RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 CDC5LQ99459 802 aaKnown RBP11.63□□□□□ -0.55
USP39-214ENST00000474572 MPHOSPH8Q99549 860 aa11.63□□□□□ -0.55
USP39-214ENST00000474572 SALL1Q9NSC2 1324 aa11.62□□□□□ -0.55
USP39-214ENST00000474572 CACNA1SQ13698 1873 aa11.62□□□□□ -0.55
USP39-214ENST00000474572 FGAP02671 866 aa11.62□□□□□ -0.55
USP39-214ENST00000474572 PDE6AP16499 860 aa11.62□□□□□ -0.55
USP39-214ENST00000474572 SCRN1Q12765 414 aa11.62□□□□□ -0.55
USP39-214ENST00000474572 RASGRF1Q13972 1273 aa11.62□□□□□ -0.55
USP39-214ENST00000474572 ALX1Q15699 326 aa11.62□□□□□ -0.55
USP39-214ENST00000474572 IMMTQ16891 758 aaKnown RBP11.62□□□□□ -0.55
USP39-214ENST00000474572 WASHC4Q2M389 1173 aa11.62□□□□□ -0.55
USP39-214ENST00000474572 LARP1BQ659C4 914 aaKnown RBP11.62□□□□□ -0.55
USP39-214ENST00000474572 TTLL5Q6EMB2 1281 aa11.62□□□□□ -0.55
USP39-214ENST00000474572 PTF1AQ7RTS3 328 aa11.62□□□□□ -0.55
USP39-214ENST00000474572 MB21D2Q8IYB1 491 aaPredicted RBP11.62□□□□□ -0.55
USP39-214ENST00000474572 SPATA5Q8NB90 893 aa11.62□□□□□ -0.55
USP39-214ENST00000474572 BRF1Q92994 677 aa11.62□□□□□ -0.55
USP39-214ENST00000474572 ZNF274Q96GC6 653 aaPredicted RBP11.62□□□□□ -0.55
USP39-214ENST00000474572 ZNF532Q9HCE3 1301 aa11.61□□□□□ -0.55
USP39-214ENST00000474572 CHRNDQ07001 517 aa11.61□□□□□ -0.55
USP39-214ENST00000474572 UBE4AQ14139 1066 aa11.61□□□□□ -0.55
USP39-214ENST00000474572 CSPP1Q1MSJ5 1256 aa11.61□□□□□ -0.55
USP39-214ENST00000474572 ERFEQ4G0M1 354 aa11.61□□□□□ -0.55
USP39-214ENST00000474572 SLC9C2Q5TAH2 1124 aa11.61□□□□□ -0.55
USP39-214ENST00000474572 TBC1D9BQ66K14 1250 aa11.61□□□□□ -0.55
USP39-214ENST00000474572 LRSAM1Q6UWE0 723 aa11.61□□□□□ -0.55
USP39-214ENST00000474572 CDC37L1Q7L3B6 337 aa11.61□□□□□ -0.55
USP39-214ENST00000474572 NSUN7Q8NE18 718 aaKnown RBP11.61□□□□□ -0.55
USP39-214ENST00000474572 HELBQ8NG08 1087 aaPredicted RBP11.61□□□□□ -0.55
USP39-214ENST00000474572 CHMP4CQ96CF2 233 aa11.61□□□□□ -0.55
USP39-214ENST00000474572 GJD4Q96KN9 370 aaPredicted RBP11.61□□□□□ -0.55
USP39-214ENST00000474572 PANK2Q9BZ23 570 aa11.61□□□□□ -0.55
USP39-214ENST00000474572 NYXQ9GZU5 481 aa11.61□□□□□ -0.55
USP39-214ENST00000474572 RBM27Q9P2N5 1060 aaKnown RBP11.61□□□□□ -0.55
USP39-214ENST00000474572 WWC3Q9ULE0 1092 aa11.61□□□□□ -0.55
USP39-214ENST00000474572 CNPY2Q9Y2B0 182 aa11.61□□□□□ -0.55
USP39-214ENST00000474572 ELP1O95163 1332 aa11.6□□□□□ -0.55
USP39-214ENST00000474572 ECM29Q5VYK3 1845 aa11.6□□□□□ -0.55
USP39-214ENST00000474572 COL1A1P02452 1464 aaPredicted RBP11.6□□□□□ -0.55
USP39-214ENST00000474572 FAM177BA6PVY3 158 aa11.6□□□□□ -0.55
USP39-214ENST00000474572 GADD45BO75293 160 aaPredicted RBP11.6□□□□□ -0.55
USP39-214ENST00000474572 UBE2HP62256 183 aa11.6□□□□□ -0.55
USP39-214ENST00000474572 HMGN5P82970 282 aaKnown RBP11.6□□□□□ -0.55
USP39-214ENST00000474572 C3orf67Q6ZVT6 689 aa11.6□□□□□ -0.55
USP39-214ENST00000474572 STRBPQ96SI9 672 aaKnown RBP11.6□□□□□ -0.55
USP39-214ENST00000474572 NBPF3Q9H094 633 aa11.6□□□□□ -0.55
USP39-214ENST00000474572 BSDC1Q9NW68 430 aaPredicted RBP11.6□□□□□ -0.55
USP39-214ENST00000474572 PNPLA7Q6ZV29 1317 aa11.6□□□□□ -0.55
USP39-214ENST00000474572 BRWD3Q6RI45 1802 aa11.59□□□□□ -0.55
USP39-214ENST00000474572 VPS37CA5D8V6 355 aaPredicted RBP11.59□□□□□ -0.55
USP39-214ENST00000474572 JAK2O60674 1132 aa11.59□□□□□ -0.55
USP39-214ENST00000474572 CTDNEP1O95476 244 aa11.59□□□□□ -0.55
USP39-214ENST00000474572 NCLP19338 710 aaKnown RBP11.59□□□□□ -0.55
USP39-214ENST00000474572 PDIA3P30101 505 aaKnown RBP11.59□□□□□ -0.55
USP39-214ENST00000474572 ANTXR2P58335 489 aa11.59□□□□□ -0.55
USP39-214ENST00000474572 DNM1Q05193 864 aaKnown RBP11.59□□□□□ -0.55
USP39-214ENST00000474572 APOBRQ0VD83 1088 aa11.59□□□□□ -0.55
USP39-214ENST00000474572 RESTQ13127 1097 aa11.59□□□□□ -0.55
USP39-214ENST00000474572 STK3Q13188 491 aa11.59□□□□□ -0.55
USP39-214ENST00000474572 ANKRD18AQ8IVF6 992 aa11.59□□□□□ -0.55
USP39-214ENST00000474572 RGS22Q8NE09 1264 aa11.59□□□□□ -0.55
USP39-214ENST00000474572 NCOA7Q8NI08 942 aa11.59□□□□□ -0.55
USP39-214ENST00000474572 CERKQ8TCT0 537 aa11.59□□□□□ -0.55
USP39-214ENST00000474572 SYAP1Q96A49 352 aaPredicted RBP11.59□□□□□ -0.55
USP39-214ENST00000474572 LRRC2Q9BYS8 371 aa11.59□□□□□ -0.55
USP39-214ENST00000474572 GDPD2Q9HCC8 539 aa11.59□□□□□ -0.55
USP39-214ENST00000474572 CCNL1Q9UK58 526 aaPredicted RBP11.59□□□□□ -0.55
USP39-214ENST00000474572 PDS5AQ29RF7 1337 aaKnown RBP11.59□□□□□ -0.55
USP39-214ENST00000474572 CARMIL3Q8ND23 1372 aa11.58□□□□□ -0.56
USP39-214ENST00000474572 SNAP23O00161 211 aa11.58□□□□□ -0.56
USP39-214ENST00000474572 ZNF213O14771 459 aa11.58□□□□□ -0.56
USP39-214ENST00000474572 IDH1O75874 414 aaKnown RBP11.58□□□□□ -0.56
USP39-214ENST00000474572 MCM5P33992 734 aa11.58□□□□□ -0.56
USP39-214ENST00000474572 KRT85P78386 507 aa11.58□□□□□ -0.56
USP39-214ENST00000474572 MAP3K12Q12852 859 aa11.58□□□□□ -0.56
USP39-214ENST00000474572 PPP1R9BQ96SB3 815 aa11.58□□□□□ -0.56
USP39-214ENST00000474572 RTCBQ9Y3I0 505 aaKnown RBP11.58□□□□□ -0.56
USP39-214ENST00000474572 AFF2P51816 1311 aa11.58□□□□□ -0.56
USP39-214ENST00000474572 LAMB1P07942 1786 aa11.57□□□□□ -0.56
USP39-214ENST00000474572 DLEC1Q9Y238 1755 aa11.57□□□□□ -0.56
USP39-214ENST00000474572 PTPDC1A2A3K4 754 aa11.57□□□□□ -0.56
USP39-214ENST00000474572 PATL2C9JE40 543 aaKnown RBP11.57□□□□□ -0.56
USP39-214ENST00000474572 GNPATO15228 680 aa11.57□□□□□ -0.56
USP39-214ENST00000474572 PRC1O43663 620 aa11.57□□□□□ -0.56
USP39-214ENST00000474572 KCNQ4P56696 695 aa11.57□□□□□ -0.56
USP39-214ENST00000474572 NAA16Q6N069 864 aaPredicted RBP11.57□□□□□ -0.56
USP39-214ENST00000474572 TTC6Q86TZ1 520 aa11.57□□□□□ -0.56
USP39-214ENST00000474572 ZSCAN16Q9H4T2 348 aaPredicted RBP11.57□□□□□ -0.56
USP39-214ENST00000474572 EPB41L4AQ9HCS5 686 aaPredicted RBP11.57□□□□□ -0.56
USP39-214ENST00000474572 SRP68Q9UHB9 627 aaKnown RBP11.57□□□□□ -0.56
USP39-214ENST00000474572 TRPC5Q9UL62 973 aaPredicted RBP11.57□□□□□ -0.56
USP39-214ENST00000474572 MINPP1Q9UNW1 487 aa11.57□□□□□ -0.56
USP39-214ENST00000474572 NID2Q14112 1375 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 SYCE3A1L190 88 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 LRRC37AA6NMS7 1700 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 SEMA3EO15041 775 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 FIBPO43427 364 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 DTNBO60941 627 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 PHF14O94880 888 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 LETM1O95202 739 aaPredicted RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms