90AB2PQ58FF8 381 aa9.34□□□□□ -0.91
CCDC88A-213ENST00000476903 NBPF6Q5VWK0 638 aa9.34□□□□□ -0.91
CCDC88A-213ENST00000476903 CYP2U1Q7Z449 544 aa9.34□□□□□ -0.91
CCDC88A-213ENST00000476903 DDX54Q8TDD1 881 aaKnown RBP9.34□□□□□ -0.91
CCDC88A-213ENST00000476903 ACSBG1Q96GR2 724 aa9.34□□□□□ -0.91
CCDC88A-213ENST00000476903 NBPF4Q96M43 638 aa9.34□□□□□ -0.91
CCDC88A-213ENST00000476903 GDF2Q9UK05 429 aaPredicted RBP9.34□□□□□ -0.91
CCDC88A-213ENST00000476903 TXNRD1Q16881 649 aa9.33□□□□□ -0.92
CCDC88A-213ENST00000476903 ZCRB1Q8TBF4 217 aaKnown RBP9.33□□□□□ -0.92
CCDC88A-213ENST00000476903 RAPGEF4Q8WZA2 1011 aa9.33□□□□□ -0.92
CCDC88A-213ENST00000476903 KDM4CQ9H3R0 1056 aa9.33□□□□□ -0.92
CCDC88A-213ENST00000476903 GPBP1L1Q9HC44 474 aaPredicted RBP9.33□□□□□ -0.92
CCDC88A-213ENST00000476903 CASZ1Q86V15 1759 aa9.32□□□□□ -0.92
CCDC88A-213ENST00000476903 PKD1L3Q7Z443 1732 aa9.32□□□□□ -0.92
CCDC88A-213ENST00000476903 C1QTNF9BB2RNN3 333 aa9.32□□□□□ -0.92
CCDC88A-213ENST00000476903 PPM1GO15355 546 aaPredicted RBP9.32□□□□□ -0.92
CCDC88A-213ENST00000476903 IL2RAP01589 272 aa9.32□□□□□ -0.92
CCDC88A-213ENST00000476903 CD163Q86VB7 1156 aa9.32□□□□□ -0.92
CCDC88A-213ENST00000476903 USHBP1Q8N6Y0 703 aa9.32□□□□□ -0.92
CCDC88A-213ENST00000476903 PANK3Q9H999 370 aa9.32□□□□□ -0.92
CCDC88A-213ENST00000476903 GPAMQ9HCL2 828 aa9.32□□□□□ -0.92
CCDC88A-213ENST00000476903 NSD2O96028 1365 aa9.32□□□□□ -0.92
CCDC88A-213ENST00000476903 TATP17735 454 aaPredicted RBP9.31□□□□□ -0.92
CCDC88A-213ENST00000476903 CENPCQ03188 943 aa9.31□□□□□ -0.92
CCDC88A-213ENST00000476903 GOLGA6L1Q8N7Z2 621 aa9.31□□□□□ -0.92
CCDC88A-213ENST00000476903 DDRGK1Q96HY6 314 aa9.31□□□□□ -0.92
CCDC88A-213ENST00000476903 RRAGCQ9HB90 399 aa9.31□□□□□ -0.92
CCDC88A-213ENST00000476903 NDFIP2Q9NV92 336 aa9.31□□□□□ -0.92
CCDC88A-213ENST00000476903 STK32BQ9NY57 414 aa9.31□□□□□ -0.92
CCDC88A-213ENST00000476903 LY75O60449 1722 aa9.31□□□□□ -0.92
CCDC88A-213ENST00000476903 PAPPAQ13219 1627 aa9.31□□□□□ -0.92
CCDC88A-213ENST00000476903 WASHC2AQ641Q2 1341 aa9.31□□□□□ -0.92
CCDC88A-213ENST00000476903 GRIN2CQ14957 1233 aa9.3□□□□□ -0.92
CCDC88A-213ENST00000476903 RNF20Q5VTR2 975 aa9.3□□□□□ -0.92
CCDC88A-213ENST00000476903 ESYT1Q9BSJ8 1104 aa9.3□□□□□ -0.92
CCDC88A-213ENST00000476903 SPON1Q9HCB6 807 aa9.3□□□□□ -0.92
CCDC88A-213ENST00000476903 RAB6BQ9NRW1 208 aa9.3□□□□□ -0.92
CCDC88A-213ENST00000476903 POLKQ9UBT6 870 aa9.3□□□□□ -0.92
CCDC88A-213ENST00000476903 ITGB4P16144 1822 aa9.3□□□□□ -0.92
CCDC88A-213ENST00000476903 NCAPD2Q15021 1401 aa9.3□□□□□ -0.92
CCDC88A-213ENST00000476903 PCDH11XQ9BZA7 1347 aa9.3□□□□□ -0.92
CCDC88A-213ENST00000476903 PCDH11YQ9BZA8 1340 aa9.3□□□□□ -0.92
CCDC88A-213ENST00000476903 QSER1Q2KHR3 1735 aa9.29□□□□□ -0.92
CCDC88A-213ENST00000476903 TNNT2P45379 298 aaPredicted RBP9.29□□□□□ -0.92
CCDC88A-213ENST00000476903 CNKSR1Q969H4 720 aa9.29□□□□□ -0.92
CCDC88A-213ENST00000476903 SYTL4Q96C24 671 aaPredicted RBP9.29□□□□□ -0.92
CCDC88A-213ENST00000476903 FHDC1Q9C0D6 1143 aaPredicted RBP9.29□□□□□ -0.92
CCDC88A-213ENST00000476903 PHF24Q9UPV7 400 aa9.29□□□□□ -0.92
CCDC88A-213ENST00000476903 A0A1B0GTH6 734 aa9.28□□□□□ -0.92
CCDC88A-213ENST00000476903 CHRNA4P43681 627 aa9.28□□□□□ -0.92
CCDC88A-213ENST00000476903 PHKA2P46019 1235 aa9.28□□□□□ -0.92
CCDC88A-213ENST00000476903 LBRQ14739 615 aaKnown RBP9.28□□□□□ -0.92
CCDC88A-213ENST00000476903 SLC15A2Q16348 729 aa9.28□□□□□ -0.92
CCDC88A-213ENST00000476903 SLCO4C1Q6ZQN7 724 aa9.28□□□□□ -0.92
CCDC88A-213ENST00000476903 BTBD6Q96KE9 485 aa9.28□□□□□ -0.92
CCDC88A-213ENST00000476903 GGA1Q9UJY5 639 aa9.28□□□□□ -0.92
CCDC88A-213ENST00000476903 KNSTRNQ9Y448 316 aa9.28□□□□□ -0.92
CCDC88A-213ENST00000476903 PCDHB11Q9Y5F2 797 aa9.28□□□□□ -0.92
CCDC88A-213ENST00000476903 KIF7Q2M1P5 1343 aa9.28□□□□□ -0.92
CCDC88A-213ENST00000476903 TUBGCP6Q96RT7 1819 aa9.27□□□□□ -0.93
CCDC88A-213ENST00000476903 GNRH1P01148 92 aa9.27□□□□□ -0.93
CCDC88A-213ENST00000476903 CTBSQ01459 385 aa9.27□□□□□ -0.93
CCDC88A-213ENST00000476903 MORC1Q86VD1 984 aa9.27□□□□□ -0.93
CCDC88A-213ENST00000476903 XAGE2Q96GT9 111 aa9.27□□□□□ -0.93
CCDC88A-213ENST00000476903 PPP1R1BQ9UD71 204 aaPredicted RBP9.27□□□□□ -0.93
CCDC88A-213ENST00000476903 ATXN7L1Q9ULK2 861 aaPredicted RBP9.27□□□□□ -0.93
CCDC88A-213ENST00000476903 SPG7Q9UQ90 795 aa9.27□□□□□ -0.93
CCDC88A-213ENST00000476903 TOGARAM1Q9Y4F4 1720 aa9.27□□□□□ -0.93
CCDC88A-213ENST00000476903 GNB5O14775 395 aa9.26□□□□□ -0.93
CCDC88A-213ENST00000476903 BNIP3LO60238 219 aa9.26□□□□□ -0.93
CCDC88A-213ENST00000476903 GPR37L1O60883 481 aa9.26□□□□□ -0.93
CCDC88A-213ENST00000476903 DGKGP49619 791 aa9.26□□□□□ -0.93
CCDC88A-213ENST00000476903 EIF4A2Q14240 407 aaKnown RBP9.26□□□□□ -0.93
CCDC88A-213ENST00000476903 RUBCNLQ9H714 662 aa9.26□□□□□ -0.93
CCDC88A-213ENST00000476903 TAF1LQ8IZX4 1826 aa9.26□□□□□ -0.93
CCDC88A-213ENST00000476903 PLEKHG2Q9H7P9 1386 aa9.25□□□□□ -0.93
CCDC88A-213ENST00000476903 CYP27B1O15528 508 aa9.25□□□□□ -0.93
CCDC88A-213ENST00000476903 ZBTB7AO95365 584 aa9.25□□□□□ -0.93
CCDC88A-213ENST00000476903 EPXP11678 715 aa9.25□□□□□ -0.93
CCDC88A-213ENST00000476903 MSX1P28360 303 aa9.25□□□□□ -0.93
CCDC88A-213ENST00000476903 C4orf17Q53FE4 359 aa9.25□□□□□ -0.93
CCDC88A-213ENST00000476903 ABHD17AQ96GS6 310 aa9.25□□□□□ -0.93
CCDC88A-213ENST00000476903 PDGFDQ9GZP0 370 aaPredicted RBP9.25□□□□□ -0.93
CCDC88A-213ENST00000476903 C5P01031 1676 aa9.25□□□□□ -0.93
CCDC88A-213ENST00000476903 BMP4P12644 408 aa9.24□□□□□ -0.93
CCDC88A-213ENST00000476903 HMGB2P26583 209 aaKnown RBP9.24□□□□□ -0.93
CCDC88A-213ENST00000476903 MCCD1P59942 119 aaPredicted RBP9.24□□□□□ -0.93
CCDC88A-213ENST00000476903 ZNF827Q17R98 1081 aa9.24□□□□□ -0.93
CCDC88A-213ENST00000476903 ZSCAN10Q96SZ4 725 aaPredicted RBP9.24□□□□□ -0.93
CCDC88A-213ENST00000476903 MTFR1LQ9H019 292 aa9.24□□□□□ -0.93
CCDC88A-213ENST00000476903 CCNL1Q9UK58 526 aaPredicted RBP9.24□□□□□ -0.93
CCDC88A-213ENST00000476903 HCN2Q9UL51 889 aa9.24□□□□□ -0.93
CCDC88A-213ENST00000476903 IGSF1Q8N6C5 1336 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 184.3 ms