RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 FSIP1Q8NA03 581 aa8.57□□□□□ -1.04
SYNE1-213ENST00000448038 GJA3Q9Y6H8 435 aa8.57□□□□□ -1.04
SYNE1-213ENST00000448038 DEPDC5O75140 1603 aa8.57□□□□□ -1.04
SYNE1-213ENST00000448038 CPA1P15085 419 aa8.57□□□□□ -1.04
SYNE1-213ENST00000448038 ATG3Q9NT62 314 aa8.57□□□□□ -1.04
SYNE1-213ENST00000448038 AATFQ9NY61 560 aaKnown RBP eCLIP8.57□□□□□ -1.04
SYNE1-213ENST00000448038 MYO3AQ8NEV4 1616 aa8.57□□□□□ -1.04
SYNE1-213ENST00000448038 ZNF532Q9HCE3 1301 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.56□□□□□ -1.04
SYNE1-213ENST00000448038 ERVV-1B6SEH8 477 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 SLC27A2O14975 620 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 CALM1P0DP23 149 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 CALM2P0DP24 149 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 CALM3P0DP25 149 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 SUPT20HQ8NEM7 779 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 GRPEL1Q9HAV7 217 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 CLEC11AQ9Y240 323 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 RTL9Q8NET4 1388 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 TMEM131LA2VDJ0 1609 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 FER1L4A9Z1Z3 1794 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 CRB1P82279 1406 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 CCDC183Q5T5S1 534 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 NLRP10Q86W26 655 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 SMARCE1Q969G3 411 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 ZKSCAN3Q9BRR0 538 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 TANGO6Q9C0B7 1094 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 FBXO3Q9UK99 471 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 CPS1P31327 1500 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 JCADQ9P266 1359 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 MAST3O60307 1309 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 TECPR2O15040 1411 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 B4E1Z4 1266 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 WWC2Q6AWC2 1192 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 CHRNDQ07001 517 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 HEATR3Q7Z4Q2 680 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 PUS3Q9BZE2 481 aaKnown RBP8.56□□□□□ -1.04
SYNE1-213ENST00000448038 OVOS2A0A0J9YW53 1432 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 OVOS2Q6IE36 1432 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 GYG1P46976 350 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 C2CD5Q86YS7 1000 aa8.56□□□□□ -1.04
SYNE1-213ENST00000448038 LRRC7Q96NW7 1537 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 RXRAP19793 462 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 ADGRB1O14514 1584 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 CCDC173Q0VFZ6 552 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 CCDC102BQ68D86 513 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 CNNM3Q8NE01 707 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 CCDC148Q8NFR7 591 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 ARID3AQ99856 593 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 SMTNL1A8MU46 457 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 TNNI2P48788 182 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 BCAMP50895 628 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 CCDC70Q6NSX1 233 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 TCP11L1Q9NUJ3 509 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 A0A0U1RQG5 324 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-213ENST00000448038 PDE8BO95263 885 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 SERPINB2P05120 415 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 CT47A1Q5JQC4 288 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-213ENST00000448038 TBC1D22AQ8WUA7 517 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 SNX14Q9Y5W7 946 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 MROH2AA6NES4 1674 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 PPIP5K2O43314 1243 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 GSPT1P15170 499 aaKnown RBP8.55□□□□□ -1.04
SYNE1-213ENST00000448038 RPS6KB1P23443 525 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 LMOD1P29536 600 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-213ENST00000448038 ERFEQ4G0M1 354 aa8.55□□□□□ -1.04
SYNE1-213ENST00000448038 RICTORQ6R327 1708 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 ATP2B4P23634 1241 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 GTF2IP78347 998 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 TRAF1Q13077 416 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 PPFIBP1Q86W92 1011 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 GJD4Q96KN9 370 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-213ENST00000448038 PANK2Q9BZ23 570 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 SRP68Q9UHB9 627 aaKnown RBP8.54□□□□□ -1.04
SYNE1-213ENST00000448038 IQGAP1P46940 1657 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 NF2P35240 595 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 NAPAP54920 295 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 CERS3Q8IU89 383 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 CKAP2LQ8IYA6 745 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 DDX19AQ9NUU7 478 aaKnown RBP8.54□□□□□ -1.04
SYNE1-213ENST00000448038 ANO10Q9NW15 660 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 CTAGE5O15320 804 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 CBFA2T2O43439 604 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 CIAO1O76071 339 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 RBM27Q9P2N5 1060 aaKnown RBP8.54□□□□□ -1.04
SYNE1-213ENST00000448038 PTPDC1A2A3K4 754 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 UBA7P41226 1012 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 EIF6P56537 245 aaKnown RBP8.54□□□□□ -1.04
SYNE1-213ENST00000448038 MFSD14BQ5SR56 506 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 KLHL10Q6JEL2 608 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 SEC31BQ9NQW1 1179 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 ZNHIT6Q9NWK9 470 aaKnown RBP8.54□□□□□ -1.04
SYNE1-213ENST00000448038 OVOS2A0A0G2JMS6 1433 aa8.54□□□□□ -1.04
SYNE1-213ENST00000448038 PRDM1O75626 825 aa8.53□□□□□ -1.04
SYNE1-213ENST00000448038 NIM1KQ8IY84 436 aa8.53□□□□□ -1.04
SYNE1-213ENST00000448038 HAUS7Q99871 368 aa8.53□□□□□ -1.04
SYNE1-213ENST00000448038 UBE2HP62256 183 aa8.53□□□□□ -1.04
SYNE1-213ENST00000448038 TTLL5Q6EMB2 1281 aa8.53□□□□□ -1.04
SYNE1-213ENST00000448038 CALML4Q96GE6 196 aa8.53□□□□□ -1.04
SYNE1-213ENST00000448038 TMEM87BQ96K49 555 aa8.53□□□□□ -1.04
SYNE1-213ENST00000448038 PPLO60437 1756 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms