RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 IARSP41252 1262 aaKnown RBP21.95■■□□□ 1.1
SDC1-203ENST00000403076 EVI5LQ96CN4 794 aa21.95■■□□□ 1.1
SDC1-203ENST00000403076 EDC3Q96F86 508 aaKnown RBP21.95■■□□□ 1.1
SDC1-203ENST00000403076 RASSF7Q02833 373 aa21.94■■□□□ 1.1
SDC1-203ENST00000403076 FBXW7Q969H0 707 aa21.94■■□□□ 1.1
SDC1-203ENST00000403076 LTBP3Q9NS15 1303 aa21.93■■□□□ 1.1
SDC1-203ENST00000403076 ECE2O60344 883 aa21.93■■□□□ 1.1
SDC1-203ENST00000403076 YBX3P16989 372 aaKnown RBP eCLIP21.93■■□□□ 1.1
SDC1-203ENST00000403076 TTF1Q15361 905 aaPredicted RBP21.93■■□□□ 1.1
SDC1-203ENST00000403076 PODNQ7Z5L7 613 aa21.93■■□□□ 1.1
SDC1-203ENST00000403076 JAG2Q9Y219 1238 aa21.93■■□□□ 1.1
SDC1-203ENST00000403076 FER1L6Q2WGJ9 1857 aa21.92■■□□□ 1.1
SDC1-203ENST00000403076 NIM1KQ8IY84 436 aa21.92■■□□□ 1.1
SDC1-203ENST00000403076 JDP2Q8WYK2 163 aa21.92■■□□□ 1.1
SDC1-203ENST00000403076 FSD1Q9BTV5 496 aa21.92■■□□□ 1.1
SDC1-203ENST00000403076 ANTXR1Q9H6X2 564 aa21.92■■□□□ 1.1
SDC1-203ENST00000403076 CYP2E1P05181 493 aaPredicted RBP21.91■■□□□ 1.1
SDC1-203ENST00000403076 GTF2IP78347 998 aa21.9■■□□□ 1.1
SDC1-203ENST00000403076 TBC1D9Q6ZT07 1266 aa21.9■■□□□ 1.1
SDC1-203ENST00000403076 WDR66Q8TBY9 1149 aa21.9■■□□□ 1.1
SDC1-203ENST00000403076 ABCF2Q9UG63 623 aa21.9■■□□□ 1.1
SDC1-203ENST00000403076 PDS5AQ29RF7 1337 aaKnown RBP21.9■■□□□ 1.1
SDC1-203ENST00000403076 ZBTB22O15209 634 aa21.9■■□□□ 1.1
SDC1-203ENST00000403076 KBTBD3Q8NAB2 608 aa21.9■■□□□ 1.1
SDC1-203ENST00000403076 LRP2BPQ9P2M1 347 aa21.9■■□□□ 1.1
SDC1-203ENST00000403076 AKAP11Q9UKA4 1901 aa21.89■■□□□ 1.09
SDC1-203ENST00000403076 IDH1O75874 414 aaKnown RBP21.89■■□□□ 1.09
SDC1-203ENST00000403076 TTLL5Q6EMB2 1281 aa21.89■■□□□ 1.09
SDC1-203ENST00000403076 PIH1D3Q9NQM4 214 aaKnown RBP21.89■■□□□ 1.09
SDC1-203ENST00000403076 COL1A1P02452 1464 aaPredicted RBP21.88■■□□□ 1.09
SDC1-203ENST00000403076 LRRFIP1Q32MZ4 808 aaKnown RBP21.88■■□□□ 1.09
SDC1-203ENST00000403076 ZGPATQ8N5A5 531 aaKnown RBP21.88■■□□□ 1.09
SDC1-203ENST00000403076 FAM205AQ6ZU69 1335 aa21.87■■□□□ 1.09
SDC1-203ENST00000403076 GRIN3BO60391 1043 aa21.87■■□□□ 1.09
SDC1-203ENST00000403076 CDC45O75419 566 aa21.87■■□□□ 1.09
SDC1-203ENST00000403076 SPTY2D1Q68D10 685 aaPredicted RBP21.87■■□□□ 1.09
SDC1-203ENST00000403076 TBC1D22AQ8WUA7 517 aa21.87■■□□□ 1.09
SDC1-203ENST00000403076 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.87■■□□□ 1.09
SDC1-203ENST00000403076 KCNQ5Q9NR82 932 aa21.87■■□□□ 1.09
SDC1-203ENST00000403076 RAI14Q9P0K7 980 aa21.87■■□□□ 1.09
SDC1-203ENST00000403076 ZNRF3Q9ULT6 936 aa21.87■■□□□ 1.09
SDC1-203ENST00000403076 MYH13Q9UKX3 1938 aa21.87■■□□□ 1.09
SDC1-203ENST00000403076 USP17L3A6NCW0 530 aa21.86■■□□□ 1.09
SDC1-203ENST00000403076 USP17L4A6NCW7 530 aa21.86■■□□□ 1.09
SDC1-203ENST00000403076 LMNB1P20700 586 aa21.86■■□□□ 1.09
SDC1-203ENST00000403076 MAP3K12Q12852 859 aa21.86■■□□□ 1.09
SDC1-203ENST00000403076 CASC1Q6TDU7 716 aa21.86■■□□□ 1.09
SDC1-203ENST00000403076 ERICH6Q7L0X2 663 aa21.86■■□□□ 1.09
SDC1-203ENST00000403076 USP17L1Q7RTZ2 530 aa21.86■■□□□ 1.09
SDC1-203ENST00000403076 DIAPH3Q9NSV4 1193 aa21.86■■□□□ 1.09
SDC1-203ENST00000403076 MFSD14BQ5SR56 506 aa21.85■■□□□ 1.09
SDC1-203ENST00000403076 YDJCA8MPS7 323 aa21.85■■□□□ 1.09
SDC1-203ENST00000403076 HIP1O00291 1037 aa21.85■■□□□ 1.09
SDC1-203ENST00000403076 RAD17O75943 681 aa21.85■■□□□ 1.09
SDC1-203ENST00000403076 ZSCAN25Q6NSZ9 544 aa21.85■■□□□ 1.09
SDC1-203ENST00000403076 SALL1Q9NSC2 1324 aa21.84■■□□□ 1.09
SDC1-203ENST00000403076 LDHBP07195 334 aaKnown RBP21.84■■□□□ 1.09
SDC1-203ENST00000403076 PRELPP51888 382 aa21.84■■□□□ 1.09
SDC1-203ENST00000403076 STRIP1Q5VSL9 837 aa21.84■■□□□ 1.09
SDC1-203ENST00000403076 AK9Q5TCS8 1911 aa21.83■■□□□ 1.09
SDC1-203ENST00000403076 RNF113AO15541 343 aaKnown RBP21.83■■□□□ 1.09
SDC1-203ENST00000403076 CHMLP26374 656 aa21.83■■□□□ 1.09
SDC1-203ENST00000403076 SLC9C2Q5TAH2 1124 aa21.83■■□□□ 1.09
SDC1-203ENST00000403076 CHD4Q14839 1912 aa21.83■■□□□ 1.09
SDC1-203ENST00000403076 COL4A5P29400 1685 aa21.82■■□□□ 1.08
SDC1-203ENST00000403076 DCAF8L1A6NGE4 600 aa21.82■■□□□ 1.08
SDC1-203ENST00000403076 ZFYP08048 801 aaPredicted RBP21.82■■□□□ 1.08
SDC1-203ENST00000403076 PRDX5P30044 214 aa21.82■■□□□ 1.08
SDC1-203ENST00000403076 EIF6P56537 245 aaKnown RBP21.82■■□□□ 1.08
SDC1-203ENST00000403076 RNF181Q9P0P0 153 aa21.82■■□□□ 1.08
SDC1-203ENST00000403076 CIAPIN1Q6FI81 312 aa21.81■■□□□ 1.08
SDC1-203ENST00000403076 TICAM2Q86XR7 235 aa21.81■■□□□ 1.08
SDC1-203ENST00000403076 DZIP1Q86YF9 867 aaKnown RBP21.81■■□□□ 1.08
SDC1-203ENST00000403076 MAGEB6Q8N7X4 407 aa21.81■■□□□ 1.08
SDC1-203ENST00000403076 MXD3Q9BW11 206 aa21.81■■□□□ 1.08
SDC1-203ENST00000403076 RFX7Q2KHR2 1363 aa21.81■■□□□ 1.08
SDC1-203ENST00000403076 PSMD14O00487 310 aa21.8■■□□□ 1.08
SDC1-203ENST00000403076 PDE6AP16499 860 aa21.8■■□□□ 1.08
SDC1-203ENST00000403076 TNIP1Q15025 636 aa21.8■■□□□ 1.08
SDC1-203ENST00000403076 DACT2Q5SW24 774 aa21.8■■□□□ 1.08
SDC1-203ENST00000403076 CWC27Q6UX04 472 aaKnown RBP21.8■■□□□ 1.08
SDC1-203ENST00000403076 RUFY2Q8WXA3 655 aa21.8■■□□□ 1.08
SDC1-203ENST00000403076 CXCL9Q07325 125 aa21.8■■□□□ 1.08
SDC1-203ENST00000403076 NMIQ13287 307 aaPredicted RBP21.8■■□□□ 1.08
SDC1-203ENST00000403076 NAA16Q6N069 864 aaPredicted RBP21.8■■□□□ 1.08
SDC1-203ENST00000403076 SRCAPQ6ZRS2 3230 aa21.79■■□□□ 1.08
SDC1-203ENST00000403076 CCDC88AQ3V6T2 1871 aa21.79■■□□□ 1.08
SDC1-203ENST00000403076 F8W031 263 aaPredicted RBP21.79■■□□□ 1.08
SDC1-203ENST00000403076 CHGBP05060 677 aa21.79■■□□□ 1.08
SDC1-203ENST00000403076 CYP7A1P22680 504 aa21.79■■□□□ 1.08
SDC1-203ENST00000403076 ADD2P35612 726 aa21.79■■□□□ 1.08
SDC1-203ENST00000403076 FKBP1AP62942 108 aaKnown RBP21.79■■□□□ 1.08
SDC1-203ENST00000403076 MECOMQ03112 1051 aa21.79■■□□□ 1.08
SDC1-203ENST00000403076 GRIK5Q16478 980 aa21.79■■□□□ 1.08
SDC1-203ENST00000403076 C9orf131Q5VYM1 1079 aa21.79■■□□□ 1.08
SDC1-203ENST00000403076 CERS5Q8N5B7 392 aa21.79■■□□□ 1.08
SDC1-203ENST00000403076 SUGT1Q9Y2Z0 365 aa21.79■■□□□ 1.08
SDC1-203ENST00000403076 ZNF532Q9HCE3 1301 aa21.79■■□□□ 1.08
SDC1-203ENST00000403076 SCN9AQ15858 1988 aa21.78■■□□□ 1.08
SDC1-203ENST00000403076 FZD9O00144 591 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms