RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 ZNF532Q9HCE3 1301 aa18.27■□□□□ 0.52
SCARF1-203ENST00000434376 MARCKSP29966 332 aaPredicted RBP18.27■□□□□ 0.52
SCARF1-203ENST00000434376 CHAF1AQ13111 956 aaPredicted RBP18.27■□□□□ 0.52
SCARF1-203ENST00000434376 ZMYM1Q5SVZ6 1142 aa18.27■□□□□ 0.52
SCARF1-203ENST00000434376 HMG20BQ9P0W2 317 aa18.27■□□□□ 0.52
SCARF1-203ENST00000434376 COL5A2P05997 1499 aaPredicted RBP18.27■□□□□ 0.52
SCARF1-203ENST00000434376 PRDM1O75626 825 aa18.27■□□□□ 0.51
SCARF1-203ENST00000434376 CCDC102BQ68D86 513 aa18.27■□□□□ 0.51
SCARF1-203ENST00000434376 LEO1Q8WVC0 666 aaPredicted RBP18.27■□□□□ 0.51
SCARF1-203ENST00000434376 AKAP2Q9Y2D5 859 aa18.27■□□□□ 0.51
SCARF1-203ENST00000434376 ADAMTSL3P82987 1691 aa18.27■□□□□ 0.51
SCARF1-203ENST00000434376 CRKLP46109 303 aaKnown RBP18.26■□□□□ 0.51
SCARF1-203ENST00000434376 PODXL2Q9NZ53 605 aa18.26■□□□□ 0.51
SCARF1-203ENST00000434376 UBN2Q6ZU65 1347 aa18.26■□□□□ 0.51
SCARF1-203ENST00000434376 ANO6Q4KMQ2 910 aa18.26■□□□□ 0.51
SCARF1-203ENST00000434376 HSP90AA4PQ58FG1 418 aa18.26■□□□□ 0.51
SCARF1-203ENST00000434376 ORC3Q9UBD5 711 aaPredicted RBP18.26■□□□□ 0.51
SCARF1-203ENST00000434376 CACNA1FO60840 1977 aa18.25■□□□□ 0.51
SCARF1-203ENST00000434376 PCCAP05165 728 aaPredicted RBP18.25■□□□□ 0.51
SCARF1-203ENST00000434376 GYG1P46976 350 aa18.25■□□□□ 0.51
SCARF1-203ENST00000434376 USP28Q96RU2 1077 aa18.25■□□□□ 0.51
SCARF1-203ENST00000434376 RAI14Q9P0K7 980 aa18.25■□□□□ 0.51
SCARF1-203ENST00000434376 LMTK3Q96Q04 1460 aa18.25■□□□□ 0.51
SCARF1-203ENST00000434376 A0A1B0GVL5 298 aa18.25■□□□□ 0.51
SCARF1-203ENST00000434376 MBD4O95243 580 aa18.25■□□□□ 0.51
SCARF1-203ENST00000434376 TDO2P48775 406 aa18.24■□□□□ 0.51
SCARF1-203ENST00000434376 MAP3K11Q16584 847 aa18.24■□□□□ 0.51
SCARF1-203ENST00000434376 PTPN21Q16825 1174 aa18.24■□□□□ 0.51
SCARF1-203ENST00000434376 SDR42E1Q8WUS8 393 aa18.24■□□□□ 0.51
SCARF1-203ENST00000434376 PGBD1Q96JS3 809 aa18.24■□□□□ 0.51
SCARF1-203ENST00000434376 SDF4Q9BRK5 362 aa18.24■□□□□ 0.51
SCARF1-203ENST00000434376 SPECC1Q5M775 1068 aa18.24■□□□□ 0.51
SCARF1-203ENST00000434376 NSUN7Q8NE18 718 aaKnown RBP18.24■□□□□ 0.51
SCARF1-203ENST00000434376 TRIM5Q9C035 493 aa18.24■□□□□ 0.51
SCARF1-203ENST00000434376 KDM3BQ7LBC6 1761 aa18.24■□□□□ 0.51
SCARF1-203ENST00000434376 BAZ2BQ9UIF8 2168 aaKnown RBP18.24■□□□□ 0.51
SCARF1-203ENST00000434376 LOC102724428A0A0B4J2F2 783 aa18.23■□□□□ 0.51
SCARF1-203ENST00000434376 PDIA3P30101 505 aaKnown RBP18.23■□□□□ 0.51
SCARF1-203ENST00000434376 SIK1P57059 783 aa18.23■□□□□ 0.51
SCARF1-203ENST00000434376 PPP4R3BQ5MIZ7 849 aa18.23■□□□□ 0.51
SCARF1-203ENST00000434376 CTDNEP1O95476 244 aa18.23■□□□□ 0.51
SCARF1-203ENST00000434376 ITPK1Q13572 414 aa18.23■□□□□ 0.51
SCARF1-203ENST00000434376 NOLC1Q14978 699 aaKnown RBP eCLIP18.23■□□□□ 0.51
SCARF1-203ENST00000434376 CYP2D7A0A087X1C5 515 aa18.23■□□□□ 0.51
SCARF1-203ENST00000434376 TFCP2L1Q9NZI6 479 aa18.23■□□□□ 0.51
SCARF1-203ENST00000434376 SRP68Q9UHB9 627 aaKnown RBP18.23■□□□□ 0.51
SCARF1-203ENST00000434376 C5P01031 1676 aa18.22■□□□□ 0.51
SCARF1-203ENST00000434376 CCAR1Q8IX12 1150 aaKnown RBP18.22■□□□□ 0.51
SCARF1-203ENST00000434376 MARCH10Q8NA82 808 aaPredicted RBP18.22■□□□□ 0.51
SCARF1-203ENST00000434376 C8orf76Q96K31 380 aa18.22■□□□□ 0.51
SCARF1-203ENST00000434376 NAPBQ9H115 298 aa18.22■□□□□ 0.51
SCARF1-203ENST00000434376 PRDM4Q9UKN5 801 aa18.22■□□□□ 0.51
SCARF1-203ENST00000434376 CCDC192P0DO97 292 aa18.21■□□□□ 0.51
SCARF1-203ENST00000434376 STK38Q15208 465 aa18.21■□□□□ 0.51
SCARF1-203ENST00000434376 CPDO75976 1380 aa18.21■□□□□ 0.51
SCARF1-203ENST00000434376 AP5Z1O43299 807 aa18.21■□□□□ 0.51
SCARF1-203ENST00000434376 PDE8BO95263 885 aa18.21■□□□□ 0.51
SCARF1-203ENST00000434376 TERF1P54274 439 aa18.21■□□□□ 0.51
SCARF1-203ENST00000434376 TYRO3Q06418 890 aa18.21■□□□□ 0.51
SCARF1-203ENST00000434376 FSIP1Q8NA03 581 aa18.21■□□□□ 0.51
SCARF1-203ENST00000434376 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.21■□□□□ 0.513e-6■■■■■ 34.1
SCARF1-203ENST00000434376 HELLSQ9NRZ9 838 aa18.21■□□□□ 0.51
SCARF1-203ENST00000434376 RIPOR2Q9Y4F9 1068 aa18.21■□□□□ 0.51
SCARF1-203ENST00000434376 LMO7Q8WWI1 1683 aa18.21■□□□□ 0.5
SCARF1-203ENST00000434376 RASGRF1Q13972 1273 aa18.2■□□□□ 0.5
SCARF1-203ENST00000434376 TBC1D10CQ8IV04 446 aa18.2■□□□□ 0.5
SCARF1-203ENST00000434376 APPBP2Q92624 585 aa18.2■□□□□ 0.5
SCARF1-203ENST00000434376 PDE8AO60658 829 aa18.2■□□□□ 0.5
SCARF1-203ENST00000434376 PDE6AP16499 860 aa18.2■□□□□ 0.5
SCARF1-203ENST00000434376 MCM5P33992 734 aa18.2■□□□□ 0.5
SCARF1-203ENST00000434376 GPR101Q96P66 508 aaPredicted RBP18.2■□□□□ 0.5
SCARF1-203ENST00000434376 TEX13AQ9BXU3 409 aaPredicted RBP18.2■□□□□ 0.5
SCARF1-203ENST00000434376 STRCP1A6NGW2 1772 aa18.2■□□□□ 0.5
SCARF1-203ENST00000434376 IGHMBP2P38935 993 aaKnown RBP18.2■□□□□ 0.5
SCARF1-203ENST00000434376 ZRSR1Q15695 479 aaKnown RBP18.2■□□□□ 0.5
SCARF1-203ENST00000434376 MTERF4Q7Z6M4 381 aaKnown RBP18.2■□□□□ 0.5
SCARF1-203ENST00000434376 SH3TC1Q8TE82 1336 aa18.19■□□□□ 0.5
SCARF1-203ENST00000434376 C3orf67Q6ZVT6 689 aa18.19■□□□□ 0.5
SCARF1-203ENST00000434376 FILIP1Q7Z7B0 1213 aa18.19■□□□□ 0.5
SCARF1-203ENST00000434376 NRBP1Q9UHY1 535 aa18.19■□□□□ 0.5
SCARF1-203ENST00000434376 IFIT3O14879 490 aaKnown RBP18.19■□□□□ 0.5
SCARF1-203ENST00000434376 NKX1-1Q15270 411 aaPredicted RBP18.19■□□□□ 0.5
SCARF1-203ENST00000434376 CCDC73Q6ZRK6 1079 aa18.19■□□□□ 0.5
SCARF1-203ENST00000434376 UTP14AQ9BVJ6 771 aaKnown RBP18.19■□□□□ 0.5
SCARF1-203ENST00000434376 SCAND2PQ9GZW5 306 aaPredicted RBP18.19■□□□□ 0.5
SCARF1-203ENST00000434376 CCDC87Q9NVE4 849 aa18.19■□□□□ 0.5
SCARF1-203ENST00000434376 KIF3AQ9Y496 699 aa18.19■□□□□ 0.5
SCARF1-203ENST00000434376 NCOA7Q8NI08 942 aa18.18■□□□□ 0.5
SCARF1-203ENST00000434376 CCDC94Q9BW85 323 aaPredicted RBP18.18■□□□□ 0.5
SCARF1-203ENST00000434376 BECN2A8MW95 431 aa18.18■□□□□ 0.5
SCARF1-203ENST00000434376 CYB5R4Q7L1T6 521 aa18.18■□□□□ 0.5
SCARF1-203ENST00000434376 SLC4A4Q9Y6R1 1079 aa18.18■□□□□ 0.5
SCARF1-203ENST00000434376 ZNF165P49910 485 aa18.18■□□□□ 0.5
SCARF1-203ENST00000434376 TMEM67Q5HYA8 995 aa18.18■□□□□ 0.5
SCARF1-203ENST00000434376 SYNE3Q6ZMZ3 975 aa18.18■□□□□ 0.5
SCARF1-203ENST00000434376 CLIC4Q9Y696 253 aa18.18■□□□□ 0.5
SCARF1-203ENST00000434376 LRMPQ12912 555 aa18.17■□□□□ 0.5
SCARF1-203ENST00000434376 USPL1Q5W0Q7 1092 aa18.17■□□□□ 0.5
SCARF1-203ENST00000434376 SLC26A6Q9BXS9 759 aa18.17■□□□□ 0.5
SCARF1-203ENST00000434376 EVX2Q03828 476 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms