RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.23□□□□□ -1.25
HMGB3-202ENST00000419110 RUFY2Q8WXA3 655 aa7.23□□□□□ -1.25
HMGB3-202ENST00000419110 TBC1D32Q96NH3 1257 aa7.23□□□□□ -1.25
HMGB3-202ENST00000419110 CAMKK2Q96RR4 588 aa7.23□□□□□ -1.25
HMGB3-202ENST00000419110 DNAJC2Q99543 621 aaKnown RBP7.23□□□□□ -1.25
HMGB3-202ENST00000419110 PUS3Q9BZE2 481 aaKnown RBP7.23□□□□□ -1.25
HMGB3-202ENST00000419110 PARP3Q9Y6F1 533 aa7.23□□□□□ -1.25
HMGB3-202ENST00000419110 TIAM2Q8IVF5 1701 aa7.23□□□□□ -1.25
HMGB3-202ENST00000419110 ZNF646O15015 1829 aaPredicted RBP7.22□□□□□ -1.25
HMGB3-202ENST00000419110 ECM29Q5VYK3 1845 aa7.22□□□□□ -1.25
HMGB3-202ENST00000419110 PDE8BO95263 885 aa7.22□□□□□ -1.25
HMGB3-202ENST00000419110 IFIT1P09914 478 aaKnown RBP7.22□□□□□ -1.25
HMGB3-202ENST00000419110 UQCRFS1P1P0C7P4 283 aa7.22□□□□□ -1.25
HMGB3-202ENST00000419110 GRAPQ13588 217 aa7.22□□□□□ -1.25
HMGB3-202ENST00000419110 SLC15A2Q16348 729 aa7.22□□□□□ -1.25
HMGB3-202ENST00000419110 TMEM92Q6UXU6 159 aa7.22□□□□□ -1.25
HMGB3-202ENST00000419110 COL23A1Q86Y22 540 aaPredicted RBP7.22□□□□□ -1.25
HMGB3-202ENST00000419110 GRAPLQ8TC17 118 aaPredicted RBP7.22□□□□□ -1.25
HMGB3-202ENST00000419110 LPIN2Q92539 896 aa7.22□□□□□ -1.25
HMGB3-202ENST00000419110 ANKRD2Q9GZV1 360 aa7.22□□□□□ -1.25
HMGB3-202ENST00000419110 SEC31BQ9NQW1 1179 aa7.22□□□□□ -1.25
HMGB3-202ENST00000419110 RIPOR2Q9Y4F9 1068 aa7.22□□□□□ -1.25
HMGB3-202ENST00000419110 STK24Q9Y6E0 443 aa7.22□□□□□ -1.25
HMGB3-202ENST00000419110 MYH2Q9UKX2 1941 aa7.22□□□□□ -1.25
HMGB3-202ENST00000419110 SLX4Q8IY92 1834 aa7.22□□□□□ -1.25
HMGB3-202ENST00000419110 MED23Q9ULK4 1368 aa7.21□□□□□ -1.25
HMGB3-202ENST00000419110 RIMBP2O15034 1052 aa7.21□□□□□ -1.26
HMGB3-202ENST00000419110 MAP4K4O95819 1239 aaPredicted RBP7.21□□□□□ -1.26
HMGB3-202ENST00000419110 MMP10P09238 476 aa7.21□□□□□ -1.26
HMGB3-202ENST00000419110 CHRNDQ07001 517 aa7.21□□□□□ -1.26
HMGB3-202ENST00000419110 MMRN1Q13201 1228 aa7.21□□□□□ -1.26
HMGB3-202ENST00000419110 MSL1Q68DK7 614 aa7.21□□□□□ -1.26
HMGB3-202ENST00000419110 TMC4Q7Z404 712 aa7.21□□□□□ -1.26
HMGB3-202ENST00000419110 XAGE2Q96GT9 111 aa7.21□□□□□ -1.26
HMGB3-202ENST00000419110 RBM17Q96I25 401 aaKnown RBP7.21□□□□□ -1.26
HMGB3-202ENST00000419110 HAUS7Q99871 368 aa7.21□□□□□ -1.26
HMGB3-202ENST00000419110 ESYT1Q9BSJ8 1104 aa7.21□□□□□ -1.26
HMGB3-202ENST00000419110 C22orf23Q9BZE7 217 aa7.21□□□□□ -1.26
HMGB3-202ENST00000419110 BOLA2Q9H3K6 86 aa7.21□□□□□ -1.26
HMGB3-202ENST00000419110 BSDC1Q9NW68 430 aaPredicted RBP7.21□□□□□ -1.26
HMGB3-202ENST00000419110 PAG1Q9NWQ8 432 aa7.21□□□□□ -1.26
HMGB3-202ENST00000419110 DDX60LQ5H9U9 1706 aaKnown RBP7.21□□□□□ -1.26
HMGB3-202ENST00000419110 COL1A1P02452 1464 aaPredicted RBP7.2□□□□□ -1.26
HMGB3-202ENST00000419110 STK25O00506 426 aa7.2□□□□□ -1.26
HMGB3-202ENST00000419110 EPB41L2O43491 1005 aaKnown RBP7.2□□□□□ -1.26
HMGB3-202ENST00000419110 CHMLP26374 656 aa7.2□□□□□ -1.26
HMGB3-202ENST00000419110 ARID4AP29374 1257 aaPredicted RBP7.2□□□□□ -1.26
HMGB3-202ENST00000419110 TM4SF1P30408 202 aa7.2□□□□□ -1.26
HMGB3-202ENST00000419110 ADORA1P30542 326 aa7.2□□□□□ -1.26
HMGB3-202ENST00000419110 BECN1Q14457 450 aa7.2□□□□□ -1.26
HMGB3-202ENST00000419110 TTF1Q15361 905 aaPredicted RBP7.2□□□□□ -1.26
HMGB3-202ENST00000419110 CRY2Q49AN0 593 aa7.2□□□□□ -1.26
HMGB3-202ENST00000419110 KIAA1211Q6ZU35 1233 aa7.2□□□□□ -1.26
HMGB3-202ENST00000419110 TICAM2Q86XR7 235 aa7.2□□□□□ -1.26
HMGB3-202ENST00000419110 CCDC24Q8N4L8 307 aa7.2□□□□□ -1.26
HMGB3-202ENST00000419110 KBTBD3Q8NAB2 608 aa7.2□□□□□ -1.26
HMGB3-202ENST00000419110 CELF1Q92879 486 aaKnown RBP7.2□□□□□ -1.26
HMGB3-202ENST00000419110 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.2□□□□□ -1.26
HMGB3-202ENST00000419110 ANO2Q9NQ90 1003 aa7.2□□□□□ -1.26
HMGB3-202ENST00000419110 GNL3LQ9NVN8 582 aaKnown RBP7.2□□□□□ -1.26
HMGB3-202ENST00000419110 DAXXQ9UER7 740 aaPredicted RBP7.2□□□□□ -1.26
HMGB3-202ENST00000419110 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.2□□□□□ -1.26
HMGB3-202ENST00000419110 BAZ2AQ9UIF9 1905 aaKnown RBP7.2□□□□□ -1.26
HMGB3-202ENST00000419110 XDHP47989 1333 aa7.2□□□□□ -1.26
HMGB3-202ENST00000419110 FER1L6Q2WGJ9 1857 aa7.19□□□□□ -1.26
HMGB3-202ENST00000419110 GOLIM4O00461 696 aa7.19□□□□□ -1.26
HMGB3-202ENST00000419110 PPEF1O14829 653 aaPredicted RBP7.19□□□□□ -1.26
HMGB3-202ENST00000419110 FGFR2P21802 821 aa7.19□□□□□ -1.26
HMGB3-202ENST00000419110 PDE6BP35913 854 aa7.19□□□□□ -1.26
HMGB3-202ENST00000419110 RPS8P62241 208 aaKnown RBP7.19□□□□□ -1.26
HMGB3-202ENST00000419110 UBE4AQ14139 1066 aa7.19□□□□□ -1.26
HMGB3-202ENST00000419110 ZSCAN25Q6NSZ9 544 aa7.19□□□□□ -1.26
HMGB3-202ENST00000419110 DEFB132Q7Z7B7 95 aa7.19□□□□□ -1.26
HMGB3-202ENST00000419110 VPS37DQ86XT2 251 aa7.19□□□□□ -1.26
HMGB3-202ENST00000419110 FBXO22Q8NEZ5 403 aa7.19□□□□□ -1.26
HMGB3-202ENST00000419110 ZNF512BQ96KM6 892 aaPredicted RBP7.19□□□□□ -1.26
HMGB3-202ENST00000419110 BRIP1Q9BX63 1249 aa7.19□□□□□ -1.26
HMGB3-202ENST00000419110 CCDC171Q6TFL3 1326 aa7.19□□□□□ -1.26
HMGB3-202ENST00000419110 ADAMTSL1Q8N6G6 1762 aa7.18□□□□□ -1.26
HMGB3-202ENST00000419110 SGSM2O43147 1006 aa7.18□□□□□ -1.26
HMGB3-202ENST00000419110 TAF5LO75529 589 aa7.18□□□□□ -1.26
HMGB3-202ENST00000419110 ZFYP08048 801 aaPredicted RBP7.18□□□□□ -1.26
HMGB3-202ENST00000419110 NPR1P16066 1061 aa7.18□□□□□ -1.26
HMGB3-202ENST00000419110 PHKA1P46020 1223 aa7.18□□□□□ -1.26
HMGB3-202ENST00000419110 RBM25P49756 843 aaKnown RBP7.18□□□□□ -1.26
HMGB3-202ENST00000419110 TIMM10P62072 90 aa7.18□□□□□ -1.26
HMGB3-202ENST00000419110 NMIQ13287 307 aaPredicted RBP7.18□□□□□ -1.26
HMGB3-202ENST00000419110 CAVIN4Q5BKX8 364 aa7.18□□□□□ -1.26
HMGB3-202ENST00000419110 CCDC102BQ68D86 513 aa7.18□□□□□ -1.26
HMGB3-202ENST00000419110 CWC27Q6UX04 472 aaKnown RBP7.18□□□□□ -1.26
HMGB3-202ENST00000419110 HSCBQ8IWL3 235 aa7.18□□□□□ -1.26
HMGB3-202ENST00000419110 HELBQ8NG08 1087 aaPredicted RBP7.18□□□□□ -1.26
HMGB3-202ENST00000419110 SLC16A10Q8TF71 515 aa7.18□□□□□ -1.26
HMGB3-202ENST00000419110 CRAMP1Q96RY5 1269 aa7.18□□□□□ -1.26
HMGB3-202ENST00000419110 KRTAP3-3Q9BYR6 98 aa7.18□□□□□ -1.26
HMGB3-202ENST00000419110 KRTAP3-2Q9BYR7 98 aa7.18□□□□□ -1.26
HMGB3-202ENST00000419110 TMX4Q9H1E5 349 aaPredicted RBP7.18□□□□□ -1.26
HMGB3-202ENST00000419110 MYH1P12882 1939 aa7.18□□□□□ -1.26
HMGB3-202ENST00000419110 ZNF804BA4D1E1 1349 aa7.18□□□□□ -1.26
HMGB3-202ENST00000419110 PDS5AQ29RF7 1337 aaKnown RBP7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms