RNA–Protein interactions for RNA: ENST00000369746.2

UBE3D-202, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 2,740 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-202ENST00000369746 ZSCAN30Q86W11 494 aa6.07□□□□□ -1.44
UBE3D-202ENST00000369746 MPHOSPH6Q99547 160 aaKnown RBP6.07□□□□□ -1.44
UBE3D-202ENST00000369746 JADE2Q9NQC1 790 aa6.07□□□□□ -1.44
UBE3D-202ENST00000369746 SNED1Q8TER0 1413 aa6.07□□□□□ -1.44
UBE3D-202ENST00000369746 CCDC85CA6NKD9 419 aa6.07□□□□□ -1.44
UBE3D-202ENST00000369746 KIF1CO43896 1103 aaKnown RBP6.07□□□□□ -1.44
UBE3D-202ENST00000369746 FAM163BP0C2L3 166 aa6.07□□□□□ -1.44
UBE3D-202ENST00000369746 BMS1Q14692 1282 aaKnown RBP6.07□□□□□ -1.44
UBE3D-202ENST00000369746 GPC2Q8N158 579 aa6.07□□□□□ -1.44
UBE3D-202ENST00000369746 MICALL1Q8N3F8 863 aa6.07□□□□□ -1.44
UBE3D-202ENST00000369746 SEZ6LQ9BYH1 1024 aa6.07□□□□□ -1.44
UBE3D-202ENST00000369746 TRAK1Q9UPV9 953 aa6.07□□□□□ -1.44
UBE3D-202ENST00000369746 FRAT2O75474 233 aaPredicted RBP6.06□□□□□ -1.44
UBE3D-202ENST00000369746 NAP1L1P55209 391 aaKnown RBP6.06□□□□□ -1.44
UBE3D-202ENST00000369746 MKRN4PQ13434 485 aaPredicted RBP6.06□□□□□ -1.44
UBE3D-202ENST00000369746 UVSSAQ2YD98 709 aa6.06□□□□□ -1.44
UBE3D-202ENST00000369746 KANK3Q6NY19 840 aa6.06□□□□□ -1.44
UBE3D-202ENST00000369746 NT5DC4Q86YG4 428 aa6.06□□□□□ -1.44
UBE3D-202ENST00000369746 RAVER1Q8IY67 606 aaKnown RBP6.06□□□□□ -1.44
UBE3D-202ENST00000369746 RTKN2Q8IZC4 609 aa6.06□□□□□ -1.44
UBE3D-202ENST00000369746 SCYL1Q96KG9 808 aa6.06□□□□□ -1.44
UBE3D-202ENST00000369746 PPP1R9BQ96SB3 815 aa6.06□□□□□ -1.44
UBE3D-202ENST00000369746 NLRP2Q9NX02 1062 aa6.06□□□□□ -1.44
UBE3D-202ENST00000369746 SYNPO2Q9UMS6 1093 aa6.06□□□□□ -1.44
UBE3D-202ENST00000369746 FLT4P35916 1363 aa6.06□□□□□ -1.44
UBE3D-202ENST00000369746 ANKRD31Q8N7Z5 1873 aa6.06□□□□□ -1.44
UBE3D-202ENST00000369746 PAPPA2Q9BXP8 1791 aa6.06□□□□□ -1.44
UBE3D-202ENST00000369746 POLRMTO00411 1230 aaKnown RBP6.06□□□□□ -1.44
UBE3D-202ENST00000369746 CCDC70Q6NSX1 233 aa6.06□□□□□ -1.44
UBE3D-202ENST00000369746 HDGFL2Q7Z4V5 671 aaPredicted RBP6.06□□□□□ -1.44
UBE3D-202ENST00000369746 ACSBG1Q96GR2 724 aa6.06□□□□□ -1.44
UBE3D-202ENST00000369746 CAPNS2Q96L46 248 aa6.06□□□□□ -1.44
UBE3D-202ENST00000369746 FAM13BQ9NYF5 915 aa6.06□□□□□ -1.44
UBE3D-202ENST00000369746 FZD9O00144 591 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 LDHCP07864 332 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 FLT3P36888 993 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 CCDC173Q0VFZ6 552 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 TSR2Q969E8 191 aaKnown RBP6.05□□□□□ -1.44
UBE3D-202ENST00000369746 TIGD1Q96MW7 591 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 BRIP1Q9BX63 1249 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 CALCOCO1Q9P1Z2 691 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 CEP83Q9Y592 693 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 COL1A1P02452 1464 aaPredicted RBP6.05□□□□□ -1.44
UBE3D-202ENST00000369746 MPHOSPH10O00566 681 aaKnown RBP6.05□□□□□ -1.44
UBE3D-202ENST00000369746 TBC1D12O60347 775 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 FXR1P51114 621 aaKnown RBP eCLIP6.05□□□□□ -1.44
UBE3D-202ENST00000369746 SRPK2P78362 688 aaKnown RBP6.05□□□□□ -1.44
UBE3D-202ENST00000369746 FBXO46Q6PJ61 603 aaPredicted RBP6.05□□□□□ -1.44
UBE3D-202ENST00000369746 SASS6Q6UVJ0 657 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 JAZF1Q86VZ6 243 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 RAPGEF4Q8WZA2 1011 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 FEZ1Q99689 392 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 NCAPGQ9BPX3 1015 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 TANGO6Q9C0B7 1094 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 SPC25Q9HBM1 224 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 DDX21Q9NR30 783 aaKnown RBP eCLIP6.05□□□□□ -1.44
UBE3D-202ENST00000369746 SCN11AQ9UI33 1791 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 GTF2F1P35269 517 aaKnown RBP eCLIP6.05□□□□□ -1.44
UBE3D-202ENST00000369746 DHX8Q14562 1220 aaKnown RBP6.05□□□□□ -1.44
UBE3D-202ENST00000369746 TSNAXIP1Q2TAA8 658 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 ARMC3Q5W041 872 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 PARP9Q8IXQ6 854 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 LINC00116Q8NCU8 138 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 JDP2Q8WYK2 163 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 CDC5LQ99459 802 aaKnown RBP6.05□□□□□ -1.44
UBE3D-202ENST00000369746 CHST12Q9NRB3 414 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 COL4A3BPQ9Y5P4 624 aa6.05□□□□□ -1.44
UBE3D-202ENST00000369746 U3KPZ7 1027 aaPredicted RBP6.05□□□□□ -1.44
UBE3D-202ENST00000369746 AKAP11Q9UKA4 1901 aa6.04□□□□□ -1.44
UBE3D-202ENST00000369746 KIF7Q2M1P5 1343 aa6.04□□□□□ -1.44
UBE3D-202ENST00000369746 COL11A2P13942 1736 aaPredicted RBP6.04□□□□□ -1.44
UBE3D-202ENST00000369746 HOXC9P31274 260 aa6.04□□□□□ -1.44
UBE3D-202ENST00000369746 HNRNPUQ00839 825 aaKnown RBP eCLIP6.04□□□□□ -1.44
UBE3D-202ENST00000369746 BECN1Q14457 450 aa6.04□□□□□ -1.44
UBE3D-202ENST00000369746 MNS1Q8NEH6 495 aa6.04□□□□□ -1.44
UBE3D-202ENST00000369746 NFKBIEO00221 500 aa6.04□□□□□ -1.44
UBE3D-202ENST00000369746 CD53P19397 219 aa6.04□□□□□ -1.44
UBE3D-202ENST00000369746 ERCC5P28715 1186 aaPredicted RBP6.04□□□□□ -1.44
UBE3D-202ENST00000369746 FKBP4Q02790 459 aaKnown RBP eCLIP6.04□□□□□ -1.44
UBE3D-202ENST00000369746 DGKZQ13574 1117 aa6.04□□□□□ -1.44
UBE3D-202ENST00000369746 FAM109BQ6ICB4 259 aaPredicted RBP6.04□□□□□ -1.44
UBE3D-202ENST00000369746 NPAS4Q8IUM7 802 aa6.04□□□□□ -1.44
UBE3D-202ENST00000369746 GLMNQ92990 594 aa6.04□□□□□ -1.44
UBE3D-202ENST00000369746 ITFG2Q969R8 447 aa6.04□□□□□ -1.44
UBE3D-202ENST00000369746 ZBTB9Q96C00 473 aa6.04□□□□□ -1.44
UBE3D-202ENST00000369746 ERBB4Q15303 1308 aa6.03□□□□□ -1.44
UBE3D-202ENST00000369746 H0YIN7 160 aa6.03□□□□□ -1.44
UBE3D-202ENST00000369746 HMGN5P82970 282 aaKnown RBP6.03□□□□□ -1.44
UBE3D-202ENST00000369746 GPIHBP1Q8IV16 184 aa6.03□□□□□ -1.44
UBE3D-202ENST00000369746 CCAR1Q8IX12 1150 aaKnown RBP6.03□□□□□ -1.44
UBE3D-202ENST00000369746 TAOK3Q9H2K8 898 aa6.03□□□□□ -1.44
UBE3D-202ENST00000369746 NARFQ9UHQ1 456 aa6.03□□□□□ -1.44
UBE3D-202ENST00000369746 TCEAL9Q9UHQ7 104 aa6.03□□□□□ -1.44
UBE3D-202ENST00000369746 KIF16BQ96L93 1317 aa6.03□□□□□ -1.44
UBE3D-202ENST00000369746 CCDC172P0C7W6 258 aa6.03□□□□□ -1.44
UBE3D-202ENST00000369746 RFC4P35249 363 aa6.03□□□□□ -1.44
UBE3D-202ENST00000369746 HDLBPQ00341 1268 aaKnown RBP6.03□□□□□ -1.44
UBE3D-202ENST00000369746 ZC3H12AQ5D1E8 599 aaKnown RBP6.03□□□□□ -1.44
UBE3D-202ENST00000369746 NOP9Q86U38 636 aaKnown RBP6.03□□□□□ -1.44
UBE3D-202ENST00000369746 PBXIP1Q96AQ6 731 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms