RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 MTMR6Q9Y217 621 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 MARCH6O60337 910 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 SFPQP23246 707 aaKnown RBP eCLIP5.8□□□□□ -1.48
CCDC39-204ENST00000476379 ZNF445P59923 1031 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 LRRC24Q50LG9 513 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 USPL1Q5W0Q7 1092 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 FAM200AQ8TCP9 573 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 LZTFL1Q9NQ48 299 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 CHD2O14647 1828 aaKnown RBP5.8□□□□□ -1.48
CCDC39-204ENST00000476379 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.8□□□□□ -1.48
CCDC39-204ENST00000476379 MATR3P43243 847 aaKnown RBP eCLIP5.8□□□□□ -1.48
CCDC39-204ENST00000476379 CEP135Q66GS9 1140 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 LDHAL6AQ6ZMR3 332 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 ZHX3Q9H4I2 956 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 RAI14Q9P0K7 980 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 SSH2Q76I76 1423 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 MED1Q15648 1581 aaPredicted RBP5.79□□□□□ -1.48
CCDC39-204ENST00000476379 RANBP6O60518 1105 aaKnown RBP5.79□□□□□ -1.48
CCDC39-204ENST00000476379 HSPA4P34932 840 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 CRKLP46109 303 aaKnown RBP5.79□□□□□ -1.48
CCDC39-204ENST00000476379 HMGN5P82970 282 aaKnown RBP5.79□□□□□ -1.48
CCDC39-204ENST00000476379 PTPROQ16827 1216 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 KCTD19Q17RG1 926 aaPredicted RBP5.79□□□□□ -1.48
CCDC39-204ENST00000476379 AK7Q96M32 723 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 USP28Q96RU2 1077 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 LRP2BPQ9P2M1 347 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 PUF60Q9UHX1 559 aaKnown RBP5.79□□□□□ -1.48
CCDC39-204ENST00000476379 BAZ2BQ9UIF8 2168 aaKnown RBP5.79□□□□□ -1.48
CCDC39-204ENST00000476379 SPATA31A5Q5VU36 1347 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 SPATA31A7Q8IWB4 1347 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 RAD50Q92878 1312 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 USP27XA6NNY8 438 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 ANKRD65E5RJM6 399 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 GIGYF1O75420 1035 aaPredicted RBP5.79□□□□□ -1.48
CCDC39-204ENST00000476379 MCM6Q14566 821 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 CPLX2Q6PUV4 134 aaKnown RBP5.79□□□□□ -1.48
CCDC39-204ENST00000476379 C11orf57Q6ZUT1 292 aaPredicted RBP5.79□□□□□ -1.48
CCDC39-204ENST00000476379 DCAF5Q96JK2 942 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 CLIC6Q96NY7 704 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 DESI2Q9BSY9 194 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 VAT1LQ9HCJ6 419 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 PCDH11XQ9BZA7 1347 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 PCDH11YQ9BZA8 1340 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 ANKARQ7Z5J8 1434 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 B4E1Z4 1266 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 SSBP05455 408 aaKnown RBP eCLIP5.79□□□□□ -1.48
CCDC39-204ENST00000476379 TPM3P06753 285 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 ATP2B3Q16720 1220 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 KSR2Q6VAB6 950 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 ERC1Q8IUD2 1116 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 ZNF526Q8TF50 670 aaPredicted RBP5.79□□□□□ -1.48
CCDC39-204ENST00000476379 LEO1Q8WVC0 666 aaPredicted RBP5.79□□□□□ -1.48
CCDC39-204ENST00000476379 AIDAQ96BJ3 306 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 UTP14AQ9BVJ6 771 aaKnown RBP5.79□□□□□ -1.48
CCDC39-204ENST00000476379 CENPHQ9H3R5 247 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 KCNJ14Q9UNX9 436 aa5.79□□□□□ -1.48
CCDC39-204ENST00000476379 NIP7Q9Y221 180 aaKnown RBP eCLIP5.79□□□□□ -1.48
CCDC39-204ENST00000476379 POLR1AO95602 1720 aaPredicted RBP5.78□□□□□ -1.48
CCDC39-204ENST00000476379 SLC3A2P08195 630 aaKnown RBP5.78□□□□□ -1.48
CCDC39-204ENST00000476379 ADD1P35611 737 aaKnown RBP5.78□□□□□ -1.48
CCDC39-204ENST00000476379 GYS2P54840 703 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 MRPS25P82663 173 aaKnown RBP5.78□□□□□ -1.48
CCDC39-204ENST00000476379 AMOTQ4VCS5 1084 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 DZIP3Q86Y13 1208 aaKnown RBP5.78□□□□□ -1.48
CCDC39-204ENST00000476379 GRAMD1CQ8IYS0 662 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 LINC00116Q8NCU8 138 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 PSMB7Q99436 277 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 SCAND2PQ9GZW5 306 aaPredicted RBP5.78□□□□□ -1.48
CCDC39-204ENST00000476379 HYPKQ9NX55 129 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 TRMT112Q9UI30 125 aaKnown RBP5.78□□□□□ -1.48
CCDC39-204ENST00000476379 NCOA3Q9Y6Q9 1424 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 UBE2Q2LH0YL09 131 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 IFIT3O14879 490 aaKnown RBP5.78□□□□□ -1.48
CCDC39-204ENST00000476379 CASP1P29466 404 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 DNAJC21Q5F1R6 531 aaKnown RBP5.78□□□□□ -1.48
CCDC39-204ENST00000476379 SLC9C2Q5TAH2 1124 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 UBXN4Q92575 508 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 LSG1Q9H089 658 aaKnown RBP5.78□□□□□ -1.48
CCDC39-204ENST00000476379 DENND2AQ9ULE3 1009 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 NSD2O96028 1365 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 PIK3C2AO00443 1686 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 SETD1AO15047 1707 aaKnown RBP5.78□□□□□ -1.48
CCDC39-204ENST00000476379 ERICH2A1L162 156 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 ZNF213O14771 459 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 ZNF853P0CG23 659 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 ADORA1P30542 326 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 GNG11P61952 73 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 MPHOSPH8Q99549 860 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 CFAP45Q9UL16 551 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 ZNF215Q9UL58 517 aaPredicted RBP5.78□□□□□ -1.48
CCDC39-204ENST00000476379 COL5A2P05997 1499 aaPredicted RBP5.78□□□□□ -1.48
CCDC39-204ENST00000476379 NPC1L1Q9UHC9 1359 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 RFC4P35249 363 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 ERCC6LQ2NKX8 1250 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 KSR1Q8IVT5 923 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 CNNM3Q8NE01 707 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 CACTINQ8WUQ7 758 aaKnown RBP5.78□□□□□ -1.48
CCDC39-204ENST00000476379 CCDC102AQ96A19 550 aa5.78□□□□□ -1.48
CCDC39-204ENST00000476379 ZSCAN31Q96LW9 406 aaPredicted RBP5.78□□□□□ -1.48
CCDC39-204ENST00000476379 DBNLQ9UJU6 430 aaKnown RBP5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms