RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 MAP4K1Q92918 833 aa16.97■□□□□ 0.31
VPS9D1-201ENST00000389386 FBXW7Q969H0 707 aa16.97■□□□□ 0.31
VPS9D1-201ENST00000389386 CHPF2Q9P2E5 772 aa16.97■□□□□ 0.31
VPS9D1-201ENST00000389386 PRAMEF22A3QJZ6 481 aa16.97■□□□□ 0.31
VPS9D1-201ENST00000389386 SLC27A2O14975 620 aa16.97■□□□□ 0.31
VPS9D1-201ENST00000389386 FAM160A1Q05DH4 1040 aa16.97■□□□□ 0.31
VPS9D1-201ENST00000389386 STK3Q13188 491 aa16.97■□□□□ 0.31
VPS9D1-201ENST00000389386 BLOC1S2Q6QNY1 142 aa16.97■□□□□ 0.31
VPS9D1-201ENST00000389386 RPS6KB1P23443 525 aa16.96■□□□□ 0.31
VPS9D1-201ENST00000389386 PPM1EQ8WY54 764 aa16.96■□□□□ 0.31
VPS9D1-201ENST00000389386 MPHOSPH8Q99549 860 aa16.96■□□□□ 0.31
VPS9D1-201ENST00000389386 ALS2Q96Q42 1657 aa16.96■□□□□ 0.31
VPS9D1-201ENST00000389386 BTBD11A6QL63 1104 aa16.96■□□□□ 0.3
VPS9D1-201ENST00000389386 CORO7P57737 925 aa16.96■□□□□ 0.3
VPS9D1-201ENST00000389386 GNL2Q13823 731 aaKnown RBP16.96■□□□□ 0.3
VPS9D1-201ENST00000389386 USP54Q70EL1 1684 aa16.95■□□□□ 0.3
VPS9D1-201ENST00000389386 PRR29P0C7W0 189 aa16.95■□□□□ 0.3
VPS9D1-201ENST00000389386 EIF4A1P60842 406 aaKnown RBP16.95■□□□□ 0.3
VPS9D1-201ENST00000389386 BPIFA3Q9BQP9 254 aa16.95■□□□□ 0.3
VPS9D1-201ENST00000389386 DEF6Q9H4E7 631 aa16.95■□□□□ 0.3
VPS9D1-201ENST00000389386 VPS18Q9P253 973 aa16.95■□□□□ 0.3
VPS9D1-201ENST00000389386 PIP4K2BP78356 416 aa16.95■□□□□ 0.3
VPS9D1-201ENST00000389386 PPP2R3AQ06190 1150 aa16.95■□□□□ 0.3
VPS9D1-201ENST00000389386 APOBRQ0VD83 1088 aa16.95■□□□□ 0.3
VPS9D1-201ENST00000389386 JAKMIP3Q5VZ66 844 aa16.95■□□□□ 0.3
VPS9D1-201ENST00000389386 CCDC151A5D8V7 595 aa16.94■□□□□ 0.3
VPS9D1-201ENST00000389386 H3BQV1 296 aa16.94■□□□□ 0.3
VPS9D1-201ENST00000389386 SART3Q15020 963 aaKnown RBP16.94■□□□□ 0.3
VPS9D1-201ENST00000389386 IFFO2Q5TF58 517 aa16.94■□□□□ 0.3
VPS9D1-201ENST00000389386 FTOQ9C0B1 505 aaKnown RBP eCLIP16.94■□□□□ 0.3
VPS9D1-201ENST00000389386 RGPD5Q99666 1765 aa16.94■□□□□ 0.3
VPS9D1-201ENST00000389386 LRRC37A3O60309 1634 aa16.94■□□□□ 0.3
VPS9D1-201ENST00000389386 SOS2Q07890 1332 aaPredicted RBP16.94■□□□□ 0.3
VPS9D1-201ENST00000389386 PLEKHO1Q53GL0 409 aaPredicted RBP16.94■□□□□ 0.3
VPS9D1-201ENST00000389386 AXDND1Q5T1B0 1012 aaPredicted RBP16.94■□□□□ 0.3
VPS9D1-201ENST00000389386 SUGP1Q8IWZ8 645 aaKnown RBP16.94■□□□□ 0.3
VPS9D1-201ENST00000389386 MRFAP1Q9Y605 127 aa16.94■□□□□ 0.3
VPS9D1-201ENST00000389386 VWA3AA6NCI4 1184 aa16.93■□□□□ 0.3
VPS9D1-201ENST00000389386 BRD3Q15059 726 aa16.93■□□□□ 0.3
VPS9D1-201ENST00000389386 DPCR1Q3MIW9 517 aa16.93■□□□□ 0.3
VPS9D1-201ENST00000389386 C1orf141Q5JVX7 400 aa16.93■□□□□ 0.3
VPS9D1-201ENST00000389386 GPATCH11Q8N954 259 aa16.93■□□□□ 0.3
VPS9D1-201ENST00000389386 PDE11AQ9HCR9 933 aa16.93■□□□□ 0.3
VPS9D1-201ENST00000389386 MKRN1Q9UHC7 482 aaKnown RBP16.93■□□□□ 0.3
VPS9D1-201ENST00000389386 TAF6LQ9Y6J9 622 aa16.93■□□□□ 0.3
VPS9D1-201ENST00000389386 SLIT3O75094 1523 aa16.93■□□□□ 0.3
VPS9D1-201ENST00000389386 CEMIPQ8WUJ3 1361 aa16.93■□□□□ 0.3
VPS9D1-201ENST00000389386 FSIP1Q8NA03 581 aa16.93■□□□□ 0.3
VPS9D1-201ENST00000389386 SRGAP3O43295 1099 aa16.92■□□□□ 0.3
VPS9D1-201ENST00000389386 TXLNAP40222 546 aa16.92■□□□□ 0.3
VPS9D1-201ENST00000389386 SWT1Q5T5J6 900 aaKnown RBP16.92■□□□□ 0.3
VPS9D1-201ENST00000389386 WDR24Q96S15 920 aa16.92■□□□□ 0.3
VPS9D1-201ENST00000389386 UTP14AQ9BVJ6 771 aaKnown RBP16.92■□□□□ 0.3
VPS9D1-201ENST00000389386 PI4KAP2A4QPH2 592 aa16.92■□□□□ 0.3
VPS9D1-201ENST00000389386 CSB-PGBD3P0DP91 1061 aa16.92■□□□□ 0.3
VPS9D1-201ENST00000389386 AKAP4Q5JQC9 854 aa16.92■□□□□ 0.3
VPS9D1-201ENST00000389386 FCHSD1Q86WN1 690 aa16.92■□□□□ 0.3
VPS9D1-201ENST00000389386 PI4KAP1Q8N8J0 262 aa16.92■□□□□ 0.3
VPS9D1-201ENST00000389386 ZNF622Q969S3 477 aaKnown RBP eCLIP16.92■□□□□ 0.3
VPS9D1-201ENST00000389386 NLRP2Q9NX02 1062 aa16.92■□□□□ 0.3
VPS9D1-201ENST00000389386 FAM208AQ9UK61 1670 aaKnown RBP16.92■□□□□ 0.3
VPS9D1-201ENST00000389386 ZSCAN12O43309 604 aa16.91■□□□□ 0.3
VPS9D1-201ENST00000389386 CPP00450 1065 aa16.91■□□□□ 0.3
VPS9D1-201ENST00000389386 NCAPHQ15003 741 aa16.91■□□□□ 0.3
VPS9D1-201ENST00000389386 PROSER3Q2NL68 480 aa16.91■□□□□ 0.3
VPS9D1-201ENST00000389386 FMR1NBQ8N0W7 255 aaPredicted RBP16.91■□□□□ 0.3
VPS9D1-201ENST00000389386 GOLGA1Q92805 767 aa16.91■□□□□ 0.3
VPS9D1-201ENST00000389386 RNMTO43148 476 aaKnown RBP16.91■□□□□ 0.3
VPS9D1-201ENST00000389386 FAM177A1Q8N128 213 aaPredicted RBP16.91■□□□□ 0.3
VPS9D1-201ENST00000389386 HNRNPLLQ8WVV9 542 aaKnown RBP16.91■□□□□ 0.3
VPS9D1-201ENST00000389386 FAM227BQ96M60 508 aa16.91■□□□□ 0.3
VPS9D1-201ENST00000389386 USP28Q96RU2 1077 aa16.91■□□□□ 0.3
VPS9D1-201ENST00000389386 SDF4Q9BRK5 362 aa16.91■□□□□ 0.3
VPS9D1-201ENST00000389386 NBPF7P0C2Y1 421 aaPredicted RBP16.9■□□□□ 0.3
VPS9D1-201ENST00000389386 FANCCQ00597 558 aa16.9■□□□□ 0.3
VPS9D1-201ENST00000389386 E2F4Q16254 413 aa16.9■□□□□ 0.3
VPS9D1-201ENST00000389386 CT47A1Q5JQC4 288 aaPredicted RBP16.9■□□□□ 0.3
VPS9D1-201ENST00000389386 MSL3Q8N5Y2 521 aaKnown RBP16.9■□□□□ 0.3
VPS9D1-201ENST00000389386 KIAA1468Q9P260 1216 aa16.9■□□□□ 0.3
VPS9D1-201ENST00000389386 GSCP56915 257 aaPredicted RBP16.9■□□□□ 0.3
VPS9D1-201ENST00000389386 GNG11P61952 73 aa16.9■□□□□ 0.3
VPS9D1-201ENST00000389386 SLC39A6Q13433 755 aa16.9■□□□□ 0.3
VPS9D1-201ENST00000389386 BEND6Q5SZJ8 279 aaPredicted RBP16.9■□□□□ 0.3
VPS9D1-201ENST00000389386 LRRC31Q6UY01 552 aa16.9■□□□□ 0.3
VPS9D1-201ENST00000389386 EVI5LQ96CN4 794 aa16.9■□□□□ 0.3
VPS9D1-201ENST00000389386 PRDM11Q9NQV5 511 aa16.9■□□□□ 0.3
VPS9D1-201ENST00000389386 SNRKQ9NRH2 765 aa16.9■□□□□ 0.3
VPS9D1-201ENST00000389386 ECHDC1Q9NTX5 307 aa16.9■□□□□ 0.3
VPS9D1-201ENST00000389386 PPP2R2CQ9Y2T4 447 aa16.9■□□□□ 0.3
VPS9D1-201ENST00000389386 MCM6Q14566 821 aa16.9■□□□□ 0.3
VPS9D1-201ENST00000389386 FMNL2Q96PY5 1086 aa16.9■□□□□ 0.3
VPS9D1-201ENST00000389386 LTBP4Q8N2S1 1624 aa16.89■□□□□ 0.3
VPS9D1-201ENST00000389386 N4BP1O75113 896 aaKnown RBP16.89■□□□□ 0.29
VPS9D1-201ENST00000389386 NMIQ13287 307 aaPredicted RBP16.89■□□□□ 0.29
VPS9D1-201ENST00000389386 MCTP2Q6DN12 878 aa16.89■□□□□ 0.29
VPS9D1-201ENST00000389386 MMS22LQ6ZRQ5 1243 aa16.89■□□□□ 0.29
VPS9D1-201ENST00000389386 HDXQ7Z353 690 aa16.89■□□□□ 0.29
VPS9D1-201ENST00000389386 AKAP2Q9Y2D5 859 aa16.89■□□□□ 0.29
VPS9D1-201ENST00000389386 FAN1Q9Y2M0 1017 aa16.89■□□□□ 0.29
VPS9D1-201ENST00000389386 ANKRD65E5RJM6 399 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms