RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 ZKSCAN3Q9BRR0 538 aa7.2□□□□□ -1.26
USP40-209ENST00000452724 KCNK4Q9NYG8 393 aa7.2□□□□□ -1.26
USP40-209ENST00000452724 STOML1Q9UBI4 398 aa7.2□□□□□ -1.26
USP40-209ENST00000452724 BRPF3Q9ULD4 1205 aa7.2□□□□□ -1.26
USP40-209ENST00000452724 RNF112Q9ULX5 631 aa7.2□□□□□ -1.26
USP40-209ENST00000452724 SOX13Q9UN79 622 aa7.2□□□□□ -1.26
USP40-209ENST00000452724 RAXQ9Y2V3 346 aa7.2□□□□□ -1.26
USP40-209ENST00000452724 IKBKEQ14164 716 aa7.19□□□□□ -1.26
USP40-209ENST00000452724 ANKRD34AQ69YU3 496 aa7.19□□□□□ -1.26
USP40-209ENST00000452724 ADAMTSL4Q6UY14 1074 aa7.19□□□□□ -1.26
USP40-209ENST00000452724 FOXD4L4Q8WXT5 416 aaPredicted RBP7.19□□□□□ -1.26
USP40-209ENST00000452724 NXPE3Q969Y0 559 aa7.19□□□□□ -1.26
USP40-209ENST00000452724 RNF208Q9H0X6 261 aa7.19□□□□□ -1.26
USP40-209ENST00000452724 FOXD3Q9UJU5 478 aaPredicted RBP7.19□□□□□ -1.26
USP40-209ENST00000452724 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.19□□□□□ -1.26
USP40-209ENST00000452724 NDUFB5O43674 189 aa7.18□□□□□ -1.26
USP40-209ENST00000452724 TRPA1O75762 1119 aa7.18□□□□□ -1.26
USP40-209ENST00000452724 NLRP12P59046 1061 aa7.18□□□□□ -1.26
USP40-209ENST00000452724 KIAA1211Q6ZU35 1233 aa7.18□□□□□ -1.26
USP40-209ENST00000452724 ASAP3Q8TDY4 903 aa7.18□□□□□ -1.26
USP40-209ENST00000452724 UBL7Q96S82 380 aaPredicted RBP7.18□□□□□ -1.26
USP40-209ENST00000452724 CCDC87Q9NVE4 849 aa7.18□□□□□ -1.26
USP40-209ENST00000452724 TM4SF5O14894 197 aa7.17□□□□□ -1.26
USP40-209ENST00000452724 DDX3YO15523 660 aaKnown RBP7.17□□□□□ -1.26
USP40-209ENST00000452724 ADAM11O75078 769 aa7.17□□□□□ -1.26
USP40-209ENST00000452724 PDE3BQ13370 1112 aa7.17□□□□□ -1.26
USP40-209ENST00000452724 FDX2Q6P4F2 183 aa7.17□□□□□ -1.26
USP40-209ENST00000452724 UBASH3BQ8TF42 649 aa7.17□□□□□ -1.26
USP40-209ENST00000452724 HHIPQ96QV1 700 aa7.17□□□□□ -1.26
USP40-209ENST00000452724 RUSC1Q9BVN2 902 aa7.17□□□□□ -1.26
USP40-209ENST00000452724 BHLHE41Q9C0J9 482 aaPredicted RBP7.17□□□□□ -1.26
USP40-209ENST00000452724 ZFYVE28Q9HCC9 887 aa7.17□□□□□ -1.26
USP40-209ENST00000452724 FAM46AQ96IP4 442 aaKnown RBP7.16□□□□□ -1.26
USP40-209ENST00000452724 SOX17Q9H6I2 414 aaPredicted RBP7.16□□□□□ -1.26
USP40-209ENST00000452724 HYAL3O43820 417 aaPredicted RBP7.15□□□□□ -1.26
USP40-209ENST00000452724 IGLV1-40P01703 118 aa7.15□□□□□ -1.26
USP40-209ENST00000452724 MYRFLQ96LU7 910 aa7.15□□□□□ -1.26
USP40-209ENST00000452724 HIF3AQ9Y2N7 669 aa7.15□□□□□ -1.26
USP40-209ENST00000452724 GAS2O43903 313 aaKnown RBP7.14□□□□□ -1.27
USP40-209ENST00000452724 VN1R5Q7Z5H4 357 aa7.14□□□□□ -1.27
USP40-209ENST00000452724 ARMC10Q8N2F6 343 aa7.14□□□□□ -1.27
USP40-209ENST00000452724 CITED4Q96RK1 184 aa7.14□□□□□ -1.27
USP40-209ENST00000452724 DCTN4Q9UJW0 460 aa7.14□□□□□ -1.27
USP40-209ENST00000452724 MEGF11A6BM72 1044 aa7.13□□□□□ -1.27
USP40-209ENST00000452724 SOX1O00570 391 aaPredicted RBP7.13□□□□□ -1.27
USP40-209ENST00000452724 MAPK1P28482 360 aa7.13□□□□□ -1.27
USP40-209ENST00000452724 PEAR1Q5VY43 1037 aaPredicted RBP7.13□□□□□ -1.27
USP40-209ENST00000452724 NUTM2GQ5VZR2 741 aa7.13□□□□□ -1.27
USP40-209ENST00000452724 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.13□□□□□ -1.27
USP40-209ENST00000452724 GALNT12Q8IXK2 581 aa7.13□□□□□ -1.27
USP40-209ENST00000452724 USP26Q9BXU7 913 aa7.13□□□□□ -1.27
USP40-209ENST00000452724 KCNF1Q9H3M0 494 aa7.13□□□□□ -1.27
USP40-209ENST00000452724 CYP4F12Q9HCS2 524 aa7.13□□□□□ -1.27
USP40-209ENST00000452724 LATS2Q9NRM7 1088 aa7.13□□□□□ -1.27
USP40-209ENST00000452724 PCMTD2Q9NV79 361 aa7.13□□□□□ -1.27
USP40-209ENST00000452724 POLR3DP05423 398 aaPredicted RBP7.12□□□□□ -1.27
USP40-209ENST00000452724 NFIAQ12857 509 aa7.12□□□□□ -1.27
USP40-209ENST00000452724 CCDC27Q2M243 656 aa7.12□□□□□ -1.27
USP40-209ENST00000452724 HP1BP3Q5SSJ5 553 aaPredicted RBP7.12□□□□□ -1.27
USP40-209ENST00000452724 TMCO4Q5TGY1 634 aa7.12□□□□□ -1.27
USP40-209ENST00000452724 CLEC10AQ8IUN9 316 aa7.12□□□□□ -1.27
USP40-209ENST00000452724 FAM20CQ8IXL6 584 aa7.12□□□□□ -1.27
USP40-209ENST00000452724 DDX54Q8TDD1 881 aaKnown RBP7.12□□□□□ -1.27
USP40-209ENST00000452724 RBCK1Q9BYM8 510 aa7.12□□□□□ -1.27
USP40-209ENST00000452724 LIN7BQ9HAP6 207 aa7.12□□□□□ -1.27
USP40-209ENST00000452724 ESRRAP11474 423 aaPredicted RBP7.11□□□□□ -1.27
USP40-209ENST00000452724 BMP3P12645 472 aa7.11□□□□□ -1.27
USP40-209ENST00000452724 GRIK1P39086 918 aa7.11□□□□□ -1.27
USP40-209ENST00000452724 PREPP48147 710 aa7.11□□□□□ -1.27
USP40-209ENST00000452724 GSTM4Q03013 218 aa7.11□□□□□ -1.27
USP40-209ENST00000452724 RNF43Q68DV7 783 aa7.11□□□□□ -1.27
USP40-209ENST00000452724 TMC1Q8TDI8 760 aa7.11□□□□□ -1.27
USP40-209ENST00000452724 FAM83CQ9BQN1 747 aa7.11□□□□□ -1.27
USP40-209ENST00000452724 DBNDD2Q9BQY9 259 aa7.11□□□□□ -1.27
USP40-209ENST00000452724 C7orf69Q9H7B7 122 aa7.11□□□□□ -1.27
USP40-209ENST00000452724 ZFYVE1Q9HBF4 777 aa7.11□□□□□ -1.27
USP40-209ENST00000452724 A0A096LPE4 126 aa7.1□□□□□ -1.27
USP40-209ENST00000452724 A0A1W2PP55 124 aa7.1□□□□□ -1.27
USP40-209ENST00000452724 A0A1W2PPZ6 126 aa7.1□□□□□ -1.27
USP40-209ENST00000452724 COBLO75128 1261 aa7.1□□□□□ -1.27
USP40-209ENST00000452724 CPNE3O75131 537 aaKnown RBP7.1□□□□□ -1.27
USP40-209ENST00000452724 BEND4Q6ZU67 534 aa7.1□□□□□ -1.27
USP40-209ENST00000452724 CCNJLQ8IV13 435 aa7.1□□□□□ -1.27
USP40-209ENST00000452724 TRIM42Q8IWZ5 723 aa7.1□□□□□ -1.27
USP40-209ENST00000452724 C12orf50Q8NA57 414 aaPredicted RBP7.1□□□□□ -1.27
USP40-209ENST00000452724 GIMAP7Q8NHV1 300 aa7.1□□□□□ -1.27
USP40-209ENST00000452724 FAM129BQ96TA1 746 aa7.1□□□□□ -1.27
USP40-209ENST00000452724 CLEC4MQ9H2X3 399 aaPredicted RBP7.1□□□□□ -1.27
USP40-209ENST00000452724 SUGCTQ9HAC7 445 aa7.1□□□□□ -1.27
USP40-209ENST00000452724 LOC100289279A0A1B0GTE1 492 aa7.09□□□□□ -1.27
USP40-209ENST00000452724 HMX2A2RU54 273 aa7.09□□□□□ -1.27
USP40-209ENST00000452724 CYP11A1P05108 521 aa7.09□□□□□ -1.27
USP40-209ENST00000452724 SSTR4P31391 388 aa7.09□□□□□ -1.27
USP40-209ENST00000452724 PCDH1Q08174 1060 aa7.09□□□□□ -1.27
USP40-209ENST00000452724 HGSNATQ68CP4 663 aa7.09□□□□□ -1.27
USP40-209ENST00000452724 TMC7Q7Z402 723 aa7.09□□□□□ -1.27
USP40-209ENST00000452724 ZSCAN29Q8IWY8 852 aaPredicted RBP7.09□□□□□ -1.27
USP40-209ENST00000452724 SMG8Q8ND04 991 aaKnown RBP7.09□□□□□ -1.27
USP40-209ENST00000452724 TMPRSS13Q9BYE2 586 aa7.09□□□□□ -1.27
USP40-209ENST00000452724 METTL12A8MUP2 240 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms