RNA–Protein interactions for RNA: ENST00000410080.5

PRPF40A-202, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PRPF40A, Length 8,048 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-202ENST00000410080 C4orf50Q6ZRC1 276 aa12.68□□□□□ -0.38
PRPF40A-202ENST00000410080 MIGA1Q8NAN2 632 aa12.68□□□□□ -0.38
PRPF40A-202ENST00000410080 TCIRG1Q13488 830 aa12.68□□□□□ -0.38
PRPF40A-202ENST00000410080 FAM47CQ5HY64 1035 aa12.68□□□□□ -0.38
PRPF40A-202ENST00000410080 FNBP4Q8N3X1 1017 aaPredicted RBP12.68□□□□□ -0.38
PRPF40A-202ENST00000410080 AFG3L2Q9Y4W6 797 aa12.68□□□□□ -0.38
PRPF40A-202ENST00000410080 ATP2A2P16615 1042 aaKnown RBP12.68□□□□□ -0.38
PRPF40A-202ENST00000410080 RPUSD2Q8IZ73 545 aaKnown RBP12.68□□□□□ -0.38
PRPF40A-202ENST00000410080 NEK1Q96PY6 1258 aa12.68□□□□□ -0.38
PRPF40A-202ENST00000410080 IRAK4Q9NWZ3 460 aa12.68□□□□□ -0.38
PRPF40A-202ENST00000410080 STK25O00506 426 aa12.68□□□□□ -0.38
PRPF40A-202ENST00000410080 GIPC1O14908 333 aa12.68□□□□□ -0.38
PRPF40A-202ENST00000410080 ALG1Q9BT22 464 aa12.68□□□□□ -0.38
PRPF40A-202ENST00000410080 ATP6V0A2Q9Y487 856 aa12.68□□□□□ -0.38
PRPF40A-202ENST00000410080 KIAA1524Q8TCG1 905 aa12.68□□□□□ -0.38
PRPF40A-202ENST00000410080 BIRC3Q13489 604 aa12.68□□□□□ -0.38
PRPF40A-202ENST00000410080 MRRFQ96E11 262 aaKnown RBP12.68□□□□□ -0.38
PRPF40A-202ENST00000410080 LAMC3Q9Y6N6 1575 aa12.68□□□□□ -0.38
PRPF40A-202ENST00000410080 SPDYE16A6NNV3 312 aaPredicted RBP12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 KIF2AO00139 706 aaPredicted RBP12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 UBASH3AP57075 661 aa12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 SPDYE2Q495Y8 402 aa12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 VPS52Q8N1B4 723 aa12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 RBM17Q96I25 401 aaKnown RBP12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 LIMCH1Q9UPQ0 1083 aa12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 LMTK3Q96Q04 1460 aa12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 SNRPA1P09661 255 aaKnown RBP12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 NSRP1Q9H0G5 558 aaKnown RBP12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 GPCPD1Q9NPB8 672 aa12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 PTPRCP08575 1304 aa12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 DENND4BO75064 1496 aaPredicted RBP12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 SNW1Q13573 536 aaKnown RBP12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 LDHBP07195 334 aaKnown RBP12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 MARCKSP29966 332 aaPredicted RBP12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 WDR44Q5JSH3 913 aa12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 SEPT14Q6ZU15 432 aa12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 ANKS4BQ8N8V4 417 aa12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 KCNK9Q9NPC2 374 aa12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 TRIM27P14373 513 aa12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 PRPHP41219 470 aa12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 CCDC102BQ68D86 513 aa12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 UIMC1Q96RL1 719 aa12.67□□□□□ -0.38
PRPF40A-202ENST00000410080 CAPZA3Q96KX2 299 aa12.66□□□□□ -0.38
PRPF40A-202ENST00000410080 GRIN2AQ12879 1464 aa12.66□□□□□ -0.38
PRPF40A-202ENST00000410080 KLF18A0A0U1RQI7 1052 aa12.66□□□□□ -0.38
PRPF40A-202ENST00000410080 GNPATO15228 680 aa12.66□□□□□ -0.38
PRPF40A-202ENST00000410080 TRPC3Q13507 836 aa12.66□□□□□ -0.38
PRPF40A-202ENST00000410080 SMCR8Q8TEV9 937 aaPredicted RBP12.66□□□□□ -0.38
PRPF40A-202ENST00000410080 UQCRFS1P1P0C7P4 283 aa12.66□□□□□ -0.38
PRPF40A-202ENST00000410080 CHST3Q7LGC8 479 aa12.66□□□□□ -0.38
PRPF40A-202ENST00000410080 DZIP3Q86Y13 1208 aaKnown RBP12.66□□□□□ -0.38
PRPF40A-202ENST00000410080 DISP3Q9P2K9 1392 aa12.66□□□□□ -0.38
PRPF40A-202ENST00000410080 STX10O60499 249 aa12.66□□□□□ -0.38
PRPF40A-202ENST00000410080 KRT2P35908 639 aa12.66□□□□□ -0.38
PRPF40A-202ENST00000410080 MYCP01106 439 aaPredicted RBP12.66□□□□□ -0.38
PRPF40A-202ENST00000410080 LRRC59Q96AG4 307 aaKnown RBP12.66□□□□□ -0.38
PRPF40A-202ENST00000410080 RAPGEF1Q13905 1077 aa12.66□□□□□ -0.38
PRPF40A-202ENST00000410080 DIXDC1Q155Q3 683 aa12.66□□□□□ -0.38
PRPF40A-202ENST00000410080 PLEKHH1Q9ULM0 1364 aa12.66□□□□□ -0.38
PRPF40A-202ENST00000410080 SSFA2P28290 1259 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 STRN3Q13033 797 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 PPIP5K1Q6PFW1 1433 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 TTC21BQ7Z4L5 1316 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 PPME1Q9Y570 386 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 GOLGA6L9A6NEM1 432 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 CADPS2Q86UW7 1296 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 RNF169Q8NCN4 708 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 PIK3R4Q99570 1358 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 XRCC6P12956 609 aaKnown RBP eCLIP12.65□□□□□ -0.386e-6■■■■■ 31.4
PRPF40A-202ENST00000410080 ANKRD13DQ6ZTN6 518 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 METTL13Q8N6R0 699 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 SORBS3O60504 671 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 CCNT1O60563 726 aaKnown RBP12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 MCM4P33991 863 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 SARNPP82979 210 aaKnown RBP12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 NSMCE1Q8WV22 266 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 CNNM2Q9H8M5 875 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 PRXQ9BXM0 1461 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 IFRD2Q12894 506 aaPredicted RBP12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 TPTE2Q6XPS3 522 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 CDAN1Q8IWY9 1227 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 XAGE3Q8WTP9 111 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 HAUS2Q9NVX0 235 aa12.65□□□□□ -0.38
PRPF40A-202ENST00000410080 USH1GQ495M9 461 aa12.65□□□□□ -0.39
PRPF40A-202ENST00000410080 EHBP1Q8NDI1 1231 aa12.65□□□□□ -0.39
PRPF40A-202ENST00000410080 NEK11Q8NG66 645 aa12.65□□□□□ -0.39
PRPF40A-202ENST00000410080 SEC62Q99442 399 aaKnown RBP12.65□□□□□ -0.39
PRPF40A-202ENST00000410080 RIOK1Q9BRS2 568 aaKnown RBP12.65□□□□□ -0.39
PRPF40A-202ENST00000410080 TNRQ92752 1358 aa12.64□□□□□ -0.39
PRPF40A-202ENST00000410080 HSPA1LP34931 641 aa12.64□□□□□ -0.39
PRPF40A-202ENST00000410080 TRAPPC3LQ5T215 181 aa12.64□□□□□ -0.39
PRPF40A-202ENST00000410080 ARHGEF10LQ9HCE6 1279 aa12.64□□□□□ -0.39
PRPF40A-202ENST00000410080 THOC2Q8NI27 1593 aaKnown RBP12.64□□□□□ -0.39
PRPF40A-202ENST00000410080 PPP4R4Q6NUP7 873 aa12.64□□□□□ -0.39
PRPF40A-202ENST00000410080 STK32BQ9NY57 414 aa12.64□□□□□ -0.39
PRPF40A-202ENST00000410080 NCKAP5LQ9HCH0 1330 aa12.64□□□□□ -0.39
PRPF40A-202ENST00000410080 KIF22Q14807 665 aa12.64□□□□□ -0.39
PRPF40A-202ENST00000410080 ERCC3P19447 782 aa12.64□□□□□ -0.39
PRPF40A-202ENST00000410080 CYLC1P35663 651 aaPredicted RBP12.64□□□□□ -0.39
PRPF40A-202ENST00000410080 MSL1Q68DK7 614 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms