RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 UPF3BQ9BZI7 483 aaKnown RBP11.27□□□□□ -0.61
HMGB4-201ENST00000425537 POLD1P28340 1107 aa11.26□□□□□ -0.61
HMGB4-201ENST00000425537 MCAMP43121 646 aa11.26□□□□□ -0.61
HMGB4-201ENST00000425537 NFIXQ14938 502 aa11.26□□□□□ -0.61
HMGB4-201ENST00000425537 ZNF589Q86UQ0 364 aaPredicted RBP11.26□□□□□ -0.61
HMGB4-201ENST00000425537 VPS37DQ86XT2 251 aa11.26□□□□□ -0.61
HMGB4-201ENST00000425537 SPATA5Q8NB90 893 aa11.26□□□□□ -0.61
HMGB4-201ENST00000425537 TTC14Q96N46 770 aa11.26□□□□□ -0.61
HMGB4-201ENST00000425537 RPAP1Q9BWH6 1393 aaPredicted RBP11.26□□□□□ -0.61
HMGB4-201ENST00000425537 ZBTB22O15209 634 aa11.25□□□□□ -0.61
HMGB4-201ENST00000425537 KCNA4P22459 653 aa11.25□□□□□ -0.61
HMGB4-201ENST00000425537 PHKA1P46020 1223 aa11.25□□□□□ -0.61
HMGB4-201ENST00000425537 AK2P54819 239 aa11.25□□□□□ -0.61
HMGB4-201ENST00000425537 IMMTQ16891 758 aaKnown RBP11.25□□□□□ -0.61
HMGB4-201ENST00000425537 SKOR2Q2VWA4 1001 aaPredicted RBP11.25□□□□□ -0.61
HMGB4-201ENST00000425537 HELBQ8NG08 1087 aaPredicted RBP11.25□□□□□ -0.61
HMGB4-201ENST00000425537 SLC16A10Q8TF71 515 aa11.25□□□□□ -0.61
HMGB4-201ENST00000425537 NEK1Q96PY6 1258 aa11.25□□□□□ -0.61
HMGB4-201ENST00000425537 NDUFB9Q9Y6M9 179 aa11.25□□□□□ -0.61
HMGB4-201ENST00000425537 MAST3O60307 1309 aa11.25□□□□□ -0.61
HMGB4-201ENST00000425537 AKAP11Q9UKA4 1901 aa11.25□□□□□ -0.61
HMGB4-201ENST00000425537 POLRMTO00411 1230 aaKnown RBP11.24□□□□□ -0.61
HMGB4-201ENST00000425537 FRAT2O75474 233 aaPredicted RBP11.24□□□□□ -0.61
HMGB4-201ENST00000425537 IDH1O75874 414 aaKnown RBP11.24□□□□□ -0.61
HMGB4-201ENST00000425537 HSPD1P10809 573 aaKnown RBP11.24□□□□□ -0.61
HMGB4-201ENST00000425537 GNAT2P19087 354 aa11.24□□□□□ -0.61
HMGB4-201ENST00000425537 RPS6KB1P23443 525 aa11.24□□□□□ -0.61
HMGB4-201ENST00000425537 MCM4P33991 863 aa11.24□□□□□ -0.61
HMGB4-201ENST00000425537 ADD2P35612 726 aa11.24□□□□□ -0.61
HMGB4-201ENST00000425537 SLC9C2Q5TAH2 1124 aa11.24□□□□□ -0.61
HMGB4-201ENST00000425537 CLEC17AQ6ZS10 378 aa11.24□□□□□ -0.61
HMGB4-201ENST00000425537 TMC4Q7Z404 712 aa11.24□□□□□ -0.61
HMGB4-201ENST00000425537 NLGN2Q8NFZ4 835 aa11.24□□□□□ -0.61
HMGB4-201ENST00000425537 RPGRQ92834 1020 aaKnown RBP11.24□□□□□ -0.61
HMGB4-201ENST00000425537 FHDC1Q9C0D6 1143 aaPredicted RBP11.24□□□□□ -0.61
HMGB4-201ENST00000425537 FOXD4L1Q9NU39 408 aa11.24□□□□□ -0.61
HMGB4-201ENST00000425537 DENND2AQ9ULE3 1009 aa11.24□□□□□ -0.61
HMGB4-201ENST00000425537 MINPP1Q9UNW1 487 aa11.24□□□□□ -0.61
HMGB4-201ENST00000425537 PARP3Q9Y6F1 533 aa11.24□□□□□ -0.61
HMGB4-201ENST00000425537 PDS5AQ29RF7 1337 aaKnown RBP11.24□□□□□ -0.61
HMGB4-201ENST00000425537 CYP2E1P05181 493 aaPredicted RBP11.23□□□□□ -0.61
HMGB4-201ENST00000425537 FGD1P98174 961 aa11.23□□□□□ -0.61
HMGB4-201ENST00000425537 GRAPQ13588 217 aa11.23□□□□□ -0.61
HMGB4-201ENST00000425537 SCARF1Q14162 830 aa11.23□□□□□ -0.61
HMGB4-201ENST00000425537 NLGN1Q8N2Q7 840 aa11.23□□□□□ -0.61
HMGB4-201ENST00000425537 GRAPLQ8TC17 118 aaPredicted RBP11.23□□□□□ -0.61
HMGB4-201ENST00000425537 RBM17Q96I25 401 aaKnown RBP11.23□□□□□ -0.61
HMGB4-201ENST00000425537 A0A1B0GUL6 1792 aa11.23□□□□□ -0.61
HMGB4-201ENST00000425537 DOCK2Q92608 1830 aa11.23□□□□□ -0.61
HMGB4-201ENST00000425537 ZNF804BA4D1E1 1349 aa11.22□□□□□ -0.61
HMGB4-201ENST00000425537 ZMYM6O95789 1325 aa11.22□□□□□ -0.61
HMGB4-201ENST00000425537 SERPINB2P05120 415 aa11.22□□□□□ -0.61
HMGB4-201ENST00000425537 PDE6AP16499 860 aa11.22□□□□□ -0.61
HMGB4-201ENST00000425537 PDCP20941 246 aa11.22□□□□□ -0.61
HMGB4-201ENST00000425537 TM4SF1P30408 202 aa11.22□□□□□ -0.61
HMGB4-201ENST00000425537 RASGRF1Q13972 1273 aa11.22□□□□□ -0.61
HMGB4-201ENST00000425537 ADCK5Q3MIX3 580 aa11.22□□□□□ -0.61
HMGB4-201ENST00000425537 CCDC129Q6ZRS4 1044 aa11.22□□□□□ -0.61
HMGB4-201ENST00000425537 TNPO1Q92973 898 aaKnown RBP11.22□□□□□ -0.61
HMGB4-201ENST00000425537 OSBP2Q969R2 916 aa11.22□□□□□ -0.61
HMGB4-201ENST00000425537 AIDAQ96BJ3 306 aa11.22□□□□□ -0.61
HMGB4-201ENST00000425537 SEC62Q99442 399 aaKnown RBP11.22□□□□□ -0.61
HMGB4-201ENST00000425537 NACAP1Q9BZK3 213 aa11.22□□□□□ -0.61
HMGB4-201ENST00000425537 WDR33Q9C0J8 1336 aaKnown RBP11.22□□□□□ -0.61
HMGB4-201ENST00000425537 TNRC6CQ9HCJ0 1690 aaKnown RBP11.22□□□□□ -0.61
HMGB4-201ENST00000425537 LRP2BPQ9P2M1 347 aa11.22□□□□□ -0.61
HMGB4-201ENST00000425537 SMC3Q9UQE7 1217 aa11.22□□□□□ -0.61
HMGB4-201ENST00000425537 LEMD3Q9Y2U8 911 aa11.22□□□□□ -0.61
HMGB4-201ENST00000425537 KIF3AQ9Y496 699 aa11.22□□□□□ -0.61
HMGB4-201ENST00000425537 WDR19Q8NEZ3 1342 aa11.21□□□□□ -0.61
HMGB4-201ENST00000425537 M0R2C6 588 aa11.21□□□□□ -0.61
HMGB4-201ENST00000425537 GPAA1O43292 621 aa11.21□□□□□ -0.61
HMGB4-201ENST00000425537 CYP21A2P08686 494 aa11.21□□□□□ -0.61
HMGB4-201ENST00000425537 TRDNQ13061 729 aa11.21□□□□□ -0.61
HMGB4-201ENST00000425537 SPTY2D1Q68D10 685 aaPredicted RBP11.21□□□□□ -0.61
HMGB4-201ENST00000425537 NOL8Q76FK4 1167 aaKnown RBP11.21□□□□□ -0.61
HMGB4-201ENST00000425537 DHX32Q7L7V1 743 aaKnown RBP11.21□□□□□ -0.61
HMGB4-201ENST00000425537 ZGPATQ8N5A5 531 aaKnown RBP11.21□□□□□ -0.61
HMGB4-201ENST00000425537 CELF1Q92879 486 aaKnown RBP11.21□□□□□ -0.61
HMGB4-201ENST00000425537 PIH1D3Q9NQM4 214 aaKnown RBP11.21□□□□□ -0.61
HMGB4-201ENST00000425537 ATP6V1DQ9Y5K8 247 aa11.21□□□□□ -0.61
HMGB4-201ENST00000425537 ANKRD31Q8N7Z5 1873 aa11.21□□□□□ -0.62
HMGB4-201ENST00000425537 XDHP47989 1333 aa11.2□□□□□ -0.62
HMGB4-201ENST00000425537 ZNF532Q9HCE3 1301 aa11.2□□□□□ -0.62
HMGB4-201ENST00000425537 ZNF213O14771 459 aa11.2□□□□□ -0.62
HMGB4-201ENST00000425537 BBOX1O75936 387 aa11.2□□□□□ -0.62
HMGB4-201ENST00000425537 CHRNA5P30532 468 aa11.2□□□□□ -0.62
HMGB4-201ENST00000425537 HIBADHP31937 336 aaKnown RBP11.2□□□□□ -0.62
HMGB4-201ENST00000425537 BCAMP50895 628 aa11.2□□□□□ -0.62
HMGB4-201ENST00000425537 C1QBPQ07021 282 aaKnown RBP11.2□□□□□ -0.62
HMGB4-201ENST00000425537 ALX1Q15699 326 aa11.2□□□□□ -0.62
HMGB4-201ENST00000425537 PRR5LQ6MZQ0 368 aa11.2□□□□□ -0.62
HMGB4-201ENST00000425537 PI16Q6UXB8 463 aa11.2□□□□□ -0.62
HMGB4-201ENST00000425537 C3orf67Q6ZVT6 689 aa11.2□□□□□ -0.62
HMGB4-201ENST00000425537 RALYLQ86SE5 291 aaKnown RBP11.2□□□□□ -0.62
HMGB4-201ENST00000425537 CRAMP1Q96RY5 1269 aa11.2□□□□□ -0.62
HMGB4-201ENST00000425537 COL11A2P13942 1736 aaPredicted RBP11.2□□□□□ -0.62
HMGB4-201ENST00000425537 KIAA1551Q9HCM1 1747 aa11.2□□□□□ -0.62
HMGB4-201ENST00000425537 NRXN2Q9P2S2 1712 aa11.2□□□□□ -0.62
HMGB4-201ENST00000425537 C10orf71Q711Q0 1435 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms