RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 HNRNPCP07910 306 aaKnown RBP eCLIP3.87□□□□□ -1.79
SYNE1-212ENST00000423061 ATP6V1G1O75348 118 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 TOPBP1Q92547 1522 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 ZKSCAN1P17029 563 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 DESP17661 470 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 PPP2R1AP30153 589 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 DNA2P51530 1060 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 SMTNP53814 917 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 MAF1Q9H063 256 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 PFDN4Q9NQP4 134 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 COQ9O75208 318 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 PSMC4P43686 418 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 CTCFP49711 727 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 CADPS2Q86UW7 1296 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 FAXDC2Q96IV6 333 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 CTDP1Q9Y5B0 961 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 RPRD2Q5VT52 1461 aaKnown RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 ZSCAN22P10073 491 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 PREPLQ4J6C6 727 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 SLC4A10Q6U841 1118 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 ZNF365Q70YC5 407 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 NUTM1Q86Y26 1132 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 SFI1A8K8P3 1242 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 STX1AQ16623 288 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 OTUD7AQ8TE49 926 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 TPCN1Q9ULQ1 816 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 MVPQ14764 893 aaKnown RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 RUNDC1Q96C34 613 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 STK38LQ9Y2H1 464 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 UGGT2Q9NYU1 1516 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 ABCF2Q9UG63 623 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 TBC1D8O95759 1140 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 FAM200BP0CF97 657 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 TOP1P11387 765 aaKnown RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 ZMAT2Q96NC0 199 aaKnown RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 TEX13AQ9BXU3 409 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 SUGCTQ9HAC7 445 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 MRGBPQ9NV56 204 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 RAD54L2Q9Y4B4 1467 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 RABGGTAQ92696 567 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 SRCIN1Q9C0H9 1055 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 ARIH1Q9Y4X5 557 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 ANKRD13AQ8IZ07 590 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 STX6O43752 255 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 TSPAN18Q96SJ8 248 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 CCDC160A6NGH7 325 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 TSPY2A6NKD2 308 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 CEP104O60308 925 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 TSPY3P0CV98 308 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 TSPY8P0CW00 308 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 TSPY1Q01534 308 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 PPFIA1Q13136 1202 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 GKAP1Q5VSY0 366 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 LRRC8AQ8IWT6 810 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 FSIP1Q8NA03 581 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 FAM71BQ8TC56 605 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 STAG1Q8WVM7 1258 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 MAP4K4O95819 1239 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 MMADHCQ9H3L0 296 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 BACH1O14867 736 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 TADA3O75528 432 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 SLC4A7Q9Y6M7 1214 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 RBM47A0AV96 593 aaKnown RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 CTAGE9A4FU28 777 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 LUC7L3O95232 432 aaKnown RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 CLIC6Q96NY7 704 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 GRIN2BQ13224 1484 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 ASXL1Q8IXJ9 1541 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 EFCAB8A8MWE9 144 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 C17orf50Q8WW18 174 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 SOS1Q07889 1333 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 ZMYM4Q5VZL5 1548 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 OLFM4Q6UX06 510 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 CCAR1Q8IX12 1150 aaKnown RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 CLASRPQ8N2M8 674 aaKnown RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 BZW2Q9Y6E2 419 aaKnown RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 RAPGEF6Q8TEU7 1601 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 DDIT3P35638 169 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 ABL2P42684 1182 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 TMED1Q13445 227 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 PPP1R7Q15435 360 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 LMNTD2Q8IXW0 634 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 NFATC2IPQ8NCF5 419 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 NSMCE1Q8WV22 266 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 CCDC47Q96A33 483 aaKnown RBP3.86□□□□□ -1.79
SYNE1-212ENST00000423061 HSP90AA4PQ58FG1 418 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 TRAIPQ9BWF2 469 aa3.86□□□□□ -1.79
SYNE1-212ENST00000423061 ME1P48163 572 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 EHD4Q9H223 541 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 PDCP20941 246 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 UHMK1Q8TAS1 419 aaKnown RBP3.85□□□□□ -1.79
SYNE1-212ENST00000423061 ZNF483Q8TF39 744 aaPredicted RBP3.85□□□□□ -1.79
SYNE1-212ENST00000423061 CENPOQ9BU64 300 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 DMRT2Q9Y5R5 561 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 CCDC144BQ3MJ40 725 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 TRIM50Q86XT4 487 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 CCDC144CPQ8IYA2 1237 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 FAM114A2Q9NRY5 505 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 BLOC1S6Q9UL45 172 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 NEXNQ0ZGT2 675 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms