RNA–Protein interactions for RNA: ENST00000428307.6

HDAC9-210, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,359 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-210ENST00000428307 LRRC4BQ9NT99 713 aa12.34□□□□□ -0.43
HDAC9-210ENST00000428307 RBM27Q9P2N5 1060 aaKnown RBP12.34□□□□□ -0.43
HDAC9-210ENST00000428307 MTMR6Q9Y217 621 aa12.34□□□□□ -0.43
HDAC9-210ENST00000428307 RTL9Q8NET4 1388 aa12.34□□□□□ -0.43
HDAC9-210ENST00000428307 MYH3P11055 1940 aa12.33□□□□□ -0.43
HDAC9-210ENST00000428307 F13A1P00488 732 aa12.33□□□□□ -0.44
HDAC9-210ENST00000428307 GYG1P46976 350 aa12.33□□□□□ -0.44
HDAC9-210ENST00000428307 EXOSC10Q01780 885 aaKnown RBP12.33□□□□□ -0.44
HDAC9-210ENST00000428307 APOBRQ0VD83 1088 aa12.33□□□□□ -0.44
HDAC9-210ENST00000428307 UBE3CQ15386 1083 aa12.33□□□□□ -0.44
HDAC9-210ENST00000428307 TRAPPC3LQ5T215 181 aa12.33□□□□□ -0.44
HDAC9-210ENST00000428307 L1TD1Q5T7N2 865 aaKnown RBP12.33□□□□□ -0.44
HDAC9-210ENST00000428307 TPTE2Q6XPS3 522 aa12.33□□□□□ -0.44
HDAC9-210ENST00000428307 MAGEB6Q8N7X4 407 aa12.33□□□□□ -0.44
HDAC9-210ENST00000428307 ZNF213O14771 459 aa12.33□□□□□ -0.44
HDAC9-210ENST00000428307 JAK2O60674 1132 aa12.33□□□□□ -0.44
HDAC9-210ENST00000428307 PPFIA3O75145 1194 aa12.33□□□□□ -0.44
HDAC9-210ENST00000428307 USP48Q86UV5 1035 aa12.33□□□□□ -0.44
HDAC9-210ENST00000428307 NYXQ9GZU5 481 aa12.33□□□□□ -0.44
HDAC9-210ENST00000428307 BSDC1Q9NW68 430 aaPredicted RBP12.33□□□□□ -0.44
HDAC9-210ENST00000428307 MINPP1Q9UNW1 487 aa12.33□□□□□ -0.44
HDAC9-210ENST00000428307 CNPY2Q9Y2B0 182 aa12.33□□□□□ -0.44
HDAC9-210ENST00000428307 RREB1Q92766 1687 aa12.32□□□□□ -0.44
HDAC9-210ENST00000428307 MAP3K12Q12852 859 aa12.32□□□□□ -0.44
HDAC9-210ENST00000428307 SLC10A5Q5PT55 438 aa12.32□□□□□ -0.44
HDAC9-210ENST00000428307 FERMT3Q86UX7 667 aa12.32□□□□□ -0.44
HDAC9-210ENST00000428307 GTF3C6Q969F1 213 aa12.32□□□□□ -0.44
HDAC9-210ENST00000428307 AIDAQ96BJ3 306 aa12.32□□□□□ -0.44
HDAC9-210ENST00000428307 DDX11Q96FC9 970 aa12.32□□□□□ -0.44
HDAC9-210ENST00000428307 GPHNQ9NQX3 736 aaPredicted RBP12.32□□□□□ -0.44
HDAC9-210ENST00000428307 TCRBV5S4A2TA0A5A2 114 aa12.32□□□□□ -0.44
HDAC9-210ENST00000428307 GADD45BO75293 160 aaPredicted RBP12.32□□□□□ -0.44
HDAC9-210ENST00000428307 RPS8P62241 208 aaKnown RBP12.32□□□□□ -0.44
HDAC9-210ENST00000428307 CCT2P78371 535 aaKnown RBP12.32□□□□□ -0.44
HDAC9-210ENST00000428307 SCRN1Q12765 414 aa12.32□□□□□ -0.44
HDAC9-210ENST00000428307 ABCF2Q9UG63 623 aa12.32□□□□□ -0.44
HDAC9-210ENST00000428307 CDC37L1Q7L3B6 337 aa12.31□□□□□ -0.44
HDAC9-210ENST00000428307 PANK2Q9BZ23 570 aa12.31□□□□□ -0.44
HDAC9-210ENST00000428307 BCL11BQ9C0K0 894 aaPredicted RBP12.31□□□□□ -0.44
HDAC9-210ENST00000428307 LRP2BPQ9P2M1 347 aa12.31□□□□□ -0.44
HDAC9-210ENST00000428307 COL5A3P25940 1745 aaPredicted RBP12.31□□□□□ -0.44
HDAC9-210ENST00000428307 SPEF2Q9C093 1822 aa12.31□□□□□ -0.44
HDAC9-210ENST00000428307 DNM1Q05193 864 aaKnown RBP12.3□□□□□ -0.44
HDAC9-210ENST00000428307 ZSCAN23Q3MJ62 389 aa12.3□□□□□ -0.44
HDAC9-210ENST00000428307 VPS37DQ86XT2 251 aa12.3□□□□□ -0.44
HDAC9-210ENST00000428307 STRBPQ96SI9 672 aaKnown RBP12.3□□□□□ -0.44
HDAC9-210ENST00000428307 GRPEL1Q9HAV7 217 aa12.3□□□□□ -0.44
HDAC9-210ENST00000428307 NCOA5Q9HCD5 579 aaKnown RBP12.3□□□□□ -0.44
HDAC9-210ENST00000428307 DENND2AQ9ULE3 1009 aa12.3□□□□□ -0.44
HDAC9-210ENST00000428307 ATP6V1DQ9Y5K8 247 aa12.3□□□□□ -0.44
HDAC9-210ENST00000428307 COL4A1P02462 1669 aa12.3□□□□□ -0.44
HDAC9-210ENST00000428307 THSD7AQ9UPZ6 1657 aa12.3□□□□□ -0.44
HDAC9-210ENST00000428307 CICQ96RK0 1608 aaPredicted RBP12.3□□□□□ -0.44
HDAC9-210ENST00000428307 FIBPO43427 364 aa12.3□□□□□ -0.44
HDAC9-210ENST00000428307 MBD4O95243 580 aa12.3□□□□□ -0.44
HDAC9-210ENST00000428307 PDCP20941 246 aa12.3□□□□□ -0.44
HDAC9-210ENST00000428307 FAM173BQ6P4H8 233 aa12.3□□□□□ -0.44
HDAC9-210ENST00000428307 ARMT1Q9H993 441 aa12.3□□□□□ -0.44
HDAC9-210ENST00000428307 TMEM63CQ9P1W3 806 aa12.3□□□□□ -0.44
HDAC9-210ENST00000428307 LRP5O75197 1615 aa12.3□□□□□ -0.44
HDAC9-210ENST00000428307 BTAF1O14981 1849 aa12.29□□□□□ -0.44
HDAC9-210ENST00000428307 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.29□□□□□ -0.44
HDAC9-210ENST00000428307 RGL2O15211 777 aa12.29□□□□□ -0.44
HDAC9-210ENST00000428307 TRIM37O94972 964 aa12.29□□□□□ -0.44
HDAC9-210ENST00000428307 RALYLQ86SE5 291 aaKnown RBP12.29□□□□□ -0.44
HDAC9-210ENST00000428307 MIGA1Q8NAN2 632 aa12.29□□□□□ -0.44
HDAC9-210ENST00000428307 AGXT2Q9BYV1 514 aa12.29□□□□□ -0.44
HDAC9-210ENST00000428307 DDX60Q8IY21 1712 aaKnown RBP12.29□□□□□ -0.44
HDAC9-210ENST00000428307 ATRNO75882 1429 aa12.29□□□□□ -0.44
HDAC9-210ENST00000428307 AKAP11Q9UKA4 1901 aa12.29□□□□□ -0.44
HDAC9-210ENST00000428307 PRC1O43663 620 aa12.29□□□□□ -0.44
HDAC9-210ENST00000428307 PFKFB2O60825 505 aa12.29□□□□□ -0.44
HDAC9-210ENST00000428307 KLRK1P26718 216 aa12.29□□□□□ -0.44
HDAC9-210ENST00000428307 PDIA3P30101 505 aaKnown RBP12.29□□□□□ -0.44
HDAC9-210ENST00000428307 MRE11P49959 708 aa12.29□□□□□ -0.44
HDAC9-210ENST00000428307 UBE4AQ14139 1066 aa12.29□□□□□ -0.44
HDAC9-210ENST00000428307 NFIXQ14938 502 aa12.29□□□□□ -0.44
HDAC9-210ENST00000428307 CAVIN4Q5BKX8 364 aa12.29□□□□□ -0.44
HDAC9-210ENST00000428307 NCOA7Q8NI08 942 aa12.29□□□□□ -0.44
HDAC9-210ENST00000428307 PRKAB2O43741 272 aa12.28□□□□□ -0.44
HDAC9-210ENST00000428307 MCM5P33992 734 aa12.28□□□□□ -0.44
HDAC9-210ENST00000428307 NKX2-3Q8TAU0 364 aa12.28□□□□□ -0.44
HDAC9-210ENST00000428307 FAM84BQ96KN1 310 aaPredicted RBP12.28□□□□□ -0.44
HDAC9-210ENST00000428307 NBPF3Q9H094 633 aa12.28□□□□□ -0.44
HDAC9-210ENST00000428307 INCENPQ9NQS7 918 aa12.28□□□□□ -0.44
HDAC9-210ENST00000428307 GNL3LQ9NVN8 582 aaKnown RBP12.28□□□□□ -0.44
HDAC9-210ENST00000428307 MBD3O95983 291 aa12.28□□□□□ -0.44
HDAC9-210ENST00000428307 FOSBP53539 338 aa12.28□□□□□ -0.44
HDAC9-210ENST00000428307 TRDNQ13061 729 aa12.28□□□□□ -0.44
HDAC9-210ENST00000428307 RAB11FIP4Q86YS3 637 aa12.28□□□□□ -0.44
HDAC9-210ENST00000428307 MB21D2Q8IYB1 491 aaPredicted RBP12.28□□□□□ -0.44
HDAC9-210ENST00000428307 FAM184AQ8NB25 1140 aa12.28□□□□□ -0.44
HDAC9-210ENST00000428307 TFCP2L1Q9NZI6 479 aa12.28□□□□□ -0.44
HDAC9-210ENST00000428307 RAI14Q9P0K7 980 aa12.28□□□□□ -0.44
HDAC9-210ENST00000428307 PATL2C9JE40 543 aaKnown RBP12.27□□□□□ -0.44
HDAC9-210ENST00000428307 TM4SF1P30408 202 aa12.27□□□□□ -0.44
HDAC9-210ENST00000428307 ANTXR2P58335 489 aa12.27□□□□□ -0.44
HDAC9-210ENST00000428307 KRT27Q7Z3Y8 459 aa12.27□□□□□ -0.44
HDAC9-210ENST00000428307 SLC51AQ86UW1 340 aa12.27□□□□□ -0.44
HDAC9-210ENST00000428307 TBC1D10CQ8IV04 446 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms