RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 POLR3GO15318 223 aaPredicted RBP7.44□□□□□ -1.22
MCF2-205ENST00000437564 KDM1AO60341 852 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 PPFIA3O75145 1194 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 MBD3O95983 291 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 FERP16591 822 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 MAP2K5Q13163 448 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 CCDC57Q2TAC2 916 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 CCDC38Q502W7 563 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 SPC24Q8NBT2 197 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 GABPB2Q8TAK5 448 aaPredicted RBP7.44□□□□□ -1.22
MCF2-205ENST00000437564 CUL5Q93034 780 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 ZKSCAN4Q969J2 545 aaPredicted RBP7.44□□□□□ -1.22
MCF2-205ENST00000437564 SLC35B4Q969S0 331 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 RABEP2Q9H5N1 569 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 MKS1Q9NXB0 559 aa7.44□□□□□ -1.22
MCF2-205ENST00000437564 ATP1B4Q9UN42 357 aaPredicted RBP7.44□□□□□ -1.22
MCF2-205ENST00000437564 ANKRD36BQ8N2N9 1353 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 CLIP1P30622 1438 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 CECR2Q9BXF3 1484 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 GOLGA8AA7E2F4 631 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 TMEM232C9JQI7 657 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 KIF3BO15066 747 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 KIAA0754O94854 1291 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 SLU7O95391 586 aaKnown RBP7.43□□□□□ -1.22
MCF2-205ENST00000437564 EZRP15311 586 aaKnown RBP7.43□□□□□ -1.22
MCF2-205ENST00000437564 MAGEA10P43363 369 aaPredicted RBP7.43□□□□□ -1.22
MCF2-205ENST00000437564 USP4Q13107 963 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 EIF4A2Q14240 407 aaKnown RBP7.43□□□□□ -1.22
MCF2-205ENST00000437564 SLMAPQ14BN4 828 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 MTHFD1LQ6UB35 978 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 SPNS2Q8IVW8 549 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 ANKK1Q8NFD2 765 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 SPDL1Q96EA4 605 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 MS4A3Q96HJ5 214 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 SCYL1Q96KG9 808 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 ATP6V0A4Q9HBG4 840 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 PICK1Q9NRD5 415 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 UBAP1Q9NZ09 502 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.43□□□□□ -1.22
MCF2-205ENST00000437564 GMEB1Q9Y692 573 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 ATXN2Q99700 1313 aaKnown RBP7.43□□□□□ -1.22
MCF2-205ENST00000437564 ABCA5Q8WWZ7 1642 aa7.43□□□□□ -1.22
MCF2-205ENST00000437564 TMEM221A6NGB7 291 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 A6NJR5 290 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 FAM25EA8MYX2 175 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 EIF3FO00303 357 aaPredicted RBP7.42□□□□□ -1.22
MCF2-205ENST00000437564 LIN7AO14910 233 aaPredicted RBP7.42□□□□□ -1.22
MCF2-205ENST00000437564 IDO1P14902 403 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 DESP17661 470 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 OAS2P29728 719 aaKnown RBP7.42□□□□□ -1.22
MCF2-205ENST00000437564 TRIM29Q14134 588 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 RCN1Q15293 331 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 SEPT7Q16181 437 aaKnown RBP7.42□□□□□ -1.22
MCF2-205ENST00000437564 OLFML1Q6UWY5 402 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 SLF2Q8IX21 1173 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 STK11IPQ8N1F8 1099 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 CLUAP1Q96AJ1 413 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 PPP1R14BQ96C90 147 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 NAP1L3Q99457 506 aaPredicted RBP7.42□□□□□ -1.22
MCF2-205ENST00000437564 MTRQ99707 1265 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 CORO1BQ9BR76 489 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 PAGR1Q9BTK6 254 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 LRRC27Q9C0I9 530 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 KLHL42Q9P2K6 505 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 ZNF510Q9Y2H8 683 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 RPAP1Q9BWH6 1393 aaPredicted RBP7.42□□□□□ -1.22
MCF2-205ENST00000437564 ERICH2A1L162 156 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 TUBB4AP04350 444 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 CA8P35219 290 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 PAPOLAP51003 745 aaKnown RBP7.42□□□□□ -1.22
MCF2-205ENST00000437564 CSE1LP55060 971 aaKnown RBP7.42□□□□□ -1.22
MCF2-205ENST00000437564 IRF5Q13568 498 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 DSG2Q14126 1118 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 NUGGCQ68CJ6 796 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 CWC27Q6UX04 472 aaKnown RBP7.42□□□□□ -1.22
MCF2-205ENST00000437564 NYAP1Q6ZVC0 841 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 CLASRPQ8N2M8 674 aaKnown RBP7.42□□□□□ -1.22
MCF2-205ENST00000437564 RBM33Q96EV2 1170 aaKnown RBP7.42□□□□□ -1.22
MCF2-205ENST00000437564 IWS1Q96ST2 819 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 CDC5LQ99459 802 aaKnown RBP7.42□□□□□ -1.22
MCF2-205ENST00000437564 DHX36Q9H2U1 1008 aaKnown RBP7.42□□□□□ -1.22
MCF2-205ENST00000437564 TTC12Q9H892 705 aaPredicted RBP7.42□□□□□ -1.22
MCF2-205ENST00000437564 CROTQ9UKG9 612 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 ZNF652Q9Y2D9 606 aa7.42□□□□□ -1.22
MCF2-205ENST00000437564 ZBED4O75132 1171 aa7.41□□□□□ -1.22
MCF2-205ENST00000437564 MTA2O94776 668 aa7.41□□□□□ -1.22
MCF2-205ENST00000437564 ENPP1P22413 925 aa7.41□□□□□ -1.22
MCF2-205ENST00000437564 MCM3P25205 808 aa7.41□□□□□ -1.22
MCF2-205ENST00000437564 DYNC1I2Q13409 638 aaKnown RBP7.41□□□□□ -1.22
MCF2-205ENST00000437564 CUL4BQ13620 913 aa7.41□□□□□ -1.22
MCF2-205ENST00000437564 SMC1AQ14683 1233 aaKnown RBP7.41□□□□□ -1.22
MCF2-205ENST00000437564 GNPTABQ3T906 1256 aa7.41□□□□□ -1.22
MCF2-205ENST00000437564 IQCEQ6IPM2 695 aa7.41□□□□□ -1.22
MCF2-205ENST00000437564 ZNF662Q6ZS27 426 aa7.41□□□□□ -1.22
MCF2-205ENST00000437564 PCGF5Q86SE9 256 aa7.41□□□□□ -1.22
MCF2-205ENST00000437564 SLC43A3Q8NBI5 491 aa7.41□□□□□ -1.22
MCF2-205ENST00000437564 KAT2BQ92831 832 aa7.41□□□□□ -1.22
MCF2-205ENST00000437564 GSDMAQ96QA5 445 aa7.41□□□□□ -1.22
MCF2-205ENST00000437564 GORASP1Q9BQQ3 440 aa7.41□□□□□ -1.22
MCF2-205ENST00000437564 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms