RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 ITGA6P23229 1130 aa18.5■□□□□ 0.55
HMGN1-208ENST00000443046 DLGAP5Q15398 846 aa18.5■□□□□ 0.55
HMGN1-208ENST00000443046 UBE3BQ7Z3V4 1068 aa18.5■□□□□ 0.55
HMGN1-208ENST00000443046 ARMC5Q96C12 935 aa18.5■□□□□ 0.55
HMGN1-208ENST00000443046 PCDHAC2Q9Y5I4 1007 aa18.5■□□□□ 0.55
HMGN1-208ENST00000443046 TESPA1A2RU30 521 aaPredicted RBP18.49■□□□□ 0.55
HMGN1-208ENST00000443046 PPP1R12BO60237 982 aaPredicted RBP18.49■□□□□ 0.55
HMGN1-208ENST00000443046 GJA5P36382 358 aa18.49■□□□□ 0.55
HMGN1-208ENST00000443046 CHRNDQ07001 517 aa18.49■□□□□ 0.55
HMGN1-208ENST00000443046 GCKRQ14397 625 aa18.49■□□□□ 0.55
HMGN1-208ENST00000443046 ERO1AQ96HE7 468 aa18.49■□□□□ 0.55
HMGN1-208ENST00000443046 USP2O75604 605 aaPredicted RBP18.48■□□□□ 0.55
HMGN1-208ENST00000443046 CAP1Q01518 475 aa18.48■□□□□ 0.55
HMGN1-208ENST00000443046 DDX10Q13206 875 aaKnown RBP18.48■□□□□ 0.55
HMGN1-208ENST00000443046 PTPN18Q99952 460 aa18.48■□□□□ 0.55
HMGN1-208ENST00000443046 RANBP2P49792 3224 aaKnown RBP18.47■□□□□ 0.55
HMGN1-208ENST00000443046 SPDYE2BA6NHP3 402 aa18.47■□□□□ 0.55
HMGN1-208ENST00000443046 SPDYE6P0CI01 402 aa18.47■□□□□ 0.55
HMGN1-208ENST00000443046 IL1R1P14778 569 aa18.47■□□□□ 0.55
HMGN1-208ENST00000443046 FKBP1AP62942 108 aaKnown RBP18.47■□□□□ 0.55
HMGN1-208ENST00000443046 CRHR2Q13324 411 aa18.47■□□□□ 0.55
HMGN1-208ENST00000443046 SUPT20HL1Q3ZLR7 823 aa18.47■□□□□ 0.55
HMGN1-208ENST00000443046 G2E3Q7L622 706 aa18.47■□□□□ 0.55
HMGN1-208ENST00000443046 PRMT6Q96LA8 375 aaPredicted RBP18.47■□□□□ 0.55
HMGN1-208ENST00000443046 MPHOSPH8Q99549 860 aa18.47■□□□□ 0.55
HMGN1-208ENST00000443046 A0A1B0GUL6 1792 aa18.47■□□□□ 0.55
HMGN1-208ENST00000443046 AOX1Q06278 1338 aa18.47■□□□□ 0.55
HMGN1-208ENST00000443046 SNAP23O00161 211 aa18.46■□□□□ 0.55
HMGN1-208ENST00000443046 CFAP100Q494V2 611 aa18.46■□□□□ 0.55
HMGN1-208ENST00000443046 NBPF12Q5TAG4 269 aaPredicted RBP18.46■□□□□ 0.55
HMGN1-208ENST00000443046 CD99L2Q8TCZ2 262 aa18.46■□□□□ 0.55
HMGN1-208ENST00000443046 EN2P19622 333 aaPredicted RBP18.45■□□□□ 0.54
HMGN1-208ENST00000443046 OTUD7BQ6GQQ9 843 aa18.45■□□□□ 0.54
HMGN1-208ENST00000443046 STK31Q9BXU1 1019 aa18.45■□□□□ 0.54
HMGN1-208ENST00000443046 EFCC1Q9HA90 598 aa18.45■□□□□ 0.54
HMGN1-208ENST00000443046 CEP290O15078 2479 aa18.45■□□□□ 0.54
HMGN1-208ENST00000443046 KCNJ4P48050 445 aa18.44■□□□□ 0.54
HMGN1-208ENST00000443046 IREB2P48200 963 aaKnown RBP18.44■□□□□ 0.54
HMGN1-208ENST00000443046 SP3Q02447 781 aa18.44■□□□□ 0.54
HMGN1-208ENST00000443046 ANKRD13AQ8IZ07 590 aa18.44■□□□□ 0.54
HMGN1-208ENST00000443046 OTOFQ9HC10 1997 aa18.44■□□□□ 0.54
HMGN1-208ENST00000443046 CLRN2A0PK11 232 aa18.43■□□□□ 0.54
HMGN1-208ENST00000443046 MYO1BO43795 1136 aa18.43■□□□□ 0.54
HMGN1-208ENST00000443046 TAF5LO75529 589 aa18.43■□□□□ 0.54
HMGN1-208ENST00000443046 SLC4A2P04920 1241 aa18.43■□□□□ 0.54
HMGN1-208ENST00000443046 FXR1P51114 621 aaKnown RBP eCLIP18.43■□□□□ 0.54
HMGN1-208ENST00000443046 TSR2Q969E8 191 aaKnown RBP18.43■□□□□ 0.54
HMGN1-208ENST00000443046 MS4A4AQ96JQ5 239 aa18.43■□□□□ 0.54
HMGN1-208ENST00000443046 PRKRIP1Q9H875 184 aaPredicted RBP18.43■□□□□ 0.54
HMGN1-208ENST00000443046 RASA3Q14644 834 aa18.42■□□□□ 0.54
HMGN1-208ENST00000443046 ZNF333Q96JL9 665 aa18.42■□□□□ 0.54
HMGN1-208ENST00000443046 CACNA1FO60840 1977 aa18.41■□□□□ 0.54
HMGN1-208ENST00000443046 ANKRD18BA2A2Z9 1011 aa18.41■□□□□ 0.54
HMGN1-208ENST00000443046 F8W031 263 aaPredicted RBP18.41■□□□□ 0.54
HMGN1-208ENST00000443046 FOXO4P98177 505 aa18.41■□□□□ 0.54
HMGN1-208ENST00000443046 ZNF804AQ7Z570 1209 aa18.41■□□□□ 0.54
HMGN1-208ENST00000443046 HELBQ8NG08 1087 aaPredicted RBP18.41■□□□□ 0.54
HMGN1-208ENST00000443046 LINS1Q8NG48 757 aa18.41■□□□□ 0.54
HMGN1-208ENST00000443046 VEZTQ9HBM0 779 aa18.41■□□□□ 0.54
HMGN1-208ENST00000443046 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.41■□□□□ 0.54
HMGN1-208ENST00000443046 FLIIQ13045 1269 aa18.4■□□□□ 0.54
HMGN1-208ENST00000443046 TWISTNBQ3B726 338 aaPredicted RBP18.4■□□□□ 0.54
HMGN1-208ENST00000443046 TEPSINQ96N21 525 aa18.4■□□□□ 0.54
HMGN1-208ENST00000443046 MYH16Q9H6N6 1097 aa18.4■□□□□ 0.54
HMGN1-208ENST00000443046 FAM205AQ6ZU69 1335 aa18.4■□□□□ 0.54
HMGN1-208ENST00000443046 CCDC27Q2M243 656 aa18.39■□□□□ 0.53
HMGN1-208ENST00000443046 SPDYE2Q495Y8 402 aa18.39■□□□□ 0.53
HMGN1-208ENST00000443046 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.39■□□□□ 0.53
HMGN1-208ENST00000443046 DNAAF4Q8WXU2 420 aa18.39■□□□□ 0.53
HMGN1-208ENST00000443046 BRI3BPQ8WY22 251 aa18.39■□□□□ 0.53
HMGN1-208ENST00000443046 OPTNQ96CV9 577 aa18.39■□□□□ 0.53
HMGN1-208ENST00000443046 IFIT5Q13325 482 aaKnown RBP18.38■□□□□ 0.53
HMGN1-208ENST00000443046 ELP3Q9H9T3 547 aa18.38■□□□□ 0.53
HMGN1-208ENST00000443046 ZNF70Q9UC06 446 aaPredicted RBP18.38■□□□□ 0.53
HMGN1-208ENST00000443046 SERPINA10Q9UK55 444 aa18.38■□□□□ 0.53
HMGN1-208ENST00000443046 TRIOBPQ9H2D6 2365 aa18.37■□□□□ 0.53
HMGN1-208ENST00000443046 TNFAIP1Q13829 316 aa18.37■□□□□ 0.53
HMGN1-208ENST00000443046 TMEM106CQ9BVX2 250 aa18.37■□□□□ 0.53
HMGN1-208ENST00000443046 JAG2Q9Y219 1238 aa18.37■□□□□ 0.53
HMGN1-208ENST00000443046 A0A0C4DFX4 3053 aa18.36■□□□□ 0.53
HMGN1-208ENST00000443046 FKBP5Q13451 457 aaPredicted RBP18.36■□□□□ 0.53
HMGN1-208ENST00000443046 CDAN1Q8IWY9 1227 aa18.36■□□□□ 0.53
HMGN1-208ENST00000443046 TDRD7Q8NHU6 1098 aaKnown RBP18.36■□□□□ 0.53
HMGN1-208ENST00000443046 CNKSR2Q8WXI2 1034 aa18.36■□□□□ 0.53
HMGN1-208ENST00000443046 COLQQ9Y215 455 aaPredicted RBP18.36■□□□□ 0.53
HMGN1-208ENST00000443046 PTCH2Q9Y6C5 1203 aa18.36■□□□□ 0.53
HMGN1-208ENST00000443046 ARAP2Q8WZ64 1704 aa18.35■□□□□ 0.53
HMGN1-208ENST00000443046 GTF2A2P52657 109 aa18.35■□□□□ 0.53
HMGN1-208ENST00000443046 RBM5P52756 815 aaKnown RBP eCLIP18.35■□□□□ 0.53
HMGN1-208ENST00000443046 ARHGEF6Q15052 776 aa18.35■□□□□ 0.53
HMGN1-208ENST00000443046 NBPF11Q86T75 865 aa18.35■□□□□ 0.53
HMGN1-208ENST00000443046 WWC1Q8IX03 1113 aa18.35■□□□□ 0.53
HMGN1-208ENST00000443046 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.35■□□□□ 0.53
HMGN1-208ENST00000443046 TDRD3Q9H7E2 651 aaKnown RBP18.35■□□□□ 0.53
HMGN1-208ENST00000443046 ZFYVE28Q9HCC9 887 aa18.35■□□□□ 0.53
HMGN1-208ENST00000443046 IL16Q14005 1332 aa18.34■□□□□ 0.53
HMGN1-208ENST00000443046 CCL15-CCL14A0A0B4J2E2 113 aa18.34■□□□□ 0.53
HMGN1-208ENST00000443046 MAP3K9P80192 1104 aa18.34■□□□□ 0.53
HMGN1-208ENST00000443046 VGLL4Q14135 290 aa18.34■□□□□ 0.53
HMGN1-208ENST00000443046 TAF1CQ15572 869 aaPredicted RBP18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms