RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 CNPY4Q8N129 248 aa7.34□□□□□ -1.23
VPS41-209ENST00000457055 NUDT16Q96DE0 195 aaKnown RBP7.34□□□□□ -1.23
VPS41-209ENST00000457055 UBL7Q96S82 380 aaPredicted RBP7.34□□□□□ -1.23
VPS41-209ENST00000457055 CEP41Q9BYV8 373 aa7.34□□□□□ -1.23
VPS41-209ENST00000457055 KCNK4Q9NYG8 393 aa7.34□□□□□ -1.23
VPS41-209ENST00000457055 TMEM63CQ9P1W3 806 aa7.34□□□□□ -1.23
VPS41-209ENST00000457055 SLAIN2Q9P270 581 aa7.34□□□□□ -1.23
VPS41-209ENST00000457055 SEPT3Q9UH03 358 aa7.34□□□□□ -1.23
VPS41-209ENST00000457055 FSCN2O14926 492 aa7.33□□□□□ -1.24
VPS41-209ENST00000457055 GSC2O15499 205 aa7.33□□□□□ -1.24
VPS41-209ENST00000457055 DHX15O43143 795 aaKnown RBP7.33□□□□□ -1.24
VPS41-209ENST00000457055 NEFMP07197 916 aa7.33□□□□□ -1.24
VPS41-209ENST00000457055 PTPRAP18433 802 aa7.33□□□□□ -1.24
VPS41-209ENST00000457055 EPHA1P21709 976 aa7.33□□□□□ -1.24
VPS41-209ENST00000457055 ATCAYQ86WG3 371 aa7.33□□□□□ -1.24
VPS41-209ENST00000457055 KLHL23Q8NBE8 558 aa7.33□□□□□ -1.24
VPS41-209ENST00000457055 CCDC97Q96F63 343 aaPredicted RBP7.33□□□□□ -1.24
VPS41-209ENST00000457055 ELP3Q9H9T3 547 aa7.33□□□□□ -1.24
VPS41-209ENST00000457055 KANSL3Q9P2N6 904 aa7.33□□□□□ -1.24
VPS41-209ENST00000457055 STOML1Q9UBI4 398 aa7.33□□□□□ -1.24
VPS41-209ENST00000457055 IGLV1-40P01703 118 aa7.32□□□□□ -1.24
VPS41-209ENST00000457055 DUOXA2Q1HG44 320 aa7.32□□□□□ -1.24
VPS41-209ENST00000457055 ARMC10Q8N2F6 343 aa7.32□□□□□ -1.24
VPS41-209ENST00000457055 CCDC82Q8N4S0 544 aa7.32□□□□□ -1.24
VPS41-209ENST00000457055 CEP120Q8N960 986 aa7.32□□□□□ -1.24
VPS41-209ENST00000457055 UTP4Q969X6 686 aaKnown RBP7.32□□□□□ -1.24
VPS41-209ENST00000457055 SH2B1Q9NRF2 756 aaPredicted RBP7.32□□□□□ -1.24
VPS41-209ENST00000457055 HMGXB3Q12766 1538 aa7.32□□□□□ -1.24
VPS41-209ENST00000457055 TM4SF5O14894 197 aa7.31□□□□□ -1.24
VPS41-209ENST00000457055 PTMAP06454 111 aaKnown RBP7.31□□□□□ -1.24
VPS41-209ENST00000457055 UVSSAQ2YD98 709 aa7.31□□□□□ -1.24
VPS41-209ENST00000457055 UBASH3BQ8TF42 649 aa7.31□□□□□ -1.24
VPS41-209ENST00000457055 POP1Q99575 1024 aaKnown RBP7.31□□□□□ -1.24
VPS41-209ENST00000457055 SEC31BQ9NQW1 1179 aa7.31□□□□□ -1.24
VPS41-209ENST00000457055 DDX3YO15523 660 aaKnown RBP7.3□□□□□ -1.24
VPS41-209ENST00000457055 RPLP1P05386 114 aaKnown RBP7.3□□□□□ -1.24
VPS41-209ENST00000457055 CD97P48960 835 aa7.3□□□□□ -1.24
VPS41-209ENST00000457055 CABP4P57796 275 aa7.3□□□□□ -1.24
VPS41-209ENST00000457055 HSP90AB4PQ58FF6 505 aa7.3□□□□□ -1.24
VPS41-209ENST00000457055 KIAA1211Q6ZU35 1233 aa7.3□□□□□ -1.24
VPS41-209ENST00000457055 GPATCH11Q8N954 259 aa7.3□□□□□ -1.24
VPS41-209ENST00000457055 HELQQ8TDG4 1101 aa7.3□□□□□ -1.24
VPS41-209ENST00000457055 EDEM1Q92611 657 aa7.3□□□□□ -1.24
VPS41-209ENST00000457055 DNAJC2Q99543 621 aaKnown RBP7.3□□□□□ -1.24
VPS41-209ENST00000457055 ADAM19Q9H013 955 aa7.3□□□□□ -1.24
VPS41-209ENST00000457055 CNTN3Q9P232 1028 aa7.3□□□□□ -1.24
VPS41-209ENST00000457055 H3BRJ5 948 aa7.29□□□□□ -1.24
VPS41-209ENST00000457055 ADAM11O75078 769 aa7.29□□□□□ -1.24
VPS41-209ENST00000457055 TGFB1P01137 390 aa7.29□□□□□ -1.24
VPS41-209ENST00000457055 ACPPP15309 386 aa7.29□□□□□ -1.24
VPS41-209ENST00000457055 PCSK2P16519 638 aa7.29□□□□□ -1.24
VPS41-209ENST00000457055 CES1P23141 567 aa7.29□□□□□ -1.24
VPS41-209ENST00000457055 DNM1Q05193 864 aaKnown RBP7.29□□□□□ -1.24
VPS41-209ENST00000457055 EXOC8Q8IYI6 725 aa7.29□□□□□ -1.24
VPS41-209ENST00000457055 KLHDC7BQ96G42 594 aa7.29□□□□□ -1.24
VPS41-209ENST00000457055 FAM46AQ96IP4 442 aaKnown RBP7.29□□□□□ -1.24
VPS41-209ENST00000457055 SERPINA10Q9UK55 444 aa7.29□□□□□ -1.24
VPS41-209ENST00000457055 PIP4K2BP78356 416 aa7.28□□□□□ -1.24
VPS41-209ENST00000457055 C1orf127Q8N9H9 656 aa7.28□□□□□ -1.24
VPS41-209ENST00000457055 TTC16Q8NEE8 873 aa7.28□□□□□ -1.24
VPS41-209ENST00000457055 MYRFLQ96LU7 910 aa7.28□□□□□ -1.24
VPS41-209ENST00000457055 C7orf69Q9H7B7 122 aa7.28□□□□□ -1.24
VPS41-209ENST00000457055 SALL4Q9UJQ4 1053 aa7.28□□□□□ -1.24
VPS41-209ENST00000457055 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.28□□□□□ -1.24
VPS41-209ENST00000457055 BAZ1BQ9UIG0 1483 aaKnown RBP7.28□□□□□ -1.24
VPS41-209ENST00000457055 A6NHS1 94 aa7.27□□□□□ -1.25
VPS41-209ENST00000457055 COBLO75128 1261 aa7.27□□□□□ -1.25
VPS41-209ENST00000457055 NFIAQ12857 509 aa7.27□□□□□ -1.25
VPS41-209ENST00000457055 C8orf34Q49A92 452 aa7.27□□□□□ -1.25
VPS41-209ENST00000457055 NOM1Q5C9Z4 860 aaKnown RBP7.27□□□□□ -1.25
VPS41-209ENST00000457055 MCTP1Q6DN14 999 aa7.27□□□□□ -1.25
VPS41-209ENST00000457055 XKR5Q6UX68 686 aa7.27□□□□□ -1.25
VPS41-209ENST00000457055 WNT8BQ93098 351 aa7.27□□□□□ -1.25
VPS41-209ENST00000457055 NAP1L2Q9ULW6 460 aaPredicted RBP7.27□□□□□ -1.25
VPS41-209ENST00000457055 SMARCA4P51532 1647 aa7.27□□□□□ -1.25
VPS41-209ENST00000457055 PDE2AO00408 941 aaPredicted RBP7.26□□□□□ -1.25
VPS41-209ENST00000457055 SART1O43290 800 aaKnown RBP7.26□□□□□ -1.25
VPS41-209ENST00000457055 PDGFAP04085 211 aa7.26□□□□□ -1.25
VPS41-209ENST00000457055 NLRP12P59046 1061 aa7.26□□□□□ -1.25
VPS41-209ENST00000457055 ZDHHC13Q8IUH4 622 aa7.26□□□□□ -1.25
VPS41-209ENST00000457055 TRIM42Q8IWZ5 723 aa7.26□□□□□ -1.25
VPS41-209ENST00000457055 SLC7A3Q8WY07 619 aa7.26□□□□□ -1.25
VPS41-209ENST00000457055 OSGEPQ9NPF4 335 aa7.26□□□□□ -1.25
VPS41-209ENST00000457055 DZANK1Q9NVP4 752 aa7.26□□□□□ -1.25
VPS41-209ENST00000457055 CHD1O14646 1710 aa7.25□□□□□ -1.25
VPS41-209ENST00000457055 HMX2A2RU54 273 aa7.25□□□□□ -1.25
VPS41-209ENST00000457055 PLEKHD1A6NEE1 506 aa7.25□□□□□ -1.25
VPS41-209ENST00000457055 KIAA1324LA8MWY0 1029 aaPredicted RBP7.25□□□□□ -1.25
VPS41-209ENST00000457055 NFKBIEO00221 500 aa7.25□□□□□ -1.25
VPS41-209ENST00000457055 TRPA1O75762 1119 aa7.25□□□□□ -1.25
VPS41-209ENST00000457055 MED26O95402 600 aa7.25□□□□□ -1.25
VPS41-209ENST00000457055 MPSTP25325 297 aa7.25□□□□□ -1.25
VPS41-209ENST00000457055 MZF1P28698 734 aaPredicted RBP7.25□□□□□ -1.25
VPS41-209ENST00000457055 EIF1AXP47813 144 aaKnown RBP7.25□□□□□ -1.25
VPS41-209ENST00000457055 RNF43Q68DV7 783 aa7.25□□□□□ -1.25
VPS41-209ENST00000457055 ANKRD34AQ69YU3 496 aa7.25□□□□□ -1.25
VPS41-209ENST00000457055 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.25□□□□□ -1.25
VPS41-209ENST00000457055 ANKRD13AQ8IZ07 590 aa7.25□□□□□ -1.25
VPS41-209ENST00000457055 IPO4Q8TEX9 1081 aaKnown RBP7.25□□□□□ -1.25
VPS41-209ENST00000457055 HHIPQ96QV1 700 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms