RNA–Protein interactions for RNA: ENST00000466732.2

VPS13D-203, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 377 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-203ENST00000466732 EHD4Q9H223 541 aa7.23□□□□□ -1.25
VPS13D-203ENST00000466732 OSGEPQ9NPF4 335 aa7.23□□□□□ -1.25
VPS13D-203ENST00000466732 TPSG1Q9NRR2 321 aa7.23□□□□□ -1.25
VPS13D-203ENST00000466732 A0A096LPE4 126 aa7.22□□□□□ -1.25
VPS13D-203ENST00000466732 A0A1W2PPZ6 126 aa7.22□□□□□ -1.25
VPS13D-203ENST00000466732 F8W735 103 aaPredicted RBP7.22□□□□□ -1.25
VPS13D-203ENST00000466732 SOX1O00570 391 aaPredicted RBP7.22□□□□□ -1.25
VPS13D-203ENST00000466732 DDX3YO15523 660 aaKnown RBP7.22□□□□□ -1.25
VPS13D-203ENST00000466732 ADAM11O75078 769 aa7.22□□□□□ -1.25
VPS13D-203ENST00000466732 ALX3O95076 343 aa7.22□□□□□ -1.25
VPS13D-203ENST00000466732 WISP1O95388 367 aa7.22□□□□□ -1.25
VPS13D-203ENST00000466732 IKBKEQ14164 716 aa7.22□□□□□ -1.25
VPS13D-203ENST00000466732 SUZ12Q15022 739 aaKnown RBP7.22□□□□□ -1.25
VPS13D-203ENST00000466732 SPRED3Q2MJR0 410 aa7.22□□□□□ -1.25
VPS13D-203ENST00000466732 HGSNATQ68CP4 663 aa7.22□□□□□ -1.25
VPS13D-203ENST00000466732 SND1Q7KZF4 910 aaKnown RBP eCLIP7.22□□□□□ -1.25
VPS13D-203ENST00000466732 EPS8L3Q8TE67 593 aaKnown RBP7.22□□□□□ -1.25
VPS13D-203ENST00000466732 AKTIPQ9H8T0 292 aa7.22□□□□□ -1.25
VPS13D-203ENST00000466732 PNMA6FA0A0J9YX94 578 aa7.21□□□□□ -1.26
VPS13D-203ENST00000466732 GADD45BO75293 160 aaPredicted RBP7.21□□□□□ -1.26
VPS13D-203ENST00000466732 ARL4DP49703 201 aa7.21□□□□□ -1.26
VPS13D-203ENST00000466732 C19orf57Q0VDD7 668 aa7.21□□□□□ -1.26
VPS13D-203ENST00000466732 ENOX2Q16206 610 aaKnown RBP7.21□□□□□ -1.26
VPS13D-203ENST00000466732 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.21□□□□□ -1.26
VPS13D-203ENST00000466732 FOXD4L4Q8WXT5 416 aaPredicted RBP7.21□□□□□ -1.26
VPS13D-203ENST00000466732 SSBP4Q9BWG4 385 aaPredicted RBP7.21□□□□□ -1.26
VPS13D-203ENST00000466732 ESRRAP11474 423 aaPredicted RBP7.2□□□□□ -1.26
VPS13D-203ENST00000466732 FMR1Q06787 632 aaKnown RBP eCLIP7.2□□□□□ -1.26
VPS13D-203ENST00000466732 PI16Q6UXB8 463 aa7.2□□□□□ -1.26
VPS13D-203ENST00000466732 ACAD11Q709F0 780 aa7.2□□□□□ -1.26
VPS13D-203ENST00000466732 AGGF1Q8N302 714 aaeCLIP7.2□□□□□ -1.26
VPS13D-203ENST00000466732 UBASH3BQ8TF42 649 aa7.2□□□□□ -1.26
VPS13D-203ENST00000466732 MAPK8P45983 427 aa7.19□□□□□ -1.26
VPS13D-203ENST00000466732 NLRP12P59046 1061 aa7.19□□□□□ -1.26
VPS13D-203ENST00000466732 PCDH1Q08174 1060 aa7.19□□□□□ -1.26
VPS13D-203ENST00000466732 GRM2Q14416 872 aa7.19□□□□□ -1.26
VPS13D-203ENST00000466732 DUOXA2Q1HG44 320 aa7.19□□□□□ -1.26
VPS13D-203ENST00000466732 RSPO4Q2I0M5 234 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-203ENST00000466732 PRPF40BQ6NWY9 871 aaKnown RBP7.19□□□□□ -1.26
VPS13D-203ENST00000466732 GLIS3Q8NEA6 775 aa7.19□□□□□ -1.26
VPS13D-203ENST00000466732 TP53INP1Q96A56 240 aa7.19□□□□□ -1.26
VPS13D-203ENST00000466732 MEGF10Q96KG7 1140 aa7.19□□□□□ -1.26
VPS13D-203ENST00000466732 CLEC4MQ9H2X3 399 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-203ENST00000466732 SOX17Q9H6I2 414 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-203ENST00000466732 ABCB6Q9NP58 842 aa7.19□□□□□ -1.26
VPS13D-203ENST00000466732 K7ELQ4 463 aaPredicted RBP7.18□□□□□ -1.26
VPS13D-203ENST00000466732 ADAM23O75077 832 aa7.18□□□□□ -1.26
VPS13D-203ENST00000466732 ITPKAP23677 461 aa7.18□□□□□ -1.26
VPS13D-203ENST00000466732 ZNF423Q2M1K9 1284 aa7.18□□□□□ -1.26
VPS13D-203ENST00000466732 NKAPLQ5M9Q1 402 aa7.18□□□□□ -1.26
VPS13D-203ENST00000466732 Q6ZS46 218 aa7.18□□□□□ -1.26
VPS13D-203ENST00000466732 KIAA1211Q6ZU35 1233 aa7.18□□□□□ -1.26
VPS13D-203ENST00000466732 ZNF576Q9H609 170 aa7.18□□□□□ -1.26
VPS13D-203ENST00000466732 NLRP2Q9NX02 1062 aa7.18□□□□□ -1.26
VPS13D-203ENST00000466732 TRAK1Q9UPV9 953 aa7.18□□□□□ -1.26
VPS13D-203ENST00000466732 TMEM238LA0A1B0GVL6 79 aa7.17□□□□□ -1.26
VPS13D-203ENST00000466732 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.17□□□□□ -1.26
VPS13D-203ENST00000466732 DZIP1LQ8IYY4 767 aaKnown RBP7.17□□□□□ -1.26
VPS13D-203ENST00000466732 SETDB2Q96T68 719 aa7.17□□□□□ -1.26
VPS13D-203ENST00000466732 GLB1P16278 677 aa7.16□□□□□ -1.26
VPS13D-203ENST00000466732 GSTM4Q03013 218 aa7.16□□□□□ -1.26
VPS13D-203ENST00000466732 PTPN12Q05209 780 aaKnown RBP7.16□□□□□ -1.26
VPS13D-203ENST00000466732 BCO2Q9BYV7 579 aa7.16□□□□□ -1.26
VPS13D-203ENST00000466732 SEMA6BQ9H3T3 888 aa7.16□□□□□ -1.26
VPS13D-203ENST00000466732 WWC3Q9ULE0 1092 aa7.16□□□□□ -1.26
VPS13D-203ENST00000466732 B3GALT4O96024 378 aa7.15□□□□□ -1.26
VPS13D-203ENST00000466732 P4HBP07237 508 aaKnown RBP7.15□□□□□ -1.26
VPS13D-203ENST00000466732 FBF1Q8TES7 1133 aa7.15□□□□□ -1.26
VPS13D-203ENST00000466732 UBL7Q96S82 380 aaPredicted RBP7.15□□□□□ -1.26
VPS13D-203ENST00000466732 USP26Q9BXU7 913 aa7.15□□□□□ -1.26
VPS13D-203ENST00000466732 LOC100289279A0A1B0GTE1 492 aa7.14□□□□□ -1.27
VPS13D-203ENST00000466732 DYRK3O43781 588 aa7.14□□□□□ -1.27
VPS13D-203ENST00000466732 H2AFB1P0C5Y9 115 aa7.14□□□□□ -1.27
VPS13D-203ENST00000466732 H2AFB2P0C5Z0 115 aa7.14□□□□□ -1.27
VPS13D-203ENST00000466732 FCGRTP55899 365 aa7.14□□□□□ -1.27
VPS13D-203ENST00000466732 ALG1LQ6GMV1 187 aa7.14□□□□□ -1.27
VPS13D-203ENST00000466732 NXPE4Q6UWF7 544 aa7.14□□□□□ -1.27
VPS13D-203ENST00000466732 RUSC1Q9BVN2 902 aa7.14□□□□□ -1.27
VPS13D-203ENST00000466732 NRSN2Q9GZP1 204 aa7.14□□□□□ -1.27
VPS13D-203ENST00000466732 RNF208Q9H0X6 261 aa7.14□□□□□ -1.27
VPS13D-203ENST00000466732 GZF1Q9H116 711 aaPredicted RBP7.14□□□□□ -1.27
VPS13D-203ENST00000466732 PPP4R2Q9NY27 417 aa7.14□□□□□ -1.27
VPS13D-203ENST00000466732 ANKRD33BA6NCL7 494 aa7.13□□□□□ -1.27
VPS13D-203ENST00000466732 EIF4EBP3O60516 100 aaPredicted RBP7.13□□□□□ -1.27
VPS13D-203ENST00000466732 ATP2B2Q01814 1243 aa7.13□□□□□ -1.27
VPS13D-203ENST00000466732 RPS26P11Q5JNZ5 115 aaPredicted RBP7.13□□□□□ -1.27
VPS13D-203ENST00000466732 DTHD1Q6ZMT9 781 aa7.13□□□□□ -1.27
VPS13D-203ENST00000466732 CEP41Q9BYV8 373 aa7.13□□□□□ -1.27
VPS13D-203ENST00000466732 MEGF11A6BM72 1044 aa7.12□□□□□ -1.27
VPS13D-203ENST00000466732 DLGAP3O95886 979 aa7.12□□□□□ -1.27
VPS13D-203ENST00000466732 LDHBP07195 334 aaKnown RBP7.12□□□□□ -1.27
VPS13D-203ENST00000466732 ITGB7P26010 798 aa7.12□□□□□ -1.27
VPS13D-203ENST00000466732 FAAP100Q0VG06 881 aa7.12□□□□□ -1.27
VPS13D-203ENST00000466732 XRCC5P13010 732 aaKnown RBP7.11□□□□□ -1.27
VPS13D-203ENST00000466732 COL19A1Q14993 1142 aa7.11□□□□□ -1.27
VPS13D-203ENST00000466732 DNAJC14Q6Y2X3 702 aaPredicted RBP7.11□□□□□ -1.27
VPS13D-203ENST00000466732 ARMC10Q8N2F6 343 aa7.11□□□□□ -1.27
VPS13D-203ENST00000466732 DDX54Q8TDD1 881 aaKnown RBP7.11□□□□□ -1.27
VPS13D-203ENST00000466732 FAM46AQ96IP4 442 aaKnown RBP7.11□□□□□ -1.27
VPS13D-203ENST00000466732 TRIM56Q9BRZ2 755 aaKnown RBP7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms