RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 PIP4K2AP48426 406 aaPredicted RBP10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 RCAN1P53805 252 aa10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 KRT85P78386 507 aa10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 FGD1P98174 961 aa10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 CCDC173Q0VFZ6 552 aa10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 MAP3K12Q12852 859 aa10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 TRDNQ13061 729 aa10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 PPP2R5BQ15173 497 aa10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 UVSSAQ2YD98 709 aa10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 LARP1BQ659C4 914 aaKnown RBP10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 NAA16Q6N069 864 aaPredicted RBP10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 MARCH10Q8NA82 808 aaPredicted RBP10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 GTF3C6Q969F1 213 aa10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 SLC4A9Q96Q91 983 aa10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 BCL11BQ9C0K0 894 aaPredicted RBP10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 CNNM2Q9H8M5 875 aa10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 NUP98P52948 1817 aa10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 DOT1LQ8TEK3 1739 aa10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 CYP21A2P08686 494 aa10.29□□□□□ -0.76
SNRNP40-202ENST00000373720 XRCC6P12956 609 aaKnown RBP eCLIP10.29□□□□□ -0.76
SNRNP40-202ENST00000373720 EXOSC10Q01780 885 aaKnown RBP10.29□□□□□ -0.76
SNRNP40-202ENST00000373720 UBE4AQ14139 1066 aa10.29□□□□□ -0.76
SNRNP40-202ENST00000373720 HLFQ16534 295 aa10.29□□□□□ -0.76
SNRNP40-202ENST00000373720 ME3Q16798 604 aa10.29□□□□□ -0.76
SNRNP40-202ENST00000373720 ADCK5Q3MIX3 580 aa10.29□□□□□ -0.76
SNRNP40-202ENST00000373720 CPLX2Q6PUV4 134 aaKnown RBP10.29□□□□□ -0.76
SNRNP40-202ENST00000373720 LRSAM1Q6UWE0 723 aa10.29□□□□□ -0.76
SNRNP40-202ENST00000373720 DDX46Q7L014 1031 aaKnown RBP10.29□□□□□ -0.76
SNRNP40-202ENST00000373720 ZNF589Q86UQ0 364 aaPredicted RBP10.29□□□□□ -0.76
SNRNP40-202ENST00000373720 CERS3Q8IU89 383 aa10.29□□□□□ -0.76
SNRNP40-202ENST00000373720 FAM43AQ8N2R8 423 aa10.29□□□□□ -0.76
SNRNP40-202ENST00000373720 TMTC2Q8N394 836 aa10.29□□□□□ -0.76
SNRNP40-202ENST00000373720 NCOA7Q8NI08 942 aa10.29□□□□□ -0.76
SNRNP40-202ENST00000373720 NACAP1Q9BZK3 213 aa10.29□□□□□ -0.76
SNRNP40-202ENST00000373720 PCDHB8Q9UN66 801 aa10.29□□□□□ -0.76
SNRNP40-202ENST00000373720 ZNF213O14771 459 aa10.28□□□□□ -0.76
SNRNP40-202ENST00000373720 ONECUT3O60422 494 aaPredicted RBP10.28□□□□□ -0.76
SNRNP40-202ENST00000373720 RPS6KA4O75676 772 aa10.28□□□□□ -0.76
SNRNP40-202ENST00000373720 CDKL5O76039 1030 aa10.28□□□□□ -0.76
SNRNP40-202ENST00000373720 ADD2P35612 726 aa10.28□□□□□ -0.76
SNRNP40-202ENST00000373720 FKBP4Q02790 459 aaKnown RBP eCLIP10.28□□□□□ -0.76
SNRNP40-202ENST00000373720 ZSCAN23Q3MJ62 389 aa10.28□□□□□ -0.76
SNRNP40-202ENST00000373720 SMARCC2Q8TAQ2 1214 aa10.28□□□□□ -0.76
SNRNP40-202ENST00000373720 TMEM87BQ96K49 555 aa10.28□□□□□ -0.76
SNRNP40-202ENST00000373720 ARXQ96QS3 562 aa10.28□□□□□ -0.76
SNRNP40-202ENST00000373720 ANKRD2Q9GZV1 360 aa10.28□□□□□ -0.76
SNRNP40-202ENST00000373720 GREM2Q9H772 168 aa10.28□□□□□ -0.76
SNRNP40-202ENST00000373720 ZNF330Q9Y3S2 320 aaPredicted RBP10.28□□□□□ -0.76
SNRNP40-202ENST00000373720 LAMB2P55268 1798 aa10.28□□□□□ -0.76
SNRNP40-202ENST00000373720 RIC1Q4ADV7 1423 aa10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 E7EWF7 191 aa10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 ADAMTS2O95450 1211 aa10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 TOB2Q14106 344 aaPredicted RBP10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 CCDC183Q5T5S1 534 aa10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 CCDC102BQ68D86 513 aa10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 GIMAP6Q6P9H5 292 aa10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 RALYLQ86SE5 291 aaKnown RBP10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 CCDC83Q8IWF9 413 aa10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 TRIM44Q96DX7 344 aaPredicted RBP10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 NGLY1Q96IV0 654 aa10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 PPP1R9BQ96SB3 815 aa10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 TMEM121BQ9BXQ6 578 aaPredicted RBP10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 RNF41Q9H4P4 317 aaPredicted RBP10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 BSDC1Q9NW68 430 aaPredicted RBP10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 NARFQ9UHQ1 456 aa10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 TPCN1Q9ULQ1 816 aa10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 MTMR6Q9Y217 621 aa10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 CCDC9Q9Y3X0 531 aaKnown RBP10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 KAT6BQ8WYB5 2073 aa10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 MAST3O60307 1309 aa10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 PNPLA7Q6ZV29 1317 aa10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 ARAP2Q8WZ64 1704 aa10.27□□□□□ -0.77
SNRNP40-202ENST00000373720 BCL9LQ86UU0 1499 aa10.26□□□□□ -0.77
SNRNP40-202ENST00000373720 NTSR2O95665 410 aa10.26□□□□□ -0.77
SNRNP40-202ENST00000373720 NASPP49321 788 aaPredicted RBP10.26□□□□□ -0.77
SNRNP40-202ENST00000373720 WASHC4Q2M389 1173 aa10.26□□□□□ -0.77
SNRNP40-202ENST00000373720 CAVIN4Q5BKX8 364 aa10.26□□□□□ -0.77
SNRNP40-202ENST00000373720 SUSD4Q5VX71 490 aa10.26□□□□□ -0.77
SNRNP40-202ENST00000373720 TPTE2Q6XPS3 522 aa10.26□□□□□ -0.77
SNRNP40-202ENST00000373720 Q6ZUG5 572 aa10.26□□□□□ -0.77
SNRNP40-202ENST00000373720 ZNF594Q96JF6 807 aaPredicted RBP10.26□□□□□ -0.77
SNRNP40-202ENST00000373720 ZNF396Q96N95 335 aaPredicted RBP10.26□□□□□ -0.77
SNRNP40-202ENST00000373720 PUS3Q9BZE2 481 aaKnown RBP10.26□□□□□ -0.77
SNRNP40-202ENST00000373720 KRT23Q9C075 422 aa10.26□□□□□ -0.77
SNRNP40-202ENST00000373720 NIP7Q9Y221 180 aaKnown RBP eCLIP10.26□□□□□ -0.77
SNRNP40-202ENST00000373720 UBN2Q6ZU65 1347 aa10.26□□□□□ -0.77
SNRNP40-202ENST00000373720 COL5A3P25940 1745 aaPredicted RBP10.25□□□□□ -0.77
SNRNP40-202ENST00000373720 GOLGA6L4A6NEF3 574 aa10.25□□□□□ -0.77
SNRNP40-202ENST00000373720 PATL2C9JE40 543 aaKnown RBP10.25□□□□□ -0.77
SNRNP40-202ENST00000373720 GPTP24298 496 aa10.25□□□□□ -0.77
SNRNP40-202ENST00000373720 LIFRP42702 1097 aa10.25□□□□□ -0.77
SNRNP40-202ENST00000373720 SLC9C2Q5TAH2 1124 aa10.25□□□□□ -0.77
SNRNP40-202ENST00000373720 CAVIN1Q6NZI2 390 aaKnown RBP10.25□□□□□ -0.77
SNRNP40-202ENST00000373720 USP48Q86UV5 1035 aa10.25□□□□□ -0.77
SNRNP40-202ENST00000373720 ANKRD18AQ8IVF6 992 aa10.25□□□□□ -0.77
SNRNP40-202ENST00000373720 SPATA5Q8NB90 893 aa10.25□□□□□ -0.77
SNRNP40-202ENST00000373720 JARID2Q92833 1246 aaPredicted RBP10.25□□□□□ -0.77
SNRNP40-202ENST00000373720 CCDC196A0A1B0GTZ2 297 aa10.24□□□□□ -0.77
SNRNP40-202ENST00000373720 UBAP1LF5GYI3 381 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms