RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.09■■□□□ 1.29
SHH-203ENST00000435425 F8W031 263 aaPredicted RBP23.08■■□□□ 1.29
SHH-203ENST00000435425 HSPA6P17066 643 aa23.08■■□□□ 1.29
SHH-203ENST00000435425 ADORA1P30542 326 aa23.08■■□□□ 1.29
SHH-203ENST00000435425 KIF4BQ2VIQ3 1234 aa23.08■■□□□ 1.29
SHH-203ENST00000435425 CNTROBQ8N137 903 aa23.08■■□□□ 1.29
SHH-203ENST00000435425 NEUROD6Q96NK8 337 aa23.08■■□□□ 1.29
SHH-203ENST00000435425 AKAP2Q9Y2D5 859 aa23.08■■□□□ 1.29
SHH-203ENST00000435425 A0A1B0GUL7 405 aa23.07■■□□□ 1.28
SHH-203ENST00000435425 CERS5Q8N5B7 392 aa23.07■■□□□ 1.28
SHH-203ENST00000435425 ZNF609O15014 1411 aa23.07■■□□□ 1.28
SHH-203ENST00000435425 ARAP2Q8WZ64 1704 aa23.06■■□□□ 1.28
SHH-203ENST00000435425 ZNF280AP59817 542 aaPredicted RBP23.06■■□□□ 1.28
SHH-203ENST00000435425 RPAP2Q8IXW5 612 aaPredicted RBP23.06■■□□□ 1.28
SHH-203ENST00000435425 OGFOD1Q8N543 542 aa23.06■■□□□ 1.28
SHH-203ENST00000435425 MYOZ2Q9NPC6 264 aa23.06■■□□□ 1.28
SHH-203ENST00000435425 FAM205AQ6ZU69 1335 aa23.06■■□□□ 1.28
SHH-203ENST00000435425 POLR2AP24928 1970 aaKnown RBP23.05■■□□□ 1.28
SHH-203ENST00000435425 HDAC9Q9UKV0 1011 aa23.05■■□□□ 1.28
SHH-203ENST00000435425 EXOC6BQ9Y2D4 811 aa23.05■■□□□ 1.28
SHH-203ENST00000435425 MFSD14BQ5SR56 506 aa23.04■■□□□ 1.28
SHH-203ENST00000435425 XAGE2Q96GT9 111 aa23.04■■□□□ 1.28
SHH-203ENST00000435425 NOP58Q9Y2X3 529 aaKnown RBP23.04■■□□□ 1.28
SHH-203ENST00000435425 HMMRO75330 724 aa23.03■■□□□ 1.28
SHH-203ENST00000435425 ITGBL1O95965 494 aaPredicted RBP23.03■■□□□ 1.28
SHH-203ENST00000435425 PHKA1P46020 1223 aa23.03■■□□□ 1.28
SHH-203ENST00000435425 SIRT2Q8IXJ6 389 aa23.03■■□□□ 1.28
SHH-203ENST00000435425 CRBNQ96SW2 442 aa23.03■■□□□ 1.28
SHH-203ENST00000435425 GNL3LQ9NVN8 582 aaKnown RBP23.03■■□□□ 1.28
SHH-203ENST00000435425 APBB1O00213 710 aa23.02■■□□□ 1.28
SHH-203ENST00000435425 FKBP1AP62942 108 aaKnown RBP23.02■■□□□ 1.28
SHH-203ENST00000435425 HTRA3P83110 453 aa23.02■■□□□ 1.28
SHH-203ENST00000435425 SCARF1Q14162 830 aa23.02■■□□□ 1.28
SHH-203ENST00000435425 GORABQ5T7V8 394 aa23.02■■□□□ 1.28
SHH-203ENST00000435425 ZC3H15Q8WU90 426 aaKnown RBP23.02■■□□□ 1.28
SHH-203ENST00000435425 ASTN2O75129 1339 aaPredicted RBP23.02■■□□□ 1.28
SHH-203ENST00000435425 APLP1P51693 650 aa23.01■■□□□ 1.27
SHH-203ENST00000435425 FMR1Q06787 632 aaKnown RBP eCLIP23.01■■□□□ 1.27
SHH-203ENST00000435425 CCDC102BQ68D86 513 aa23.01■■□□□ 1.27
SHH-203ENST00000435425 GLIS2Q9BZE0 524 aaPredicted RBP23.01■■□□□ 1.27
SHH-203ENST00000435425 BCL11AQ9H165 835 aa23.01■■□□□ 1.27
SHH-203ENST00000435425 PGAP2Q9UHJ9 254 aa23.01■■□□□ 1.27
SHH-203ENST00000435425 TRAF5O00463 557 aa23■■□□□ 1.27
SHH-203ENST00000435425 NBPF9Q3BBW0 867 aa23■■□□□ 1.27
SHH-203ENST00000435425 TNNI3KQ59H18 835 aa23■■□□□ 1.27
SHH-203ENST00000435425 DCPSQ96C86 337 aaKnown RBP23■■□□□ 1.27
SHH-203ENST00000435425 TTF2Q9UNY4 1162 aaKnown RBP23■■□□□ 1.27
SHH-203ENST00000435425 SUPT16HQ9Y5B9 1047 aaKnown RBP23■■□□□ 1.27
SHH-203ENST00000435425 FPGT-TNNI3KV9GXZ4 949 aa23■■□□□ 1.27
SHH-203ENST00000435425 RBM5P52756 815 aaKnown RBP eCLIP22.99■■□□□ 1.27
SHH-203ENST00000435425 GRIK5Q16478 980 aa22.99■■□□□ 1.27
SHH-203ENST00000435425 ANGEL2Q5VTE6 544 aaKnown RBP22.99■■□□□ 1.27
SHH-203ENST00000435425 USP48Q86UV5 1035 aa22.99■■□□□ 1.27
SHH-203ENST00000435425 TBC1D22AQ8WUA7 517 aa22.99■■□□□ 1.27
SHH-203ENST00000435425 GGA3Q9NZ52 723 aa22.99■■□□□ 1.27
SHH-203ENST00000435425 PASKQ96RG2 1323 aa22.99■■□□□ 1.27
SHH-203ENST00000435425 DLGAP5Q15398 846 aa22.98■■□□□ 1.27
SHH-203ENST00000435425 HSP90AB4PQ58FF6 505 aa22.98■■□□□ 1.27
SHH-203ENST00000435425 CDC37L1Q7L3B6 337 aa22.98■■□□□ 1.27
SHH-203ENST00000435425 ERC1Q8IUD2 1116 aa22.98■■□□□ 1.27
SHH-203ENST00000435425 PCDHAC2Q9Y5I4 1007 aa22.98■■□□□ 1.27
SHH-203ENST00000435425 COL1A1P02452 1464 aaPredicted RBP22.98■■□□□ 1.27
SHH-203ENST00000435425 TRPM7Q96QT4 1865 aa22.97■■□□□ 1.27
SHH-203ENST00000435425 WNT10BO00744 389 aa22.97■■□□□ 1.27
SHH-203ENST00000435425 MMP14P50281 582 aa22.97■■□□□ 1.27
SHH-203ENST00000435425 CFAP100Q494V2 611 aa22.97■■□□□ 1.27
SHH-203ENST00000435425 DLK2Q6UY11 383 aa22.97■■□□□ 1.27
SHH-203ENST00000435425 WDR66Q8TBY9 1149 aa22.97■■□□□ 1.27
SHH-203ENST00000435425 CCDC8Q9H0W5 538 aaPredicted RBP22.97■■□□□ 1.27
SHH-203ENST00000435425 GPR108Q9NPR9 543 aa22.97■■□□□ 1.27
SHH-203ENST00000435425 DENND2AQ9ULE3 1009 aa22.97■■□□□ 1.27
SHH-203ENST00000435425 SCAF8Q9UPN6 1271 aaKnown RBP22.97■■□□□ 1.27
SHH-203ENST00000435425 KRT26Q7Z3Y9 468 aa22.96■■□□□ 1.27
SHH-203ENST00000435425 DBNDD2Q9BQY9 259 aa22.96■■□□□ 1.27
SHH-203ENST00000435425 IL1RAPL2Q9NP60 686 aa22.96■■□□□ 1.27
SHH-203ENST00000435425 ADM5C9JUS6 153 aa22.95■■□□□ 1.26
SHH-203ENST00000435425 SEMA3EO15041 775 aa22.95■■□□□ 1.26
SHH-203ENST00000435425 RASGRF1Q13972 1273 aa22.95■■□□□ 1.26
SHH-203ENST00000435425 RHPN1Q8TCX5 695 aa22.95■■□□□ 1.26
SHH-203ENST00000435425 ZNF408Q9H9D4 720 aa22.95■■□□□ 1.26
SHH-203ENST00000435425 TTC39AQ5SRH9 613 aa22.94■■□□□ 1.26
SHH-203ENST00000435425 SULF1Q8IWU6 871 aa22.94■■□□□ 1.26
SHH-203ENST00000435425 EAF2Q96CJ1 260 aaPredicted RBP22.94■■□□□ 1.26
SHH-203ENST00000435425 ECM29Q5VYK3 1845 aa22.94■■□□□ 1.26
SHH-203ENST00000435425 TMEM88BA6NKF7 163 aa22.93■■□□□ 1.26
SHH-203ENST00000435425 CCDC158Q5M9N0 1113 aa22.93■■□□□ 1.26
SHH-203ENST00000435425 AACSQ86V21 672 aa22.93■■□□□ 1.26
SHH-203ENST00000435425 PRMT6Q96LA8 375 aaPredicted RBP22.93■■□□□ 1.26
SHH-203ENST00000435425 TLR7Q9NYK1 1049 aaKnown RBP22.93■■□□□ 1.26
SHH-203ENST00000435425 PCDHB15Q9Y5E8 787 aa22.93■■□□□ 1.26
SHH-203ENST00000435425 CRKP46108 304 aa22.92■■□□□ 1.26
SHH-203ENST00000435425 KIF1BPQ96EK5 621 aa22.92■■□□□ 1.26
SHH-203ENST00000435425 ZBED3Q96IU2 234 aaPredicted RBP22.92■■□□□ 1.26
SHH-203ENST00000435425 CLRN2A0PK11 232 aa22.91■■□□□ 1.26
SHH-203ENST00000435425 RAB11FIP3O75154 756 aa22.91■■□□□ 1.26
SHH-203ENST00000435425 CELF2O95319 508 aaKnown RBP22.91■■□□□ 1.26
SHH-203ENST00000435425 PI16Q6UXB8 463 aa22.91■■□□□ 1.26
SHH-203ENST00000435425 MTMR14Q8NCE2 650 aa22.91■■□□□ 1.26
SHH-203ENST00000435425 CREBZFQ9NS37 354 aa22.91■■□□□ 1.26
SHH-203ENST00000435425 HMG20BQ9P0W2 317 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms