RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 CENPHQ9H3R5 247 aa7.14□□□□□ -1.27
VPS13D-202ENST00000460333 QTRT2Q9H974 415 aaKnown RBP7.14□□□□□ -1.27
VPS13D-202ENST00000460333 PDE8AO60658 829 aa7.14□□□□□ -1.27
VPS13D-202ENST00000460333 UQCRFS1P1P0C7P4 283 aa7.14□□□□□ -1.27
VPS13D-202ENST00000460333 HCLS1P14317 486 aaPredicted RBP7.14□□□□□ -1.27
VPS13D-202ENST00000460333 TICAM2Q86XR7 235 aa7.14□□□□□ -1.27
VPS13D-202ENST00000460333 LIMCH1Q9UPQ0 1083 aa7.14□□□□□ -1.27
VPS13D-202ENST00000460333 GOLGA6L10A0A0M3HER8 536 aa7.13□□□□□ -1.27
VPS13D-202ENST00000460333 CIAO1O76071 339 aa7.13□□□□□ -1.27
VPS13D-202ENST00000460333 SSR1P43307 286 aaKnown RBP7.13□□□□□ -1.27
VPS13D-202ENST00000460333 FKBP4Q02790 459 aaKnown RBP eCLIP7.13□□□□□ -1.27
VPS13D-202ENST00000460333 CCDC181Q5TID7 509 aa7.13□□□□□ -1.27
VPS13D-202ENST00000460333 JAKMIP1Q96N16 626 aaKnown RBP7.13□□□□□ -1.27
VPS13D-202ENST00000460333 CAMTA1Q9Y6Y1 1673 aa7.13□□□□□ -1.27
VPS13D-202ENST00000460333 SGSM2O43147 1006 aa7.13□□□□□ -1.27
VPS13D-202ENST00000460333 HMGB1P09429 215 aaKnown RBP7.13□□□□□ -1.27
VPS13D-202ENST00000460333 ATP5JP18859 108 aa7.13□□□□□ -1.27
VPS13D-202ENST00000460333 PLCD3Q8N3E9 789 aa7.13□□□□□ -1.27
VPS13D-202ENST00000460333 RBSNQ9H1K0 784 aa7.13□□□□□ -1.27
VPS13D-202ENST00000460333 JCADQ9P266 1359 aa7.13□□□□□ -1.27
VPS13D-202ENST00000460333 NAP1L1P55209 391 aaKnown RBP7.13□□□□□ -1.27
VPS13D-202ENST00000460333 TRIM28Q13263 835 aaKnown RBP7.13□□□□□ -1.27
VPS13D-202ENST00000460333 SH3TC1Q8TE82 1336 aa7.13□□□□□ -1.27
VPS13D-202ENST00000460333 PPM1EQ8WY54 764 aa7.13□□□□□ -1.27
VPS13D-202ENST00000460333 MYCBPQ99417 103 aaPredicted RBP7.13□□□□□ -1.27
VPS13D-202ENST00000460333 PARP4Q9UKK3 1724 aaKnown RBP7.13□□□□□ -1.27
VPS13D-202ENST00000460333 SPATA31A1Q5TZJ5 1347 aa7.13□□□□□ -1.27
VPS13D-202ENST00000460333 STX6O43752 255 aa7.13□□□□□ -1.27
VPS13D-202ENST00000460333 ZNF165P49910 485 aa7.13□□□□□ -1.27
VPS13D-202ENST00000460333 SYCP1Q15431 976 aa7.13□□□□□ -1.27
VPS13D-202ENST00000460333 FAM98CQ17RN3 349 aaKnown RBP7.13□□□□□ -1.27
VPS13D-202ENST00000460333 PRPF40BQ6NWY9 871 aaKnown RBP7.13□□□□□ -1.27
VPS13D-202ENST00000460333 BARGINQ6ZT62 677 aa7.13□□□□□ -1.27
VPS13D-202ENST00000460333 NBPF11Q86T75 865 aa7.13□□□□□ -1.27
VPS13D-202ENST00000460333 CCDC85AQ96PX6 553 aaPredicted RBP7.13□□□□□ -1.27
VPS13D-202ENST00000460333 NYXQ9GZU5 481 aa7.13□□□□□ -1.27
VPS13D-202ENST00000460333 TTC12Q9H892 705 aaPredicted RBP7.13□□□□□ -1.27
VPS13D-202ENST00000460333 MAGEC2Q9UBF1 373 aaPredicted RBP7.13□□□□□ -1.27
VPS13D-202ENST00000460333 TOP1P11387 765 aaKnown RBP7.12□□□□□ -1.27
VPS13D-202ENST00000460333 CASTP20810 708 aaKnown RBP7.12□□□□□ -1.27
VPS13D-202ENST00000460333 ATP2B3Q16720 1220 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 RALYLQ86SE5 291 aaKnown RBP7.12□□□□□ -1.27
VPS13D-202ENST00000460333 DYDC1Q8WWB3 177 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 INTS4Q96HW7 963 aaKnown RBP7.12□□□□□ -1.27
VPS13D-202ENST00000460333 TFCP2L1Q9NZI6 479 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.12□□□□□ -1.27
VPS13D-202ENST00000460333 LOC102724428A0A0B4J2F2 783 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 RIOK3O14730 519 aaKnown RBP7.12□□□□□ -1.27
VPS13D-202ENST00000460333 ZSCAN22P10073 491 aaPredicted RBP7.12□□□□□ -1.27
VPS13D-202ENST00000460333 RFC4P35249 363 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 SIK1P57059 783 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 CFAP100Q494V2 611 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 CCDC186Q7Z3E2 898 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 FAM177A1Q8N128 213 aaPredicted RBP7.12□□□□□ -1.27
VPS13D-202ENST00000460333 NIP7Q9Y221 180 aaKnown RBP eCLIP7.12□□□□□ -1.27
VPS13D-202ENST00000460333 SKILP12757 684 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 MCMDC2Q4G0Z9 681 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 BICDL1Q6ZP65 573 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 EAF2Q96CJ1 260 aaPredicted RBP7.12□□□□□ -1.27
VPS13D-202ENST00000460333 FAM89AQ96GI7 184 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 ZNF830Q96NB3 372 aaPredicted RBP7.12□□□□□ -1.27
VPS13D-202ENST00000460333 EFCC1Q9HA90 598 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 TRMT1Q9NXH9 659 aaKnown RBP7.12□□□□□ -1.27
VPS13D-202ENST00000460333 USP42Q9H9J4 1324 aaKnown RBP7.12□□□□□ -1.27
VPS13D-202ENST00000460333 NBPF26B4DH59 902 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 XBP1P17861 261 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 U2AF2P26368 475 aaKnown RBP eCLIP7.12□□□□□ -1.275e-7■■■■□ 26.4
VPS13D-202ENST00000460333 CAMK4Q16566 473 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 KIF4BQ2VIQ3 1234 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 NBPF10Q6P3W6 841 aaKnown RBP7.12□□□□□ -1.27
VPS13D-202ENST00000460333 NBPF15Q8N660 670 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 PAG1Q9NWQ8 432 aa7.12□□□□□ -1.27
VPS13D-202ENST00000460333 SPATA31A6Q5VVP1 1343 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 TULP1O00294 542 aaPredicted RBP7.11□□□□□ -1.27
VPS13D-202ENST00000460333 GOLIM4O00461 696 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 CAPN2P17655 700 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 RABL6Q3YEC7 729 aaPredicted RBP7.11□□□□□ -1.27
VPS13D-202ENST00000460333 C10orf67Q8IYJ2 551 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 CEP112Q8N8E3 955 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 BRMS1Q9HCU9 246 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 NMIQ13287 307 aaPredicted RBP7.11□□□□□ -1.27
VPS13D-202ENST00000460333 KRBA2Q6ZNG9 492 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 KLHDC4Q8TBB5 520 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 GOLGA1Q92805 767 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 ISCA1Q9BUE6 129 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 BCL2L12Q9HB09 334 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 PTPN12Q05209 780 aaKnown RBP7.11□□□□□ -1.27
VPS13D-202ENST00000460333 SKIDA1Q1XH10 827 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 TMX3Q96JJ7 454 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 HELLSQ9NRZ9 838 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 RSPH14Q9UHP6 348 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 SPATA31A5Q5VU36 1347 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 SPATA31A7Q8IWB4 1347 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 A6NNZ2 444 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 CYP19A1P11511 503 aaPredicted RBP7.11□□□□□ -1.27
VPS13D-202ENST00000460333 EZRP15311 586 aaKnown RBP7.11□□□□□ -1.27
VPS13D-202ENST00000460333 ITGA6P23229 1130 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 HSPA4P34932 840 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 IMMTQ16891 758 aaKnown RBP7.11□□□□□ -1.27
VPS13D-202ENST00000460333 TUBB8Q3ZCM7 444 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms