RNA–Protein interactions for RNA: ENST00000366290.2

YBX3-204, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 512 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-204ENST00000366290 COL25A1Q9BXS0 654 aaPredicted RBP11.35□□□□□ -0.59
YBX3-204ENST00000366290 TMEM94Q12767 1356 aa11.34□□□□□ -0.59
YBX3-204ENST00000366290 LBRQ14739 615 aaKnown RBP11.34□□□□□ -0.59
YBX3-204ENST00000366290 SV2AQ7L0J3 742 aa11.34□□□□□ -0.59
YBX3-204ENST00000366290 GJD3Q8N144 294 aa11.34□□□□□ -0.59
YBX3-204ENST00000366290 PIK3R5Q8WYR1 880 aa11.34□□□□□ -0.59
YBX3-204ENST00000366290 NUDT16Q96DE0 195 aaKnown RBP11.34□□□□□ -0.59
YBX3-204ENST00000366290 CEP63Q96MT8 703 aa11.34□□□□□ -0.59
YBX3-204ENST00000366290 FAM129BQ96TA1 746 aa11.34□□□□□ -0.59
YBX3-204ENST00000366290 PCSK2P16519 638 aa11.33□□□□□ -0.6
YBX3-204ENST00000366290 PDE3BQ13370 1112 aa11.33□□□□□ -0.6
YBX3-204ENST00000366290 SAMD5Q5TGI4 173 aa11.33□□□□□ -0.6
YBX3-204ENST00000366290 ZNF837Q96EG3 531 aaPredicted RBP11.33□□□□□ -0.6
YBX3-204ENST00000366290 DMRTB1Q96MA1 342 aa11.33□□□□□ -0.6
YBX3-204ENST00000366290 NCOA3Q9Y6Q9 1424 aa11.33□□□□□ -0.6
YBX3-204ENST00000366290 RPGRIP1LQ68CZ1 1315 aa11.33□□□□□ -0.6
YBX3-204ENST00000366290 IGHA2P01877 340 aa11.32□□□□□ -0.6
YBX3-204ENST00000366290 THBS1P07996 1170 aa11.32□□□□□ -0.6
YBX3-204ENST00000366290 NPM2Q86SE8 214 aaKnown RBP11.32□□□□□ -0.6
YBX3-204ENST00000366290 CNTNAP3BQ96NU0 1288 aa11.32□□□□□ -0.6
YBX3-204ENST00000366290 CNTNAP3Q9BZ76 1288 aa11.32□□□□□ -0.6
YBX3-204ENST00000366290 USP20Q9Y2K6 914 aa11.32□□□□□ -0.6
YBX3-204ENST00000366290 SPATA31E1Q6ZUB1 1445 aa11.32□□□□□ -0.6
YBX3-204ENST00000366290 PPLO60437 1756 aa11.31□□□□□ -0.6
YBX3-204ENST00000366290 GPR182O15218 404 aa11.31□□□□□ -0.6
YBX3-204ENST00000366290 TREHO43280 583 aa11.31□□□□□ -0.6
YBX3-204ENST00000366290 TRIM22Q8IYM9 498 aa11.31□□□□□ -0.6
YBX3-204ENST00000366290 ZCCHC2Q9C0B9 1178 aaKnown RBP11.31□□□□□ -0.6
YBX3-204ENST00000366290 NUCKS1Q9H1E3 243 aaKnown RBP11.31□□□□□ -0.6
YBX3-204ENST00000366290 RTCBQ9Y3I0 505 aaKnown RBP11.31□□□□□ -0.6
YBX3-204ENST00000366290 CCDC144AA2RUR9 1427 aa11.31□□□□□ -0.6
YBX3-204ENST00000366290 XRN1Q8IZH2 1706 aaKnown RBP11.3□□□□□ -0.6
YBX3-204ENST00000366290 H7C1W4 665 aa11.3□□□□□ -0.6
YBX3-204ENST00000366290 RPLP1P05386 114 aaKnown RBP11.3□□□□□ -0.6
YBX3-204ENST00000366290 DBN1Q16643 649 aa11.3□□□□□ -0.6
YBX3-204ENST00000366290 ZNF326Q5BKZ1 582 aaKnown RBP11.3□□□□□ -0.6
YBX3-204ENST00000366290 FIGNL1Q6PIW4 674 aa11.3□□□□□ -0.6
YBX3-204ENST00000366290 CMTR1Q8N1G2 835 aaKnown RBP11.3□□□□□ -0.6
YBX3-204ENST00000366290 BCL2L13Q9BXK5 485 aa11.3□□□□□ -0.6
YBX3-204ENST00000366290 GGNBP2Q9H3C7 697 aa11.3□□□□□ -0.6
YBX3-204ENST00000366290 BRD7Q9NPI1 651 aa11.3□□□□□ -0.6
YBX3-204ENST00000366290 ROBO1Q9Y6N7 1651 aa11.3□□□□□ -0.6
YBX3-204ENST00000366290 SETD1AO15047 1707 aaKnown RBP11.29□□□□□ -0.6
YBX3-204ENST00000366290 ATXN7O15265 892 aaPredicted RBP11.29□□□□□ -0.6
YBX3-204ENST00000366290 EPB42P16452 691 aa11.29□□□□□ -0.6
YBX3-204ENST00000366290 GRNP28799 593 aaKnown RBP11.29□□□□□ -0.6
YBX3-204ENST00000366290 COL19A1Q14993 1142 aa11.29□□□□□ -0.6
YBX3-204ENST00000366290 C8orf34Q49A92 452 aa11.29□□□□□ -0.6
YBX3-204ENST00000366290 ZNF428Q96B54 188 aa11.29□□□□□ -0.6
YBX3-204ENST00000366290 PCGF6Q9BYE7 350 aa11.29□□□□□ -0.6
YBX3-204ENST00000366290 IFT172Q9UG01 1749 aa11.29□□□□□ -0.6
YBX3-204ENST00000366290 PRAG1Q86YV5 1406 aa11.28□□□□□ -0.6
YBX3-204ENST00000366290 PTPRUQ92729 1446 aa11.28□□□□□ -0.6
YBX3-204ENST00000366290 FAM157BP0CG42 384 aa11.28□□□□□ -0.6
YBX3-204ENST00000366290 UBAP2LQ14157 1087 aaKnown RBP11.28□□□□□ -0.6
YBX3-204ENST00000366290 GAS6Q14393 721 aa11.28□□□□□ -0.6
YBX3-204ENST00000366290 DSC3Q14574 896 aa11.28□□□□□ -0.6
YBX3-204ENST00000366290 TTC16Q8NEE8 873 aa11.28□□□□□ -0.6
YBX3-204ENST00000366290 ALKBH8Q96BT7 664 aaKnown RBP11.28□□□□□ -0.6
YBX3-204ENST00000366290 GMCL1Q96IK5 515 aa11.28□□□□□ -0.6
YBX3-204ENST00000366290 PCDHGC4Q9Y5F7 938 aa11.28□□□□□ -0.6
YBX3-204ENST00000366290 KCNMB2Q9Y691 235 aa11.28□□□□□ -0.6
YBX3-204ENST00000366290 RBM47A0AV96 593 aaKnown RBP11.27□□□□□ -0.61
YBX3-204ENST00000366290 A6NHS1 94 aa11.27□□□□□ -0.61
YBX3-204ENST00000366290 RBM25P49756 843 aaKnown RBP11.27□□□□□ -0.61
YBX3-204ENST00000366290 FMR1Q06787 632 aaKnown RBP eCLIP11.27□□□□□ -0.61
YBX3-204ENST00000366290 EHHADHQ08426 723 aa11.27□□□□□ -0.61
YBX3-204ENST00000366290 TRIP4Q15650 581 aaPredicted RBP11.27□□□□□ -0.61
YBX3-204ENST00000366290 METP08581 1390 aa11.27□□□□□ -0.61
YBX3-204ENST00000366290 P4HBP07237 508 aaKnown RBP11.26□□□□□ -0.61
YBX3-204ENST00000366290 PLCB3Q01970 1234 aa11.26□□□□□ -0.61
YBX3-204ENST00000366290 FBXO33Q7Z6M2 555 aa11.26□□□□□ -0.61
YBX3-204ENST00000366290 GIPC2Q8TF65 315 aa11.26□□□□□ -0.61
YBX3-204ENST00000366290 NIF3L1Q9GZT8 377 aa11.26□□□□□ -0.61
YBX3-204ENST00000366290 FNDC3AQ9Y2H6 1198 aaKnown RBP11.26□□□□□ -0.61
YBX3-204ENST00000366290 ANKRD30BQ9BXX2 1392 aa11.26□□□□□ -0.61
YBX3-204ENST00000366290 DCDC2BA2VCK2 349 aa11.25□□□□□ -0.61
YBX3-204ENST00000366290 KHNYNO15037 678 aaKnown RBP11.25□□□□□ -0.61
YBX3-204ENST00000366290 EFSO43281 561 aa11.25□□□□□ -0.61
YBX3-204ENST00000366290 MSH6P52701 1360 aa11.25□□□□□ -0.61
YBX3-204ENST00000366290 GPR25O00155 361 aa11.24□□□□□ -0.61
YBX3-204ENST00000366290 SLURP2P0DP57 97 aa11.24□□□□□ -0.61
YBX3-204ENST00000366290 KCNQ4P56696 695 aa11.24□□□□□ -0.61
YBX3-204ENST00000366290 TNP2Q05952 138 aa11.24□□□□□ -0.61
YBX3-204ENST00000366290 EAPPQ56P03 285 aaPredicted RBP11.24□□□□□ -0.61
YBX3-204ENST00000366290 KCNH4Q9UQ05 1017 aa11.24□□□□□ -0.61
YBX3-204ENST00000366290 NRXN1Q9ULB1 1477 aa11.24□□□□□ -0.61
YBX3-204ENST00000366290 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.23□□□□□ -0.61
YBX3-204ENST00000366290 FAM181BA6NEQ2 426 aa11.23□□□□□ -0.61
YBX3-204ENST00000366290 BNIP3LO60238 219 aa11.23□□□□□ -0.61
YBX3-204ENST00000366290 XYLBO75191 536 aa11.23□□□□□ -0.61
YBX3-204ENST00000366290 MAPTP10636 758 aaKnown RBP11.23□□□□□ -0.61
YBX3-204ENST00000366290 ZNF16P17020 682 aaPredicted RBP11.23□□□□□ -0.61
YBX3-204ENST00000366290 MAPK8P45983 427 aa11.23□□□□□ -0.61
YBX3-204ENST00000366290 SFSWAPQ12872 951 aaKnown RBP11.23□□□□□ -0.61
YBX3-204ENST00000366290 C19orf44Q9H6X5 657 aa11.23□□□□□ -0.61
YBX3-204ENST00000366290 NDFIP2Q9NV92 336 aa11.23□□□□□ -0.61
YBX3-204ENST00000366290 PIK3C2GO75747 1445 aa11.23□□□□□ -0.61
YBX3-204ENST00000366290 DCCP43146 1447 aa11.23□□□□□ -0.61
YBX3-204ENST00000366290 PTCH1Q13635 1447 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms