RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 USP16Q9Y5T5 823 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 KIF1AQ12756 1690 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 TMEM94Q12767 1356 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 E7EWF7 191 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 ARHGAP6O43182 974 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 PPP6R2O75170 966 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 TUBBP07437 444 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 SLFN14P0C7P3 912 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 H2AFXP16104 143 aaPredicted RBP7.08□□□□□ -1.28
HERC4-209ENST00000473533 KCNA6P17658 529 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 PDIA3P30101 505 aaKnown RBP7.08□□□□□ -1.28
HERC4-209ENST00000473533 MYL5Q02045 173 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 TRDNQ13061 729 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 TRIM29Q14134 588 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 KMT5BQ4FZB7 885 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 CCDC158Q5M9N0 1113 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 PLBD2Q8NHP8 589 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 WASF1Q92558 559 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 JARID2Q92833 1246 aaPredicted RBP7.08□□□□□ -1.28
HERC4-209ENST00000473533 CWC15Q9P013 229 aaKnown RBP7.08□□□□□ -1.28
HERC4-209ENST00000473533 RFX5P48382 616 aaPredicted RBP7.07□□□□□ -1.28
HERC4-209ENST00000473533 APOBRQ0VD83 1088 aa7.07□□□□□ -1.28
HERC4-209ENST00000473533 GNL2Q13823 731 aaKnown RBP7.07□□□□□ -1.28
HERC4-209ENST00000473533 ELF2Q15723 593 aa7.07□□□□□ -1.28
HERC4-209ENST00000473533 PROSER3Q2NL68 480 aa7.07□□□□□ -1.28
HERC4-209ENST00000473533 NCOA7Q8NI08 942 aa7.07□□□□□ -1.28
HERC4-209ENST00000473533 GOLPH3LQ9H4A5 285 aa7.07□□□□□ -1.28
HERC4-209ENST00000473533 IFNKQ9P0W0 207 aa7.07□□□□□ -1.28
HERC4-209ENST00000473533 GCP02774 474 aa7.07□□□□□ -1.28
HERC4-209ENST00000473533 IFIT1P09914 478 aaKnown RBP7.07□□□□□ -1.28
HERC4-209ENST00000473533 MYSM1Q5VVJ2 828 aa7.07□□□□□ -1.28
HERC4-209ENST00000473533 FBXO38Q6PIJ6 1188 aa7.07□□□□□ -1.28
HERC4-209ENST00000473533 COPS6Q7L5N1 327 aa7.07□□□□□ -1.28
HERC4-209ENST00000473533 IFNL2Q8IZJ0 200 aa7.07□□□□□ -1.28
HERC4-209ENST00000473533 FBXO18Q8NFZ0 1043 aa7.07□□□□□ -1.28
HERC4-209ENST00000473533 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.07□□□□□ -1.283e-7■■■□□ 18.5
HERC4-209ENST00000473533 TRMT1Q9NXH9 659 aaKnown RBP7.07□□□□□ -1.28
HERC4-209ENST00000473533 SERPINC1P01008 464 aa7.07□□□□□ -1.28
HERC4-209ENST00000473533 TOP1P11387 765 aaKnown RBP7.07□□□□□ -1.28
HERC4-209ENST00000473533 FANCCQ00597 558 aa7.07□□□□□ -1.28
HERC4-209ENST00000473533 ANO1Q5XXA6 986 aa7.07□□□□□ -1.28
HERC4-209ENST00000473533 KANK3Q6NY19 840 aa7.07□□□□□ -1.28
HERC4-209ENST00000473533 DBNDD2Q9BQY9 259 aa7.07□□□□□ -1.28
HERC4-209ENST00000473533 XPO4Q9C0E2 1151 aaKnown RBP7.07□□□□□ -1.28
HERC4-209ENST00000473533 ORC3Q9UBD5 711 aaPredicted RBP7.07□□□□□ -1.28
HERC4-209ENST00000473533 AFDNP55196 1824 aaKnown RBP7.06□□□□□ -1.28
HERC4-209ENST00000473533 FER1L4A9Z1Z3 1794 aa7.06□□□□□ -1.28
HERC4-209ENST00000473533 A0A087WZG4 1122 aa7.06□□□□□ -1.28
HERC4-209ENST00000473533 ZNF202O95125 648 aa7.06□□□□□ -1.28
HERC4-209ENST00000473533 SYKP43405 635 aa7.06□□□□□ -1.28
HERC4-209ENST00000473533 PDIA6Q15084 440 aa7.06□□□□□ -1.28
HERC4-209ENST00000473533 GPR161Q8N6U8 529 aaKnown RBP7.06□□□□□ -1.28
HERC4-209ENST00000473533 AK7Q96M32 723 aa7.06□□□□□ -1.28
HERC4-209ENST00000473533 PXDNQ92626 1479 aa7.06□□□□□ -1.28
HERC4-209ENST00000473533 MST1RQ04912 1400 aa7.06□□□□□ -1.28
HERC4-209ENST00000473533 HSPD1P10809 573 aaKnown RBP7.06□□□□□ -1.28
HERC4-209ENST00000473533 UBASH3AP57075 661 aa7.06□□□□□ -1.28
HERC4-209ENST00000473533 CCDC93Q567U6 631 aa7.06□□□□□ -1.28
HERC4-209ENST00000473533 SYT10Q6XYQ8 523 aa7.06□□□□□ -1.28
HERC4-209ENST00000473533 DDX46Q7L014 1031 aaKnown RBP7.06□□□□□ -1.28
HERC4-209ENST00000473533 DCAF5Q96JK2 942 aa7.06□□□□□ -1.28
HERC4-209ENST00000473533 SCN11AQ9UI33 1791 aa7.06□□□□□ -1.28
HERC4-209ENST00000473533 GOLIM4O00461 696 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 CUTAO60888 179 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 CTDNEP1O95476 244 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 CCT2P78371 535 aaKnown RBP7.05□□□□□ -1.28
HERC4-209ENST00000473533 SLC39A14Q15043 492 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 ARHGAP29Q52LW3 1261 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 ESCO1Q5FWF5 840 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 GORABQ5T7V8 394 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 UBE3BQ7Z3V4 1068 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 TRIML1Q8N9V2 468 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 NEUROD6Q96NK8 337 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 ACBD3Q9H3P7 528 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 CWC25Q9NXE8 425 aaPredicted RBP7.05□□□□□ -1.28
HERC4-209ENST00000473533 TUBE1Q9UJT0 475 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 FAM237AA0A1B0GTK4 181 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 CASQ1P31415 396 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 NDUFA8P51970 172 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 E4F1Q66K89 784 aaPredicted RBP7.05□□□□□ -1.28
HERC4-209ENST00000473533 CCDC102BQ68D86 513 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 ANKLE2Q86XL3 938 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 GBP3Q9H0R5 595 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 CEP126Q9P2H0 1117 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 LAMB4A4D0S4 1761 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 LAMA4Q16363 1823 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 A0A1B0GVL5 298 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 USP27XA6NNY8 438 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 GOLGA8BA8MQT2 603 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 EYA2O00167 538 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 STX10O60499 249 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 ERLIN1O75477 346 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 MYL6BP14649 208 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 SAFBQ15424 915 aaKnown RBP eCLIP7.05□□□□□ -1.28
HERC4-209ENST00000473533 CFAP100Q494V2 611 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 LRRC59Q96AG4 307 aaKnown RBP7.05□□□□□ -1.28
HERC4-209ENST00000473533 NAA15Q9BXJ9 866 aaKnown RBP7.05□□□□□ -1.28
HERC4-209ENST00000473533 CEP131Q9UPN4 1083 aa7.05□□□□□ -1.28
HERC4-209ENST00000473533 PRC1O43663 620 aa7.04□□□□□ -1.28
HERC4-209ENST00000473533 EIF3JO75822 258 aaKnown RBP7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms