RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 GDAP1L1Q96MZ0 367 aa14.48□□□□□ -0.09
COL6A3-206ENST00000409809 THOC2Q8NI27 1593 aaKnown RBP14.48□□□□□ -0.09
COL6A3-206ENST00000409809 PHACTR2O75167 634 aa14.48□□□□□ -0.09
COL6A3-206ENST00000409809 SRGAP1Q7Z6B7 1085 aa14.48□□□□□ -0.09
COL6A3-206ENST00000409809 PPP1R7Q15435 360 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 CFAP221Q4G0U5 840 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 NEK11Q8NG66 645 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 P3H4Q92791 437 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 BICD1Q96G01 975 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 HMOX1P09601 288 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 RILPL1Q5EBL4 403 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 ZNF569Q5MCW4 686 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 AOPEPQ8N6M6 819 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 NAPBQ9H115 298 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 PTGS1P23219 599 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 DENND2CQ68D51 928 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 SYT10Q6XYQ8 523 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 ZNF692Q9BU19 519 aaPredicted RBP14.47□□□□□ -0.09
COL6A3-206ENST00000409809 SCOCQ9UIL1 159 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 C9orf84Q5VXU9 1444 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 MYL5Q02045 173 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 INF2Q27J81 1249 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 NECTIN2Q92692 538 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 TMX3Q96JJ7 454 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 CREB3O43889 395 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 IDEP14735 1019 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 ESRRGP62508 458 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 CCDC122Q5T0U0 273 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 GSTA5Q7RTV2 222 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 CCDC144CPQ8IYA2 1237 aa14.47□□□□□ -0.09
COL6A3-206ENST00000409809 ICE2Q659A1 982 aa14.46□□□□□ -0.09
COL6A3-206ENST00000409809 WHAMMQ8TF30 809 aa14.46□□□□□ -0.09
COL6A3-206ENST00000409809 RHOXF2BP0C7M4 288 aa14.46□□□□□ -0.09
COL6A3-206ENST00000409809 STAT6P42226 847 aa14.46□□□□□ -0.09
COL6A3-206ENST00000409809 NOX5Q96PH1 765 aa14.46□□□□□ -0.09
COL6A3-206ENST00000409809 RHOXF2Q9BQY4 288 aa14.46□□□□□ -0.09
COL6A3-206ENST00000409809 MINK1Q8N4C8 1332 aaPredicted RBP14.46□□□□□ -0.09
COL6A3-206ENST00000409809 U2AF2P26368 475 aaKnown RBP eCLIP14.46□□□□□ -0.09
COL6A3-206ENST00000409809 IARSP41252 1262 aaKnown RBP14.46□□□□□ -0.09
COL6A3-206ENST00000409809 DNA2P51530 1060 aa14.46□□□□□ -0.09
COL6A3-206ENST00000409809 ATP2A3Q93084 1043 aa14.46□□□□□ -0.09
COL6A3-206ENST00000409809 NRBF2Q96F24 287 aa14.46□□□□□ -0.09
COL6A3-206ENST00000409809 SCINQ9Y6U3 715 aa14.46□□□□□ -0.09
COL6A3-206ENST00000409809 TROQ12816 1431 aaPredicted RBP14.46□□□□□ -0.09
COL6A3-206ENST00000409809 CCDC63Q8NA47 563 aa14.46□□□□□ -0.09
COL6A3-206ENST00000409809 NEK1Q96PY6 1258 aa14.46□□□□□ -0.09
COL6A3-206ENST00000409809 ELF2Q15723 593 aa14.46□□□□□ -0.09
COL6A3-206ENST00000409809 CUL5Q93034 780 aa14.46□□□□□ -0.09
COL6A3-206ENST00000409809 RRP36Q96EU6 259 aaKnown RBP14.46□□□□□ -0.09
COL6A3-206ENST00000409809 VGLL3A8MV65 326 aa14.46□□□□□ -0.1
COL6A3-206ENST00000409809 SNX16P57768 344 aa14.46□□□□□ -0.1
COL6A3-206ENST00000409809 MMS22LQ6ZRQ5 1243 aa14.46□□□□□ -0.1
COL6A3-206ENST00000409809 KCNK9Q9NPC2 374 aa14.46□□□□□ -0.1
COL6A3-206ENST00000409809 IRX1P78414 480 aaPredicted RBP14.46□□□□□ -0.1
COL6A3-206ENST00000409809 NFE2L2Q16236 605 aa14.46□□□□□ -0.1
COL6A3-206ENST00000409809 PPP1R9BQ96SB3 815 aa14.46□□□□□ -0.1
COL6A3-206ENST00000409809 TUBB6Q9BUF5 446 aa14.46□□□□□ -0.1
COL6A3-206ENST00000409809 CNNM2Q9H8M5 875 aa14.46□□□□□ -0.1
COL6A3-206ENST00000409809 RIPOR2Q9Y4F9 1068 aa14.46□□□□□ -0.1
COL6A3-206ENST00000409809 SYNJ1O43426 1573 aa14.45□□□□□ -0.1
COL6A3-206ENST00000409809 APBB1IPQ7Z5R6 666 aaPredicted RBP14.45□□□□□ -0.1
COL6A3-206ENST00000409809 GUCA1BQ9UMX6 200 aa14.45□□□□□ -0.1
COL6A3-206ENST00000409809 GAS8O95995 478 aa14.45□□□□□ -0.1
COL6A3-206ENST00000409809 EVA1CP58658 441 aa14.45□□□□□ -0.1
COL6A3-206ENST00000409809 FBXO41Q8TF61 875 aa14.45□□□□□ -0.1
COL6A3-206ENST00000409809 IFT81Q8WYA0 676 aa14.45□□□□□ -0.1
COL6A3-206ENST00000409809 CAPS2Q9BXY5 557 aa14.45□□□□□ -0.1
COL6A3-206ENST00000409809 SIL1Q9H173 461 aa14.45□□□□□ -0.1
COL6A3-206ENST00000409809 SKIP12755 728 aa14.45□□□□□ -0.1
COL6A3-206ENST00000409809 HPDP32754 393 aaPredicted RBP14.45□□□□□ -0.1
COL6A3-206ENST00000409809 RRP15Q9Y3B9 282 aaKnown RBP14.45□□□□□ -0.1
COL6A3-206ENST00000409809 KIF21AQ7Z4S6 1674 aa14.45□□□□□ -0.1
COL6A3-206ENST00000409809 PDE1CQ14123 709 aaPredicted RBP14.45□□□□□ -0.1
COL6A3-206ENST00000409809 USP6NLQ92738 828 aa14.45□□□□□ -0.1
COL6A3-206ENST00000409809 ATP6V0A2Q9Y487 856 aa14.45□□□□□ -0.1
COL6A3-206ENST00000409809 TBCAO75347 108 aaKnown RBP14.45□□□□□ -0.1
COL6A3-206ENST00000409809 FAM160A1Q05DH4 1040 aa14.45□□□□□ -0.1
COL6A3-206ENST00000409809 LMNB2Q03252 620 aa14.45□□□□□ -0.1
COL6A3-206ENST00000409809 NBPF10Q6P3W6 841 aaKnown RBP14.45□□□□□ -0.1
COL6A3-206ENST00000409809 RABGGTAQ92696 567 aa14.45□□□□□ -0.1
COL6A3-206ENST00000409809 TROVE2P10155 538 aaKnown RBP eCLIP14.44□□□□□ -0.1
COL6A3-206ENST00000409809 ANKRD20A3Q5VUR7 823 aa14.44□□□□□ -0.1
COL6A3-206ENST00000409809 ZNF213O14771 459 aa14.44□□□□□ -0.1
COL6A3-206ENST00000409809 FKBP4Q02790 459 aaKnown RBP eCLIP14.44□□□□□ -0.1
COL6A3-206ENST00000409809 SLF2Q8IX21 1173 aa14.44□□□□□ -0.1
COL6A3-206ENST00000409809 RASIP1Q5U651 963 aa14.44□□□□□ -0.1
COL6A3-206ENST00000409809 MCTP2Q6DN12 878 aa14.44□□□□□ -0.1
COL6A3-206ENST00000409809 APLFQ8IW19 511 aaPredicted RBP14.44□□□□□ -0.1
COL6A3-206ENST00000409809 LMNAP02545 664 aaKnown RBP14.44□□□□□ -0.1
COL6A3-206ENST00000409809 USP5P45974 858 aa14.44□□□□□ -0.1
COL6A3-206ENST00000409809 PPP1R21Q6ZMI0 780 aa14.44□□□□□ -0.1
COL6A3-206ENST00000409809 RMDN2Q96LZ7 410 aa14.44□□□□□ -0.1
COL6A3-206ENST00000409809 CTTNBP2NLQ9P2B4 639 aa14.44□□□□□ -0.1
COL6A3-206ENST00000409809 TACC3Q9Y6A5 838 aa14.44□□□□□ -0.1
COL6A3-206ENST00000409809 E7EVH7 732 aa14.44□□□□□ -0.1
COL6A3-206ENST00000409809 PSME1Q06323 249 aa14.44□□□□□ -0.1
COL6A3-206ENST00000409809 MAP3K12Q12852 859 aa14.44□□□□□ -0.1
COL6A3-206ENST00000409809 DACT1Q9NYF0 836 aa14.44□□□□□ -0.1
COL6A3-206ENST00000409809 MYO1AQ9UBC5 1043 aa14.44□□□□□ -0.1
COL6A3-206ENST00000409809 BAIAP2L1Q9UHR4 511 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms