RNA–Protein interactions for RNA: ENST00000470232.1

SYNGAP1-205, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 3

Gene SYNGAP1, Length 394 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-205ENST00000470232 CEP290O15078 2479 aa11.48□□□□□ -0.57
SYNGAP1-205ENST00000470232 TMPOP42166 694 aaKnown RBP11.48□□□□□ -0.57
SYNGAP1-205ENST00000470232 CLMNQ96JQ2 1002 aa11.48□□□□□ -0.57
SYNGAP1-205ENST00000470232 MYD88Q99836 296 aa11.48□□□□□ -0.57
SYNGAP1-205ENST00000470232 TRIOBPQ9H2D6 2365 aa11.48□□□□□ -0.57
SYNGAP1-205ENST00000470232 A0A0C4DFX4 3053 aa11.48□□□□□ -0.57
SYNGAP1-205ENST00000470232 GNRH1P01148 92 aa11.47□□□□□ -0.57
SYNGAP1-205ENST00000470232 PRMT2P55345 433 aa11.47□□□□□ -0.57
SYNGAP1-205ENST00000470232 GTF2IP78347 998 aa11.47□□□□□ -0.57
SYNGAP1-205ENST00000470232 TAF1CQ15572 869 aaPredicted RBP11.47□□□□□ -0.57
SYNGAP1-205ENST00000470232 MTMR14Q8NCE2 650 aa11.47□□□□□ -0.57
SYNGAP1-205ENST00000470232 NKX2-3Q8TAU0 364 aa11.47□□□□□ -0.57
SYNGAP1-205ENST00000470232 ZBED3Q96IU2 234 aaPredicted RBP11.47□□□□□ -0.57
SYNGAP1-205ENST00000470232 HTATIP2Q9BUP3 242 aa11.47□□□□□ -0.57
SYNGAP1-205ENST00000470232 CHMP4AQ9BY43 222 aa11.47□□□□□ -0.57
SYNGAP1-205ENST00000470232 ANKRD2Q9GZV1 360 aa11.47□□□□□ -0.57
SYNGAP1-205ENST00000470232 RBM27Q9P2N5 1060 aaKnown RBP11.47□□□□□ -0.57
SYNGAP1-205ENST00000470232 FZD1Q9UP38 647 aa11.47□□□□□ -0.57
SYNGAP1-205ENST00000470232 NR2E3Q9Y5X4 410 aa11.47□□□□□ -0.57
SYNGAP1-205ENST00000470232 PTCH2Q9Y6C5 1203 aa11.47□□□□□ -0.57
SYNGAP1-205ENST00000470232 COL4A1P02462 1669 aa11.46□□□□□ -0.57
SYNGAP1-205ENST00000470232 USP2O75604 605 aaPredicted RBP11.46□□□□□ -0.57
SYNGAP1-205ENST00000470232 DDX58O95786 925 aaKnown RBP11.46□□□□□ -0.57
SYNGAP1-205ENST00000470232 IGHMBP2P38935 993 aaKnown RBP11.46□□□□□ -0.57
SYNGAP1-205ENST00000470232 GTF2A2P52657 109 aa11.46□□□□□ -0.57
SYNGAP1-205ENST00000470232 KRT24Q2M2I5 525 aa11.46□□□□□ -0.57
SYNGAP1-205ENST00000470232 PTPN18Q99952 460 aa11.46□□□□□ -0.57
SYNGAP1-205ENST00000470232 ZNF804BA4D1E1 1349 aa11.45□□□□□ -0.58
SYNGAP1-205ENST00000470232 MYCP01106 439 aaPredicted RBP11.45□□□□□ -0.58
SYNGAP1-205ENST00000470232 KCNJ4P48050 445 aa11.45□□□□□ -0.58
SYNGAP1-205ENST00000470232 DDX10Q13206 875 aaKnown RBP11.45□□□□□ -0.58
SYNGAP1-205ENST00000470232 TNFAIP1Q13829 316 aa11.45□□□□□ -0.58
SYNGAP1-205ENST00000470232 NEUROD2Q15784 382 aa11.45□□□□□ -0.58
SYNGAP1-205ENST00000470232 OPTNQ96CV9 577 aa11.45□□□□□ -0.58
SYNGAP1-205ENST00000470232 VEZTQ9HBM0 779 aa11.45□□□□□ -0.58
SYNGAP1-205ENST00000470232 A0A1W2PPC1 479 aa11.44□□□□□ -0.58
SYNGAP1-205ENST00000470232 GJA5P36382 358 aa11.44□□□□□ -0.58
SYNGAP1-205ENST00000470232 MNX1P50219 401 aaPredicted RBP11.44□□□□□ -0.58
SYNGAP1-205ENST00000470232 CTSWP56202 376 aa11.44□□□□□ -0.58
SYNGAP1-205ENST00000470232 NBPF12Q5TAG4 269 aaPredicted RBP11.44□□□□□ -0.58
SYNGAP1-205ENST00000470232 DUSP27Q5VZP5 1158 aa11.44□□□□□ -0.58
SYNGAP1-205ENST00000470232 TTLL11Q8NHH1 800 aa11.44□□□□□ -0.58
SYNGAP1-205ENST00000470232 LAMB1P07942 1786 aa11.44□□□□□ -0.58
SYNGAP1-205ENST00000470232 CCL15-CCL14A0A0B4J2E2 113 aa11.43□□□□□ -0.58
SYNGAP1-205ENST00000470232 WTIPA6NIX2 430 aaPredicted RBP11.43□□□□□ -0.58
SYNGAP1-205ENST00000470232 HOXD10P28358 340 aa11.43□□□□□ -0.58
SYNGAP1-205ENST00000470232 RBM5P52756 815 aaKnown RBP eCLIP11.43□□□□□ -0.58
SYNGAP1-205ENST00000470232 CCL15Q16663 113 aa11.43□□□□□ -0.58
SYNGAP1-205ENST00000470232 CFAP100Q494V2 611 aa11.43□□□□□ -0.58
SYNGAP1-205ENST00000470232 TXNRD3Q86VQ6 643 aa11.43□□□□□ -0.58
SYNGAP1-205ENST00000470232 SH3TC2Q8TF17 1288 aa11.43□□□□□ -0.58
SYNGAP1-205ENST00000470232 JARID2Q92833 1246 aaPredicted RBP11.43□□□□□ -0.58
SYNGAP1-205ENST00000470232 MS4A4AQ96JQ5 239 aa11.43□□□□□ -0.58
SYNGAP1-205ENST00000470232 MPHOSPH8Q99549 860 aa11.43□□□□□ -0.58
SYNGAP1-205ENST00000470232 METTL22Q9BUU2 404 aaPredicted RBP11.43□□□□□ -0.58
SYNGAP1-205ENST00000470232 ELP3Q9H9T3 547 aa11.43□□□□□ -0.58
SYNGAP1-205ENST00000470232 CD209Q9NNX6 404 aa11.43□□□□□ -0.58
SYNGAP1-205ENST00000470232 CLRN2A0PK11 232 aa11.42□□□□□ -0.58
SYNGAP1-205ENST00000470232 TLR2O60603 784 aa11.42□□□□□ -0.58
SYNGAP1-205ENST00000470232 FKBP1AP62942 108 aaKnown RBP11.42□□□□□ -0.58
SYNGAP1-205ENST00000470232 MAP3K9P80192 1104 aa11.42□□□□□ -0.58
SYNGAP1-205ENST00000470232 NEXNQ0ZGT2 675 aa11.42□□□□□ -0.58
SYNGAP1-205ENST00000470232 RASA3Q14644 834 aa11.42□□□□□ -0.58
SYNGAP1-205ENST00000470232 HELBQ8NG08 1087 aaPredicted RBP11.42□□□□□ -0.58
SYNGAP1-205ENST00000470232 GREM2Q9H772 168 aa11.42□□□□□ -0.58
SYNGAP1-205ENST00000470232 PHAXQ9H814 394 aaKnown RBP11.42□□□□□ -0.58
SYNGAP1-205ENST00000470232 ZCCHC17Q9NP64 241 aaKnown RBP11.42□□□□□ -0.58
SYNGAP1-205ENST00000470232 CSADQ9Y600 493 aa11.42□□□□□ -0.58
SYNGAP1-205ENST00000470232 COL6A3P12111 3177 aa11.42□□□□□ -0.58
SYNGAP1-205ENST00000470232 RANBP2P49792 3224 aaKnown RBP11.41□□□□□ -0.58
SYNGAP1-205ENST00000470232 SPDYE2BA6NHP3 402 aa11.41□□□□□ -0.58
SYNGAP1-205ENST00000470232 SPDYE6P0CI01 402 aa11.41□□□□□ -0.58
SYNGAP1-205ENST00000470232 CETPP11597 493 aa11.41□□□□□ -0.58
SYNGAP1-205ENST00000470232 CAPN2P17655 700 aa11.41□□□□□ -0.58
SYNGAP1-205ENST00000470232 LACTBP83111 547 aaPredicted RBP11.41□□□□□ -0.58
SYNGAP1-205ENST00000470232 CAP1Q01518 475 aa11.41□□□□□ -0.58
SYNGAP1-205ENST00000470232 BRI3BPQ8WY22 251 aa11.41□□□□□ -0.58
SYNGAP1-205ENST00000470232 PRMT6Q96LA8 375 aaPredicted RBP11.41□□□□□ -0.58
SYNGAP1-205ENST00000470232 F8W031 263 aaPredicted RBP11.4□□□□□ -0.58
SYNGAP1-205ENST00000470232 TNNI2P48788 182 aa11.4□□□□□ -0.58
SYNGAP1-205ENST00000470232 UBXN2AP68543 259 aa11.4□□□□□ -0.58
SYNGAP1-205ENST00000470232 ZNF804AQ7Z570 1209 aa11.4□□□□□ -0.58
SYNGAP1-205ENST00000470232 RAET1EQ8TD07 263 aa11.4□□□□□ -0.58
SYNGAP1-205ENST00000470232 TRIM47Q96LD4 638 aa11.4□□□□□ -0.58
SYNGAP1-205ENST00000470232 SSC5DA1L4H1 1573 aa11.4□□□□□ -0.58
SYNGAP1-205ENST00000470232 ECM29Q5VYK3 1845 aa11.39□□□□□ -0.59
SYNGAP1-205ENST00000470232 ANP32CO43423 234 aa11.39□□□□□ -0.59
SYNGAP1-205ENST00000470232 GJB1P08034 283 aa11.39□□□□□ -0.59
SYNGAP1-205ENST00000470232 GJA8P48165 433 aa11.39□□□□□ -0.59
SYNGAP1-205ENST00000470232 CCDC30Q5VVM6 783 aa11.39□□□□□ -0.59
SYNGAP1-205ENST00000470232 RUNDC1Q96C34 613 aa11.39□□□□□ -0.59
SYNGAP1-205ENST00000470232 PRO3102Q9H379 93 aa11.39□□□□□ -0.59
SYNGAP1-205ENST00000470232 BIN2Q9UBW5 565 aaPredicted RBP11.39□□□□□ -0.59
SYNGAP1-205ENST00000470232 TRIM35Q9UPQ4 493 aa11.39□□□□□ -0.59
SYNGAP1-205ENST00000470232 MAP3K2Q9Y2U5 619 aa11.39□□□□□ -0.59
SYNGAP1-205ENST00000470232 SUPT16HQ9Y5B9 1047 aaKnown RBP11.39□□□□□ -0.59
SYNGAP1-205ENST00000470232 ZNF646O15015 1829 aaPredicted RBP11.38□□□□□ -0.59
SYNGAP1-205ENST00000470232 CCER2I3L3R5 266 aa11.38□□□□□ -0.59
SYNGAP1-205ENST00000470232 ZBTB7BO15156 539 aaPredicted RBP11.38□□□□□ -0.59
SYNGAP1-205ENST00000470232 IL1R1P14778 569 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms