RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 TNS2Q63HR2 1409 aa12.75□□□□□ -0.37
NEDD9-201ENST00000379433 H3BQV1 296 aa12.74□□□□□ -0.37
NEDD9-201ENST00000379433 GPAA1O43292 621 aa12.74□□□□□ -0.37
NEDD9-201ENST00000379433 SKOR2Q2VWA4 1001 aaPredicted RBP12.74□□□□□ -0.37
NEDD9-201ENST00000379433 IFFO2Q5TF58 517 aa12.74□□□□□ -0.37
NEDD9-201ENST00000379433 MAGEB6Q8N7X4 407 aa12.74□□□□□ -0.37
NEDD9-201ENST00000379433 TMEM63CQ9P1W3 806 aa12.74□□□□□ -0.37
NEDD9-201ENST00000379433 LRP2BPQ9P2M1 347 aa12.74□□□□□ -0.37
NEDD9-201ENST00000379433 U3KPZ7 1027 aaPredicted RBP12.74□□□□□ -0.37
NEDD9-201ENST00000379433 FGAP02671 866 aa12.74□□□□□ -0.37
NEDD9-201ENST00000379433 CHAF1AQ13111 956 aaPredicted RBP12.74□□□□□ -0.37
NEDD9-201ENST00000379433 TRIM28Q13263 835 aaKnown RBP12.74□□□□□ -0.37
NEDD9-201ENST00000379433 ZSCAN23Q3MJ62 389 aa12.74□□□□□ -0.37
NEDD9-201ENST00000379433 TBC1D9BQ66K14 1250 aa12.74□□□□□ -0.37
NEDD9-201ENST00000379433 NBPF5PQ86XG9 351 aaPredicted RBP12.74□□□□□ -0.37
NEDD9-201ENST00000379433 ZNF34Q8IZ26 560 aa12.74□□□□□ -0.37
NEDD9-201ENST00000379433 TOGARAM1Q9Y4F4 1720 aa12.74□□□□□ -0.37
NEDD9-201ENST00000379433 ZSCAN22P10073 491 aaPredicted RBP12.73□□□□□ -0.37
NEDD9-201ENST00000379433 HSPA1LP34931 641 aa12.73□□□□□ -0.37
NEDD9-201ENST00000379433 PSEN1P49768 467 aa12.73□□□□□ -0.37
NEDD9-201ENST00000379433 CDCA7Q9BWT1 371 aaPredicted RBP12.73□□□□□ -0.37
NEDD9-201ENST00000379433 TFCP2L1Q9NZI6 479 aa12.73□□□□□ -0.37
NEDD9-201ENST00000379433 MED23Q9ULK4 1368 aa12.73□□□□□ -0.37
NEDD9-201ENST00000379433 E7EWF7 191 aa12.73□□□□□ -0.37
NEDD9-201ENST00000379433 CIAO1O76071 339 aa12.73□□□□□ -0.37
NEDD9-201ENST00000379433 KLHL40Q2TBA0 621 aa12.73□□□□□ -0.37
NEDD9-201ENST00000379433 CCDC152Q4G0S7 254 aa12.73□□□□□ -0.37
NEDD9-201ENST00000379433 ZMYM1Q5SVZ6 1142 aa12.73□□□□□ -0.37
NEDD9-201ENST00000379433 OTUD7BQ6GQQ9 843 aa12.73□□□□□ -0.37
NEDD9-201ENST00000379433 AIDAQ96BJ3 306 aa12.73□□□□□ -0.37
NEDD9-201ENST00000379433 INTS4Q96HW7 963 aaKnown RBP12.73□□□□□ -0.37
NEDD9-201ENST00000379433 PDCL3Q9H2J4 239 aa12.73□□□□□ -0.37
NEDD9-201ENST00000379433 ZNF532Q9HCE3 1301 aa12.73□□□□□ -0.37
NEDD9-201ENST00000379433 ADAMTS7Q9UKP4 1686 aa12.73□□□□□ -0.37
NEDD9-201ENST00000379433 ARMT1Q9H993 441 aa12.72□□□□□ -0.37
NEDD9-201ENST00000379433 CHRNDQ07001 517 aa12.72□□□□□ -0.37
NEDD9-201ENST00000379433 RASGRF1Q13972 1273 aa12.72□□□□□ -0.37
NEDD9-201ENST00000379433 CAMK4Q16566 473 aa12.72□□□□□ -0.37
NEDD9-201ENST00000379433 ARMCX6Q7L4S7 300 aa12.72□□□□□ -0.37
NEDD9-201ENST00000379433 RALYLQ86SE5 291 aaKnown RBP12.72□□□□□ -0.37
NEDD9-201ENST00000379433 ZKSCAN3Q9BRR0 538 aa12.72□□□□□ -0.37
NEDD9-201ENST00000379433 GJB4Q9NTQ9 266 aa12.72□□□□□ -0.37
NEDD9-201ENST00000379433 RAI14Q9P0K7 980 aa12.72□□□□□ -0.37
NEDD9-201ENST00000379433 DISP2A7MBM2 1401 aa12.72□□□□□ -0.37
NEDD9-201ENST00000379433 PRKAB2O43741 272 aa12.72□□□□□ -0.37
NEDD9-201ENST00000379433 CELF1Q92879 486 aaKnown RBP12.72□□□□□ -0.37
NEDD9-201ENST00000379433 GPR101Q96P66 508 aaPredicted RBP12.72□□□□□ -0.37
NEDD9-201ENST00000379433 SETDB2Q96T68 719 aa12.72□□□□□ -0.37
NEDD9-201ENST00000379433 MYL10Q9BUA6 226 aa12.72□□□□□ -0.37
NEDD9-201ENST00000379433 ZNF652Q9Y2D9 606 aa12.72□□□□□ -0.37
NEDD9-201ENST00000379433 THRAP3Q9Y2W1 955 aaKnown RBP12.72□□□□□ -0.37
NEDD9-201ENST00000379433 F13A1P00488 732 aa12.71□□□□□ -0.37
NEDD9-201ENST00000379433 SLC5A1P13866 664 aa12.71□□□□□ -0.37
NEDD9-201ENST00000379433 PUM3Q15397 648 aaKnown RBP12.71□□□□□ -0.37
NEDD9-201ENST00000379433 ABCA3Q99758 1704 aa12.71□□□□□ -0.37
NEDD9-201ENST00000379433 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.71□□□□□ -0.37
NEDD9-201ENST00000379433 HMG20BQ9P0W2 317 aa12.71□□□□□ -0.37
NEDD9-201ENST00000379433 ZBTB12Q9Y330 459 aaPredicted RBP12.71□□□□□ -0.37
NEDD9-201ENST00000379433 ERVV-1B6SEH8 477 aa12.71□□□□□ -0.38
NEDD9-201ENST00000379433 ZNF213O14771 459 aa12.71□□□□□ -0.38
NEDD9-201ENST00000379433 FBXW7Q969H0 707 aa12.71□□□□□ -0.38
NEDD9-201ENST00000379433 NHSL1Q5SYE7 1610 aa12.71□□□□□ -0.38
NEDD9-201ENST00000379433 RPAP1Q9BWH6 1393 aaPredicted RBP12.7□□□□□ -0.38
NEDD9-201ENST00000379433 GOLGA6L4A6NEF3 574 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 MINDY4BA8MYZ0 360 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 NASPP49321 788 aaPredicted RBP12.7□□□□□ -0.38
NEDD9-201ENST00000379433 IMMTQ16891 758 aaKnown RBP12.7□□□□□ -0.38
NEDD9-201ENST00000379433 EGFL6Q8IUX8 553 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 SMARCC1Q92922 1105 aaPredicted RBP12.7□□□□□ -0.38
NEDD9-201ENST00000379433 MBD4O95243 580 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 KLRK1P26718 216 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 RFC4P35249 363 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 CTDSPL2Q05D32 466 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 SCRN1Q12765 414 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 SPATA5Q8NB90 893 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 ZSCAN31Q96LW9 406 aaPredicted RBP12.7□□□□□ -0.38
NEDD9-201ENST00000379433 FTOQ9C0B1 505 aaKnown RBP eCLIP12.7□□□□□ -0.38
NEDD9-201ENST00000379433 SH2B1Q9NRF2 756 aaPredicted RBP12.7□□□□□ -0.38
NEDD9-201ENST00000379433 HELLSQ9NRZ9 838 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 TCHHQ07283 1943 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 SMIM22K7EJ46 135 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 KRT32Q14532 448 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 PPP4R3BQ5MIZ7 849 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 FAM196AQ6ZSG2 479 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 ANKRD18AQ8IVF6 992 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 LPIN2Q92539 896 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 MTMR6Q9Y217 621 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 RTCBQ9Y3I0 505 aaKnown RBP12.7□□□□□ -0.38
NEDD9-201ENST00000379433 ITGB4P16144 1822 aa12.7□□□□□ -0.38
NEDD9-201ENST00000379433 PHLPP1O60346 1717 aa12.69□□□□□ -0.38
NEDD9-201ENST00000379433 GLI3P10071 1580 aa12.69□□□□□ -0.38
NEDD9-201ENST00000379433 MRE11P49959 708 aa12.69□□□□□ -0.38
NEDD9-201ENST00000379433 DHX32Q7L7V1 743 aaKnown RBP12.69□□□□□ -0.38
NEDD9-201ENST00000379433 NKX2-3Q8TAU0 364 aa12.69□□□□□ -0.38
NEDD9-201ENST00000379433 TRIM44Q96DX7 344 aaPredicted RBP12.69□□□□□ -0.38
NEDD9-201ENST00000379433 TM6SF1Q9BZW5 370 aa12.69□□□□□ -0.38
NEDD9-201ENST00000379433 AFF2P51816 1311 aa12.69□□□□□ -0.38
NEDD9-201ENST00000379433 B4E1Z4 1266 aa12.69□□□□□ -0.38
NEDD9-201ENST00000379433 IRF6O14896 467 aa12.69□□□□□ -0.38
NEDD9-201ENST00000379433 TRIM37O94972 964 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms