RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 PHF14O94880 888 aa24.54■■□□□ 1.52
USP39-203ENST00000409470 AMIGO3Q86WK7 504 aa24.54■■□□□ 1.52
USP39-203ENST00000409470 QTRT2Q9H974 415 aaKnown RBP24.54■■□□□ 1.52
USP39-203ENST00000409470 BSDC1Q9NW68 430 aaPredicted RBP24.54■■□□□ 1.52
USP39-203ENST00000409470 TAF1LQ8IZX4 1826 aa24.53■■□□□ 1.52
USP39-203ENST00000409470 F13A1P00488 732 aa24.53■■□□□ 1.52
USP39-203ENST00000409470 RFC4P35249 363 aa24.53■■□□□ 1.52
USP39-203ENST00000409470 HAND2P61296 217 aa24.53■■□□□ 1.52
USP39-203ENST00000409470 MAP3K12Q12852 859 aa24.53■■□□□ 1.52
USP39-203ENST00000409470 TPTE2Q6XPS3 522 aa24.53■■□□□ 1.52
USP39-203ENST00000409470 NLRP3Q96P20 1036 aa24.53■■□□□ 1.52
USP39-203ENST00000409470 BCL11BQ9C0K0 894 aaPredicted RBP24.53■■□□□ 1.52
USP39-203ENST00000409470 COL4A1P02462 1669 aa24.53■■□□□ 1.52
USP39-203ENST00000409470 MYO5AQ9Y4I1 1855 aaKnown RBP24.53■■□□□ 1.52
USP39-203ENST00000409470 TRAPPC3LQ5T215 181 aa24.52■■□□□ 1.52
USP39-203ENST00000409470 GTF3C6Q969F1 213 aa24.52■■□□□ 1.52
USP39-203ENST00000409470 ATP6V1DQ9Y5K8 247 aa24.52■■□□□ 1.52
USP39-203ENST00000409470 VPS37CA5D8V6 355 aaPredicted RBP24.52■■□□□ 1.52
USP39-203ENST00000409470 EXOSC10Q01780 885 aaKnown RBP24.52■■□□□ 1.52
USP39-203ENST00000409470 LARP1BQ659C4 914 aaKnown RBP24.52■■□□□ 1.52
USP39-203ENST00000409470 MTMR6Q9Y217 621 aa24.52■■□□□ 1.52
USP39-203ENST00000409470 PDCP20941 246 aa24.51■■□□□ 1.51
USP39-203ENST00000409470 CAVIN1Q6NZI2 390 aaKnown RBP24.51■■□□□ 1.51
USP39-203ENST00000409470 GPT2Q8TD30 523 aa24.51■■□□□ 1.51
USP39-203ENST00000409470 C4BP0C0L5 1744 aa24.51■■□□□ 1.51
USP39-203ENST00000409470 NPHP1O15259 732 aa24.51■■□□□ 1.51
USP39-203ENST00000409470 PDIA4P13667 645 aaKnown RBP24.51■■□□□ 1.51
USP39-203ENST00000409470 FAM196AQ6ZSG2 479 aa24.51■■□□□ 1.51
USP39-203ENST00000409470 CELF1Q92879 486 aaKnown RBP24.51■■□□□ 1.51
USP39-203ENST00000409470 CASZ1Q86V15 1759 aa24.5■■□□□ 1.51
USP39-203ENST00000409470 TCRBV5S4A2TA0A5A2 114 aa24.5■■□□□ 1.51
USP39-203ENST00000409470 ZNF213O14771 459 aa24.5■■□□□ 1.51
USP39-203ENST00000409470 APPP05067 770 aa24.5■■□□□ 1.51
USP39-203ENST00000409470 MAGEB6Q8N7X4 407 aa24.5■■□□□ 1.51
USP39-203ENST00000409470 AIDAQ96BJ3 306 aa24.5■■□□□ 1.51
USP39-203ENST00000409470 ISY1Q9ULR0 285 aaKnown RBP24.5■■□□□ 1.51
USP39-203ENST00000409470 COL24A1Q17RW2 1714 aa24.5■■□□□ 1.51
USP39-203ENST00000409470 TAF1P21675 1872 aa24.49■■□□□ 1.51
USP39-203ENST00000409470 CCDC24Q8N4L8 307 aa24.49■■□□□ 1.51
USP39-203ENST00000409470 MINPP1Q9UNW1 487 aa24.49■■□□□ 1.51
USP39-203ENST00000409470 MBD3O95983 291 aa24.49■■□□□ 1.51
USP39-203ENST00000409470 UBE4AQ14139 1066 aa24.49■■□□□ 1.51
USP39-203ENST00000409470 CHST3Q7LGC8 479 aa24.49■■□□□ 1.51
USP39-203ENST00000409470 GDPD2Q9HCC8 539 aa24.49■■□□□ 1.51
USP39-203ENST00000409470 APOBRQ0VD83 1088 aa24.48■■□□□ 1.51
USP39-203ENST00000409470 AGXT2Q9BYV1 514 aa24.48■■□□□ 1.51
USP39-203ENST00000409470 GNL3LQ9NVN8 582 aaKnown RBP24.48■■□□□ 1.51
USP39-203ENST00000409470 PFKFB2O60825 505 aa24.47■■□□□ 1.51
USP39-203ENST00000409470 RPS8P62241 208 aaKnown RBP24.47■■□□□ 1.51
USP39-203ENST00000409470 LRRC4BQ9NT99 713 aa24.47■■□□□ 1.51
USP39-203ENST00000409470 NAP1L2Q9ULW6 460 aaPredicted RBP24.47■■□□□ 1.51
USP39-203ENST00000409470 GYG1P46976 350 aa24.46■■□□□ 1.51
USP39-203ENST00000409470 MRE11P49959 708 aa24.46■■□□□ 1.51
USP39-203ENST00000409470 SCRN1Q12765 414 aa24.46■■□□□ 1.51
USP39-203ENST00000409470 RALYLQ86SE5 291 aaKnown RBP24.46■■□□□ 1.51
USP39-203ENST00000409470 USP48Q86UV5 1035 aa24.46■■□□□ 1.51
USP39-203ENST00000409470 STRBPQ96SI9 672 aaKnown RBP24.46■■□□□ 1.51
USP39-203ENST00000409470 IQSEC3Q9UPP2 1182 aaPredicted RBP24.46■■□□□ 1.51
USP39-203ENST00000409470 CNPY2Q9Y2B0 182 aa24.46■■□□□ 1.51
USP39-203ENST00000409470 DOCK2Q92608 1830 aa24.46■■□□□ 1.51
USP39-203ENST00000409470 CAVIN4Q5BKX8 364 aa24.45■■□□□ 1.51
USP39-203ENST00000409470 NCOA7Q8NI08 942 aa24.45■■□□□ 1.51
USP39-203ENST00000409470 LRP2BPQ9P2M1 347 aa24.45■■□□□ 1.51
USP39-203ENST00000409470 C4AP0C0L4 1744 aa24.45■■□□□ 1.5
USP39-203ENST00000409470 JAK2O60674 1132 aa24.45■■□□□ 1.5
USP39-203ENST00000409470 VPS37DQ86XT2 251 aa24.45■■□□□ 1.5
USP39-203ENST00000409470 MBD4O95243 580 aa24.44■■□□□ 1.5
USP39-203ENST00000409470 XRCC6P12956 609 aaKnown RBP eCLIP24.44■■□□□ 1.5
USP39-203ENST00000409470 MCM5P33992 734 aa24.44■■□□□ 1.5
USP39-203ENST00000409470 ZSCAN23Q3MJ62 389 aa24.44■■□□□ 1.5
USP39-203ENST00000409470 GAS2L3Q86XJ1 694 aa24.44■■□□□ 1.5
USP39-203ENST00000409470 GRPEL1Q9HAV7 217 aa24.44■■□□□ 1.5
USP39-203ENST00000409470 RBM27Q9P2N5 1060 aaKnown RBP24.44■■□□□ 1.5
USP39-203ENST00000409470 ZNF804BA4D1E1 1349 aa24.44■■□□□ 1.5
USP39-203ENST00000409470 A0A1B0GUL6 1792 aa24.44■■□□□ 1.5
USP39-203ENST00000409470 TCHHQ07283 1943 aa24.44■■□□□ 1.5
USP39-203ENST00000409470 WTIPA6NIX2 430 aaPredicted RBP24.44■■□□□ 1.5
USP39-203ENST00000409470 LLPHQ9BRT6 129 aaKnown RBP24.44■■□□□ 1.5
USP39-203ENST00000409470 BRPF3Q9ULD4 1205 aa24.44■■□□□ 1.5
USP39-203ENST00000409470 NSFL1CQ9UNZ2 370 aaKnown RBP24.44■■□□□ 1.5
USP39-203ENST00000409470 PRC1O43663 620 aa24.43■■□□□ 1.5
USP39-203ENST00000409470 ADRA2BP18089 450 aa24.43■■□□□ 1.5
USP39-203ENST00000409470 TRDNQ13061 729 aa24.43■■□□□ 1.5
USP39-203ENST00000409470 CDC37L1Q7L3B6 337 aa24.43■■□□□ 1.5
USP39-203ENST00000409470 MB21D2Q8IYB1 491 aaPredicted RBP24.43■■□□□ 1.5
USP39-203ENST00000409470 TMEM87AQ8NBN3 555 aa24.43■■□□□ 1.5
USP39-203ENST00000409470 CARMIL3Q8ND23 1372 aa24.43■■□□□ 1.5
USP39-203ENST00000409470 KRT27Q7Z3Y8 459 aa24.42■■□□□ 1.5
USP39-203ENST00000409470 FBXL16Q8N461 479 aa24.42■■□□□ 1.5
USP39-203ENST00000409470 ZNF274Q96GC6 653 aaPredicted RBP24.42■■□□□ 1.5
USP39-203ENST00000409470 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.42■■□□□ 1.5
USP39-203ENST00000409470 PATL2C9JE40 543 aaKnown RBP24.42■■□□□ 1.5
USP39-203ENST00000409470 CCT2P78371 535 aaKnown RBP24.42■■□□□ 1.5
USP39-203ENST00000409470 NFIXQ14938 502 aa24.42■■□□□ 1.5
USP39-203ENST00000409470 FAM184AQ8NB25 1140 aa24.42■■□□□ 1.5
USP39-203ENST00000409470 DDX11Q96FC9 970 aa24.42■■□□□ 1.5
USP39-203ENST00000409470 ARMT1Q9H993 441 aa24.42■■□□□ 1.5
USP39-203ENST00000409470 GADD45BO75293 160 aaPredicted RBP24.41■■□□□ 1.5
USP39-203ENST00000409470 DNM1Q05193 864 aaKnown RBP24.41■■□□□ 1.5
USP39-203ENST00000409470 ANKRD2Q9GZV1 360 aa24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms