RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 PCDHGC4Q9Y5F7 938 aa5.57□□□□□ -1.52
TMEM39A-204ENST00000468545 MED14O60244 1454 aa5.57□□□□□ -1.52
TMEM39A-204ENST00000468545 FAM181BA6NEQ2 426 aa5.56□□□□□ -1.52
TMEM39A-204ENST00000468545 MICAL2O94851 1124 aa5.56□□□□□ -1.52
TMEM39A-204ENST00000468545 MPSTP25325 297 aa5.56□□□□□ -1.52
TMEM39A-204ENST00000468545 FAM26DQ5JW98 314 aa5.56□□□□□ -1.52
TMEM39A-204ENST00000468545 VWA5B2Q8N398 1253 aa5.56□□□□□ -1.52
TMEM39A-204ENST00000468545 TRERF1Q96PN7 1200 aa5.56□□□□□ -1.52
TMEM39A-204ENST00000468545 SLC12A5Q9H2X9 1139 aa5.56□□□□□ -1.52
TMEM39A-204ENST00000468545 PANK3Q9H999 370 aa5.56□□□□□ -1.52
TMEM39A-204ENST00000468545 NDFIP2Q9NV92 336 aa5.56□□□□□ -1.52
TMEM39A-204ENST00000468545 ATXN7L1Q9ULK2 861 aaPredicted RBP5.56□□□□□ -1.52
TMEM39A-204ENST00000468545 PHF24Q9UPV7 400 aa5.56□□□□□ -1.52
TMEM39A-204ENST00000468545 LAMC1P11047 1609 aa5.56□□□□□ -1.52
TMEM39A-204ENST00000468545 ZNF335Q9H4Z2 1342 aaPredicted RBP5.55□□□□□ -1.52
TMEM39A-204ENST00000468545 DCDC2BA2VCK2 349 aa5.55□□□□□ -1.52
TMEM39A-204ENST00000468545 EFSO43281 561 aa5.55□□□□□ -1.52
TMEM39A-204ENST00000468545 BNIP3LO60238 219 aa5.55□□□□□ -1.52
TMEM39A-204ENST00000468545 EPB42P16452 691 aa5.55□□□□□ -1.52
TMEM39A-204ENST00000468545 INPP5BP32019 993 aa5.55□□□□□ -1.52
TMEM39A-204ENST00000468545 ZAP70P43403 619 aa5.55□□□□□ -1.52
TMEM39A-204ENST00000468545 IDH3AP50213 366 aa5.55□□□□□ -1.52
TMEM39A-204ENST00000468545 ARSDP51689 593 aa5.55□□□□□ -1.52
TMEM39A-204ENST00000468545 LAMC2Q13753 1193 aa5.55□□□□□ -1.52
TMEM39A-204ENST00000468545 NOM1Q5C9Z4 860 aaKnown RBP5.55□□□□□ -1.52
TMEM39A-204ENST00000468545 ALKBH2Q6NS38 261 aa5.55□□□□□ -1.52
TMEM39A-204ENST00000468545 NUDT16Q96DE0 195 aaKnown RBP5.55□□□□□ -1.52
TMEM39A-204ENST00000468545 CEP63Q96MT8 703 aa5.55□□□□□ -1.52
TMEM39A-204ENST00000468545 CFHR5Q9BXR6 569 aa5.55□□□□□ -1.52
TMEM39A-204ENST00000468545 BRD7Q9NPI1 651 aa5.55□□□□□ -1.52
TMEM39A-204ENST00000468545 FAM13BQ9NYF5 915 aa5.55□□□□□ -1.52
TMEM39A-204ENST00000468545 PIK3R4Q99570 1358 aa5.55□□□□□ -1.52
TMEM39A-204ENST00000468545 POLR1AO95602 1720 aaPredicted RBP5.54□□□□□ -1.52
TMEM39A-204ENST00000468545 KHNYNO15037 678 aaKnown RBP5.54□□□□□ -1.52
TMEM39A-204ENST00000468545 ZBTB39O15060 712 aa5.54□□□□□ -1.52
TMEM39A-204ENST00000468545 ANP32CO43423 234 aa5.54□□□□□ -1.52
TMEM39A-204ENST00000468545 MAPTP10636 758 aaKnown RBP5.54□□□□□ -1.52
TMEM39A-204ENST00000468545 EIF1AXP47813 144 aaKnown RBP5.54□□□□□ -1.52
TMEM39A-204ENST00000468545 KCNQ4P56696 695 aa5.54□□□□□ -1.52
TMEM39A-204ENST00000468545 TNP2Q05952 138 aa5.54□□□□□ -1.52
TMEM39A-204ENST00000468545 SND1Q7KZF4 910 aaKnown RBP eCLIP5.54□□□□□ -1.528e-8■■■□□ 16.8
TMEM39A-204ENST00000468545 PMFBP1Q8TBY8 1022 aa5.54□□□□□ -1.52
TMEM39A-204ENST00000468545 ABHD17AQ96GS6 310 aa5.54□□□□□ -1.52
TMEM39A-204ENST00000468545 FAM135BQ49AJ0 1406 aa5.54□□□□□ -1.52
TMEM39A-204ENST00000468545 SETD1AO15047 1707 aaKnown RBP5.54□□□□□ -1.52
TMEM39A-204ENST00000468545 QRICH2Q9H0J4 1663 aa5.53□□□□□ -1.52
TMEM39A-204ENST00000468545 STRCQ7RTU9 1775 aa5.53□□□□□ -1.52
TMEM39A-204ENST00000468545 GPR25O00155 361 aa5.53□□□□□ -1.52
TMEM39A-204ENST00000468545 ATF3P18847 181 aa5.53□□□□□ -1.52
TMEM39A-204ENST00000468545 ARHGAP4P98171 946 aa5.53□□□□□ -1.52
TMEM39A-204ENST00000468545 ECM1Q16610 540 aa5.53□□□□□ -1.52
TMEM39A-204ENST00000468545 CC2D1BQ5T0F9 858 aaKnown RBP5.53□□□□□ -1.52
TMEM39A-204ENST00000468545 HDGFL2Q7Z4V5 671 aaPredicted RBP5.53□□□□□ -1.52
TMEM39A-204ENST00000468545 GPR161Q8N6U8 529 aaKnown RBP5.53□□□□□ -1.52
TMEM39A-204ENST00000468545 BIN2Q9UBW5 565 aaPredicted RBP5.53□□□□□ -1.52
TMEM39A-204ENST00000468545 KNSTRNQ9Y448 316 aa5.53□□□□□ -1.52
TMEM39A-204ENST00000468545 DIP2AQ14689 1571 aa5.53□□□□□ -1.52
TMEM39A-204ENST00000468545 ARHGEF28Q8N1W1 1705 aaKnown RBP5.53□□□□□ -1.52
TMEM39A-204ENST00000468545 TMEM94Q12767 1356 aa5.53□□□□□ -1.52
TMEM39A-204ENST00000468545 DLC1Q96QB1 1528 aa5.53□□□□□ -1.52
TMEM39A-204ENST00000468545 TECPR2O15040 1411 aa5.52□□□□□ -1.53
TMEM39A-204ENST00000468545 OPLAHO14841 1288 aa5.52□□□□□ -1.53
TMEM39A-204ENST00000468545 FGFR3P22607 806 aa5.52□□□□□ -1.53
TMEM39A-204ENST00000468545 FAM182BQ5T319 152 aa5.52□□□□□ -1.53
TMEM39A-204ENST00000468545 ATCAYQ86WG3 371 aa5.52□□□□□ -1.53
TMEM39A-204ENST00000468545 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.52□□□□□ -1.53
TMEM39A-204ENST00000468545 NGDNQ8NEJ9 315 aaKnown RBP5.52□□□□□ -1.53
TMEM39A-204ENST00000468545 PUS7Q96PZ0 661 aaKnown RBP5.52□□□□□ -1.53
TMEM39A-204ENST00000468545 GZF1Q9H116 711 aaPredicted RBP5.52□□□□□ -1.53
TMEM39A-204ENST00000468545 C19orf44Q9H6X5 657 aa5.52□□□□□ -1.53
TMEM39A-204ENST00000468545 TERF2IPQ9NYB0 399 aa5.52□□□□□ -1.53
TMEM39A-204ENST00000468545 KCNH4Q9UQ05 1017 aa5.52□□□□□ -1.53
TMEM39A-204ENST00000468545 CHD2O14647 1828 aaKnown RBP5.52□□□□□ -1.53
TMEM39A-204ENST00000468545 PRR36Q9H6K5 1346 aa5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 PTCH1Q13635 1447 aa5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 MZF1P28698 734 aaPredicted RBP5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 GRNP28799 593 aaKnown RBP5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 KRT76Q01546 638 aa5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 SFSWAPQ12872 951 aaKnown RBP5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 AAMPQ13685 434 aa5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 GAS6Q14393 721 aa5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 RGL4Q8IZJ4 473 aa5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 GPR152Q8TDT2 470 aa5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 PIK3R5Q8WYR1 880 aa5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 CNTNAP3BQ96NU0 1288 aa5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 ORAI2Q96SN7 254 aa5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 CNTNAP3Q9BZ76 1288 aa5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 C11orf16Q9NQ32 467 aa5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 STRN4Q9NRL3 753 aa5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 MARK1Q9P0L2 795 aa5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 RTCBQ9Y3I0 505 aaKnown RBP5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 CPS1P31327 1500 aa5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 TULP4Q9NRJ4 1543 aa5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 SBNO2Q9Y2G9 1366 aa5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.51□□□□□ -1.53
TMEM39A-204ENST00000468545 ACEP12821 1306 aa5.5□□□□□ -1.53
TMEM39A-204ENST00000468545 PPIP5K1Q6PFW1 1433 aa5.5□□□□□ -1.53
TMEM39A-204ENST00000468545 NDUFB5O43674 189 aa5.5□□□□□ -1.53
TMEM39A-204ENST00000468545 FZD6O60353 706 aa5.5□□□□□ -1.53
TMEM39A-204ENST00000468545 PDGFAP04085 211 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms