RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 ZNF804AQ7Z570 1209 aa11.51□□□□□ -0.57
CLIP1-202ENST00000358808 CCDC110Q8TBZ0 833 aa11.51□□□□□ -0.57
CLIP1-202ENST00000358808 ATRIPQ8WXE1 791 aa11.51□□□□□ -0.57
CLIP1-202ENST00000358808 SEC62Q99442 399 aaKnown RBP11.51□□□□□ -0.57
CLIP1-202ENST00000358808 SLC4A4Q9Y6R1 1079 aa11.51□□□□□ -0.57
CLIP1-202ENST00000358808 HARSP12081 509 aaKnown RBP11.51□□□□□ -0.57
CLIP1-202ENST00000358808 AFG3L2Q9Y4W6 797 aa11.51□□□□□ -0.57
CLIP1-202ENST00000358808 PTGS1P23219 599 aa11.5□□□□□ -0.57
CLIP1-202ENST00000358808 KCNK9Q9NPC2 374 aa11.5□□□□□ -0.57
CLIP1-202ENST00000358808 KDM6BO15054 1643 aa11.5□□□□□ -0.57
CLIP1-202ENST00000358808 VPS52Q8N1B4 723 aa11.5□□□□□ -0.57
CLIP1-202ENST00000358808 KRT23Q9C075 422 aa11.5□□□□□ -0.57
CLIP1-202ENST00000358808 USP25Q9UHP3 1055 aa11.5□□□□□ -0.57
CLIP1-202ENST00000358808 FEZ2Q9UHY8 353 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-202ENST00000358808 NPHP3Q7Z494 1330 aa11.5□□□□□ -0.57
CLIP1-202ENST00000358808 MAST1Q9Y2H9 1570 aa11.5□□□□□ -0.57
CLIP1-202ENST00000358808 DAPK3O43293 454 aa11.5□□□□□ -0.57
CLIP1-202ENST00000358808 CCDC25Q86WR0 208 aa11.5□□□□□ -0.57
CLIP1-202ENST00000358808 ZCRB1Q8TBF4 217 aaKnown RBP11.5□□□□□ -0.57
CLIP1-202ENST00000358808 C14orf93Q9H972 538 aaKnown RBP11.5□□□□□ -0.57
CLIP1-202ENST00000358808 AGTPBP1Q9UPW5 1226 aa11.5□□□□□ -0.57
CLIP1-202ENST00000358808 ACEP12821 1306 aa11.5□□□□□ -0.57
CLIP1-202ENST00000358808 CTAGE1Q96RT6 745 aa11.5□□□□□ -0.57
CLIP1-202ENST00000358808 PARP3Q9Y6F1 533 aa11.5□□□□□ -0.57
CLIP1-202ENST00000358808 F6X3S4 739 aa11.5□□□□□ -0.57
CLIP1-202ENST00000358808 PPP2R5CQ13362 524 aa11.5□□□□□ -0.57
CLIP1-202ENST00000358808 FAM204AQ9H8W3 233 aa11.5□□□□□ -0.57
CLIP1-202ENST00000358808 C11orf95C9JLR9 678 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-202ENST00000358808 KRT5P13647 590 aa11.49□□□□□ -0.57
CLIP1-202ENST00000358808 INF2Q27J81 1249 aa11.49□□□□□ -0.57
CLIP1-202ENST00000358808 TBC1D31Q96DN5 1066 aa11.49□□□□□ -0.57
CLIP1-202ENST00000358808 IQSEC3Q9UPP2 1182 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-202ENST00000358808 BRDTQ58F21 947 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-202ENST00000358808 GJA3Q9Y6H8 435 aa11.49□□□□□ -0.57
CLIP1-202ENST00000358808 MAGI2Q86UL8 1455 aa11.49□□□□□ -0.57
CLIP1-202ENST00000358808 TACC1O75410 805 aa11.49□□□□□ -0.57
CLIP1-202ENST00000358808 DDB1Q16531 1140 aa11.49□□□□□ -0.57
CLIP1-202ENST00000358808 GIPC1O14908 333 aa11.49□□□□□ -0.57
CLIP1-202ENST00000358808 SNRPA1P09661 255 aaKnown RBP11.49□□□□□ -0.57
CLIP1-202ENST00000358808 TMCO4Q5TGY1 634 aa11.49□□□□□ -0.57
CLIP1-202ENST00000358808 PKD2L1Q9P0L9 805 aa11.49□□□□□ -0.57
CLIP1-202ENST00000358808 CIB2O75838 187 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 HSPA1LP34931 641 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 SYKP43405 635 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 NEK1Q96PY6 1258 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 CTAGE15A4D2H0 777 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 CTAGE8P0CG41 777 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 ALDH1L2Q3SY69 923 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 HSP90AA4PQ58FG1 418 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 CTAGE6Q86UF2 777 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 CTAGE4Q8IX94 777 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 RRP36Q96EU6 259 aaKnown RBP11.48□□□□□ -0.57
CLIP1-202ENST00000358808 KIF3CO14782 793 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 SEPT14Q6ZU15 432 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 ESR2Q92731 530 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 RIMBP3CA6NJZ7 1639 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 RIMBP3BA6NNM3 1639 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 RIMBP3Q9UFD9 1639 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 OPA1O60313 960 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 KRT9P35527 623 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 TNNI2P48788 182 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 IRX5P78411 483 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-202ENST00000358808 HS2ST1Q7LGA3 356 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 CLSTN2Q9H4D0 955 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 TFCP2L1Q9NZI6 479 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 SCAF11Q99590 1463 aaKnown RBP11.48□□□□□ -0.57
CLIP1-202ENST00000358808 ABCC11Q96J66 1382 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 PSMA7O14818 248 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 CLGNO14967 610 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 ERCC5P28715 1186 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-202ENST00000358808 GNAQP50148 359 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 NAA25Q14CX7 972 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 RTN1Q16799 776 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 STIM2Q9P246 746 aa11.48□□□□□ -0.57
CLIP1-202ENST00000358808 SSFA2P28290 1259 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 MCM5P33992 734 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 UBASH3AP57075 661 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 PPP2R5DQ14738 602 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 CEP120Q8N960 986 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 JARID2Q92833 1246 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-202ENST00000358808 FAM184BQ9ULE4 1060 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 KLF18A0A0U1RQI7 1052 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 BMP15O95972 392 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 SLFN5Q08AF3 891 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 BIRC3Q13489 604 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 NAA16Q6N069 864 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-202ENST00000358808 RIMBP2O15034 1052 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 WDR44Q5JSH3 913 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 CCDC121Q6ZUS5 278 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 ANKFY1Q9P2R3 1169 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 ZBTB43O43298 467 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 SARNPP82979 210 aaKnown RBP11.47□□□□□ -0.57
CLIP1-202ENST00000358808 SETDB1Q15047 1291 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 KRT79Q5XKE5 535 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 TBC1D2Q9BYX2 928 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-202ENST00000358808 WDR46O15213 610 aaKnown RBP11.47□□□□□ -0.57
CLIP1-202ENST00000358808 STX10O60499 249 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 CLUL1Q15846 466 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 JAKMIP2Q96AA8 810 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms