RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 BBOF1Q8ND07 529 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 NEK1Q96PY6 1258 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 MYL5Q02045 173 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 TMEM132AQ24JP5 1023 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 CYP26C1Q6V0L0 522 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 CCDC124Q96CT7 223 aaKnown RBP8.08□□□□□ -1.12
VPS53-204ENST00000437048 ECHDC1Q9NTX5 307 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 SEMA3FQ13275 785 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 BANK1Q8NDB2 785 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 RABGGTAQ92696 567 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 BABAM1Q9NWV8 329 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 PIK3C2GO75747 1445 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 A0A087WUV0 522 aaPredicted RBP8.08□□□□□ -1.12
VPS53-204ENST00000437048 SSBP05455 408 aaKnown RBP eCLIP8.08□□□□□ -1.12
VPS53-204ENST00000437048 TEX13AQ9BXU3 409 aaPredicted RBP8.08□□□□□ -1.12
VPS53-204ENST00000437048 SPG7Q9UQ90 795 aa8.08□□□□□ -1.12
VPS53-204ENST00000437048 RTL9Q8NET4 1388 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 I3L4J1 428 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 RARSP54136 660 aaKnown RBP8.07□□□□□ -1.12
VPS53-204ENST00000437048 CFAP221Q4G0U5 840 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 LEO1Q8WVC0 666 aaPredicted RBP8.07□□□□□ -1.12
VPS53-204ENST00000437048 CUL5Q93034 780 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 VPS18Q9P253 973 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 IARSP41252 1262 aaKnown RBP8.07□□□□□ -1.12
VPS53-204ENST00000437048 TYRO3Q06418 890 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 MSH6P52701 1360 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 PPP2R3AQ06190 1150 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 DMTNQ08495 405 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 NBPF20Q3BBV1 942 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 KCNH5Q8NCM2 988 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 UTP11Q9Y3A2 253 aaKnown RBP8.07□□□□□ -1.12
VPS53-204ENST00000437048 SCAF11Q99590 1463 aaKnown RBP8.07□□□□□ -1.12
VPS53-204ENST00000437048 ZFYVE9O95405 1425 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 PDE4BQ07343 736 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 SPTY2D1Q68D10 685 aaPredicted RBP8.07□□□□□ -1.12
VPS53-204ENST00000437048 PIP4K2CQ8TBX8 421 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 PSMD1Q99460 953 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 NAPBQ9H115 298 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 EXOSC9Q06265 439 aaKnown RBP8.07□□□□□ -1.12
VPS53-204ENST00000437048 TEX14Q8IWB6 1497 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 A0A1B0GVL5 298 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 CCDC151A5D8V7 595 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 IKQ13123 557 aaPredicted RBP8.07□□□□□ -1.12
VPS53-204ENST00000437048 ZGPATQ8N5A5 531 aaKnown RBP8.07□□□□□ -1.12
VPS53-204ENST00000437048 SCLT1Q96NL6 688 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 AACSQ86V21 672 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 FBXO41Q8TF61 875 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 MIS12Q9H081 205 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 FGFR1OP2Q9NVK5 253 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 FAF1Q9UNN5 650 aaPredicted RBP8.07□□□□□ -1.12
VPS53-204ENST00000437048 HNRNPCL1O60812 293 aaKnown RBP8.07□□□□□ -1.12
VPS53-204ENST00000437048 EIF2S2P20042 333 aaKnown RBP8.07□□□□□ -1.12
VPS53-204ENST00000437048 ESRRGP62508 458 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 IMPG2Q9BZV3 1241 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 BATF3Q9NR55 127 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 PIK3R4Q99570 1358 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 SPZ1Q9BXG8 430 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 DAAM1Q9Y4D1 1078 aa8.07□□□□□ -1.12
VPS53-204ENST00000437048 SLC4A2P04920 1241 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 ZSCAN26Q16670 478 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 MLKLQ8NB16 471 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 TYW1Q9NV66 732 aaKnown RBP8.06□□□□□ -1.12
VPS53-204ENST00000437048 A0A1B0GW55 424 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 PSDA5PKW4 1024 aaPredicted RBP8.06□□□□□ -1.12
VPS53-204ENST00000437048 DUX4L2P0CJ85 424 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 DUX4L3P0CJ86 424 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 DUX4L4P0CJ87 422 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 DUX4L5P0CJ88 424 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 DUX4L6P0CJ89 424 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 DUX4L7P0CJ90 424 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 NUCB1Q02818 461 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 INF2Q27J81 1249 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 TMX1Q9H3N1 280 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 DUX4Q9UBX2 424 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 NESP48681 1621 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 KIFAP3Q92845 792 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 REREQ9P2R6 1566 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 GNA14O95837 355 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 LDHCP07864 332 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 PRKAR2BP31323 418 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 MAP3K7CLP57077 242 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 WDHD1O75717 1129 aaPredicted RBP8.06□□□□□ -1.12
VPS53-204ENST00000437048 MAML3Q96JK9 1138 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 TMOD4Q9NZQ9 345 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 SKIP12755 728 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 FAM160A1Q05DH4 1040 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 PPP2R5AQ15172 486 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 FAM81BQ96LP2 452 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 IQUBQ8NA54 791 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 NCOA7Q8NI08 942 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 DDX54Q8TDD1 881 aaKnown RBP8.06□□□□□ -1.12
VPS53-204ENST00000437048 FAM96AQ9H5X1 160 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 MAGEF1Q9HAY2 307 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 MCF2L2Q86YR7 1114 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 ANKRD27Q96NW4 1050 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 BAG1Q99933 345 aaPredicted RBP8.06□□□□□ -1.12
VPS53-204ENST00000437048 C1orf115Q9H7X2 142 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 CCDC169A6NNP5 214 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 TRIM47Q96LD4 638 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms