RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ERMNQ8TAM6 284 aa13.01□□□□□ -0.33
PTPRF-203ENST00000372407 A2ML1A8K2U0 1454 aa13.01□□□□□ -0.33
PTPRF-203ENST00000372407 ZBTB7BO15156 539 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-203ENST00000372407 TUBB4BP68371 445 aa13.01□□□□□ -0.33
PTPRF-203ENST00000372407 ZCRB1Q8TBF4 217 aaKnown RBP13.01□□□□□ -0.33
PTPRF-203ENST00000372407 SCLT1Q96NL6 688 aa13.01□□□□□ -0.33
PTPRF-203ENST00000372407 TACC1O75410 805 aa13.01□□□□□ -0.33
PTPRF-203ENST00000372407 BRAPQ7Z569 592 aa13.01□□□□□ -0.33
PTPRF-203ENST00000372407 FEZ1Q99689 392 aa13.01□□□□□ -0.33
PTPRF-203ENST00000372407 HSF2BPO75031 334 aa13.01□□□□□ -0.33
PTPRF-203ENST00000372407 CALML3P27482 149 aa13.01□□□□□ -0.33
PTPRF-203ENST00000372407 TRAF1Q13077 416 aa13.01□□□□□ -0.33
PTPRF-203ENST00000372407 BBXQ8WY36 941 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-203ENST00000372407 PLXNC1O60486 1568 aa13□□□□□ -0.33
PTPRF-203ENST00000372407 METP08581 1390 aa13□□□□□ -0.33
PTPRF-203ENST00000372407 FLT4P35916 1363 aa13□□□□□ -0.33
PTPRF-203ENST00000372407 PTPDC1A2A3K4 754 aa13□□□□□ -0.33
PTPRF-203ENST00000372407 GSTO1P78417 241 aa13□□□□□ -0.33
PTPRF-203ENST00000372407 UBE4AQ14139 1066 aa13□□□□□ -0.33
PTPRF-203ENST00000372407 TIGD1Q96MW7 591 aa13□□□□□ -0.33
PTPRF-203ENST00000372407 ZRANB1Q9UGI0 708 aa13□□□□□ -0.33
PTPRF-203ENST00000372407 IBSPP21815 317 aaPredicted RBP13□□□□□ -0.33
PTPRF-203ENST00000372407 ATL3Q6DD88 541 aa13□□□□□ -0.33
PTPRF-203ENST00000372407 NAA16Q6N069 864 aaPredicted RBP13□□□□□ -0.33
PTPRF-203ENST00000372407 GCC2Q8IWJ2 1684 aa13□□□□□ -0.33
PTPRF-203ENST00000372407 PTGS1P23219 599 aa13□□□□□ -0.33
PTPRF-203ENST00000372407 DHX58Q96C10 678 aa13□□□□□ -0.33
PTPRF-203ENST00000372407 RNF113AO15541 343 aaKnown RBP13□□□□□ -0.33
PTPRF-203ENST00000372407 KRT86O43790 486 aa13□□□□□ -0.33
PTPRF-203ENST00000372407 ASIC1P78348 528 aa13□□□□□ -0.33
PTPRF-203ENST00000372407 KRT83P78385 493 aa13□□□□□ -0.33
PTPRF-203ENST00000372407 KIF5AQ12840 1032 aa13□□□□□ -0.33
PTPRF-203ENST00000372407 RUFY3Q7L099 469 aa13□□□□□ -0.33
PTPRF-203ENST00000372407 TRMT1LQ7Z2T5 733 aaKnown RBP13□□□□□ -0.33
PTPRF-203ENST00000372407 TSPY3P0CV98 308 aa12.99□□□□□ -0.33
PTPRF-203ENST00000372407 TSPY8P0CW00 308 aa12.99□□□□□ -0.33
PTPRF-203ENST00000372407 IL2RBP14784 551 aa12.99□□□□□ -0.33
PTPRF-203ENST00000372407 GIGYF2Q6Y7W6 1299 aaKnown RBP12.99□□□□□ -0.33
PTPRF-203ENST00000372407 IQSEC3Q9UPP2 1182 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-203ENST00000372407 CTAGE9A4FU28 777 aa12.99□□□□□ -0.33
PTPRF-203ENST00000372407 TUBBP07437 444 aa12.99□□□□□ -0.33
PTPRF-203ENST00000372407 APOBRQ0VD83 1088 aa12.99□□□□□ -0.33
PTPRF-203ENST00000372407 CWF19L2Q2TBE0 894 aaKnown RBP12.99□□□□□ -0.33
PTPRF-203ENST00000372407 CCDC174Q6PII3 467 aa12.99□□□□□ -0.33
PTPRF-203ENST00000372407 PRDM15P57071 1507 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-203ENST00000372407 CALM1P0DP23 149 aa12.99□□□□□ -0.33
PTPRF-203ENST00000372407 CALM2P0DP24 149 aa12.99□□□□□ -0.33
PTPRF-203ENST00000372407 CALM3P0DP25 149 aa12.99□□□□□ -0.33
PTPRF-203ENST00000372407 SAMM50Q9Y512 469 aa12.99□□□□□ -0.33
PTPRF-203ENST00000372407 CCDC42Q96M95 316 aa12.98□□□□□ -0.33
PTPRF-203ENST00000372407 IFNKQ9P0W0 207 aa12.98□□□□□ -0.33
PTPRF-203ENST00000372407 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.98□□□□□ -0.333e-7■□□□□ 9.1
PTPRF-203ENST00000372407 V9GYY5 206 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-203ENST00000372407 NBPF6Q5VWK0 638 aa12.98□□□□□ -0.33
PTPRF-203ENST00000372407 NBPF5PQ86XG9 351 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-203ENST00000372407 GOLGA1Q92805 767 aa12.98□□□□□ -0.33
PTPRF-203ENST00000372407 NBPF4Q96M43 638 aa12.98□□□□□ -0.33
PTPRF-203ENST00000372407 SELENOOQ9BVL4 669 aa12.98□□□□□ -0.33
PTPRF-203ENST00000372407 MMRN2Q9H8L6 949 aa12.98□□□□□ -0.33
PTPRF-203ENST00000372407 GNAT2P19087 354 aa12.98□□□□□ -0.33
PTPRF-203ENST00000372407 ACTN2P35609 894 aa12.98□□□□□ -0.33
PTPRF-203ENST00000372407 CCDC155Q8N6L0 562 aa12.98□□□□□ -0.33
PTPRF-203ENST00000372407 GTPBP4Q9BZE4 634 aaKnown RBP12.98□□□□□ -0.33
PTPRF-203ENST00000372407 USP21Q9UK80 565 aa12.98□□□□□ -0.33
PTPRF-203ENST00000372407 IVLP07476 585 aa12.98□□□□□ -0.33
PTPRF-203ENST00000372407 SLC4A8Q2Y0W8 1093 aa12.98□□□□□ -0.33
PTPRF-203ENST00000372407 CHST3Q7LGC8 479 aa12.98□□□□□ -0.33
PTPRF-203ENST00000372407 NLRP3Q96P20 1036 aa12.98□□□□□ -0.33
PTPRF-203ENST00000372407 HEATR3Q7Z4Q2 680 aa12.97□□□□□ -0.33
PTPRF-203ENST00000372407 DRC1Q96MC2 740 aa12.97□□□□□ -0.33
PTPRF-203ENST00000372407 ZMYND15Q9H091 742 aa12.97□□□□□ -0.33
PTPRF-203ENST00000372407 CDC42BPBQ9Y5S2 1711 aa12.97□□□□□ -0.33
PTPRF-203ENST00000372407 WDR78Q5VTH9 848 aa12.97□□□□□ -0.33
PTPRF-203ENST00000372407 TBC1D5Q92609 795 aa12.97□□□□□ -0.33
PTPRF-203ENST00000372407 EYA1Q99502 592 aa12.97□□□□□ -0.33
PTPRF-203ENST00000372407 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.97□□□□□ -0.33
PTPRF-203ENST00000372407 USP37Q86T82 979 aa12.97□□□□□ -0.33
PTPRF-203ENST00000372407 PLEKHG3A1L390 1219 aa12.97□□□□□ -0.33
PTPRF-203ENST00000372407 OPA1O60313 960 aa12.97□□□□□ -0.33
PTPRF-203ENST00000372407 IQUBQ8NA54 791 aa12.97□□□□□ -0.33
PTPRF-203ENST00000372407 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.97□□□□□ -0.33
PTPRF-203ENST00000372407 COL17A1Q9UMD9 1497 aaPredicted RBP12.96□□□□□ -0.33
PTPRF-203ENST00000372407 A0A1W2PP64 1363 aa12.96□□□□□ -0.33
PTPRF-203ENST00000372407 SBNO2Q9Y2G9 1366 aa12.96□□□□□ -0.33
PTPRF-203ENST00000372407 NAPAP54920 295 aa12.96□□□□□ -0.33
PTPRF-203ENST00000372407 DDX12PQ92771 950 aa12.96□□□□□ -0.33
PTPRF-203ENST00000372407 CDCA7Q9BWT1 371 aaPredicted RBP12.96□□□□□ -0.33
PTPRF-203ENST00000372407 DDX21Q9NR30 783 aaKnown RBP eCLIP12.96□□□□□ -0.33
PTPRF-203ENST00000372407 STAMBPO95630 424 aa12.96□□□□□ -0.33
PTPRF-203ENST00000372407 MYL5Q02045 173 aa12.96□□□□□ -0.33
PTPRF-203ENST00000372407 NFATC2IPQ8NCF5 419 aa12.96□□□□□ -0.33
PTPRF-203ENST00000372407 PTPRTO14522 1441 aa12.96□□□□□ -0.33
PTPRF-203ENST00000372407 PRPHP41219 470 aa12.96□□□□□ -0.34
PTPRF-203ENST00000372407 STX17P56962 302 aa12.96□□□□□ -0.34
PTPRF-203ENST00000372407 FAM160A1Q05DH4 1040 aa12.96□□□□□ -0.34
PTPRF-203ENST00000372407 ACSBG1Q96GR2 724 aa12.96□□□□□ -0.34
PTPRF-203ENST00000372407 C6orf50Q9HD87 102 aa12.96□□□□□ -0.34
PTPRF-203ENST00000372407 HOMER2Q9NSB8 354 aa12.96□□□□□ -0.34
PTPRF-203ENST00000372407 KRT79Q5XKE5 535 aa12.95□□□□□ -0.34
PTPRF-203ENST00000372407 LUC7L2Q9Y383 392 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms