RNA–Protein interactions for RNA: ENST00000354901.8

SMG6-202, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best) BASIC

Gene SMG6, Length 3,473 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-202ENST00000354901 ATP5JP18859 108 aa10.91□□□□□ -0.66
SMG6-202ENST00000354901 CASQ1P31415 396 aa10.91□□□□□ -0.66
SMG6-202ENST00000354901 TYRO3Q06418 890 aa10.91□□□□□ -0.66
SMG6-202ENST00000354901 FUCA2Q9BTY2 467 aa10.91□□□□□ -0.66
SMG6-202ENST00000354901 EFCC1Q9HA90 598 aa10.91□□□□□ -0.66
SMG6-202ENST00000354901 NCOA5Q9HCD5 579 aaKnown RBP10.91□□□□□ -0.66
SMG6-202ENST00000354901 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.91□□□□□ -0.66
SMG6-202ENST00000354901 SLAIN2Q9P270 581 aa10.91□□□□□ -0.66
SMG6-202ENST00000354901 MED23Q9ULK4 1368 aa10.91□□□□□ -0.66
SMG6-202ENST00000354901 A1BGP04217 495 aa10.91□□□□□ -0.66
SMG6-202ENST00000354901 RFX5P48382 616 aaPredicted RBP10.91□□□□□ -0.66
SMG6-202ENST00000354901 ANO6Q4KMQ2 910 aa10.91□□□□□ -0.66
SMG6-202ENST00000354901 ICE2Q659A1 982 aa10.91□□□□□ -0.66
SMG6-202ENST00000354901 FAM177A1Q8N128 213 aaPredicted RBP10.91□□□□□ -0.66
SMG6-202ENST00000354901 LEO1Q8WVC0 666 aaPredicted RBP10.91□□□□□ -0.66
SMG6-202ENST00000354901 FAM212AQ96EL1 285 aa10.91□□□□□ -0.66
SMG6-202ENST00000354901 ABCA3Q99758 1704 aa10.91□□□□□ -0.66
SMG6-202ENST00000354901 NR1I2O75469 434 aa10.9□□□□□ -0.66
SMG6-202ENST00000354901 IBSPP21815 317 aaPredicted RBP10.9□□□□□ -0.66
SMG6-202ENST00000354901 APOBRQ0VD83 1088 aa10.9□□□□□ -0.66
SMG6-202ENST00000354901 HSP90AB3PQ58FF7 597 aa10.9□□□□□ -0.66
SMG6-202ENST00000354901 RAB11FIP4Q86YS3 637 aa10.9□□□□□ -0.66
SMG6-202ENST00000354901 MYCBPQ99417 103 aaPredicted RBP10.9□□□□□ -0.66
SMG6-202ENST00000354901 EPC1Q9H2F5 836 aa10.9□□□□□ -0.66
SMG6-202ENST00000354901 PKD1L3Q7Z443 1732 aa10.9□□□□□ -0.66
SMG6-202ENST00000354901 SLU7O95391 586 aaKnown RBP10.9□□□□□ -0.66
SMG6-202ENST00000354901 GPS2Q13227 327 aa10.9□□□□□ -0.66
SMG6-202ENST00000354901 MCMDC2Q4G0Z9 681 aa10.9□□□□□ -0.66
SMG6-202ENST00000354901 HOMER1Q86YM7 354 aa10.9□□□□□ -0.66
SMG6-202ENST00000354901 SIPA1L3O60292 1781 aaPredicted RBP10.9□□□□□ -0.66
SMG6-202ENST00000354901 ZNF609O15014 1411 aa10.9□□□□□ -0.66
SMG6-202ENST00000354901 CLCN6P51797 869 aa10.9□□□□□ -0.66
SMG6-202ENST00000354901 LRRC24Q50LG9 513 aa10.9□□□□□ -0.66
SMG6-202ENST00000354901 TMCO3Q6UWJ1 677 aa10.9□□□□□ -0.66
SMG6-202ENST00000354901 STOX1Q6ZVD7 989 aa10.9□□□□□ -0.66
SMG6-202ENST00000354901 HMG20BQ9P0W2 317 aa10.9□□□□□ -0.66
SMG6-202ENST00000354901 MEGF6O75095 1541 aa10.9□□□□□ -0.67
SMG6-202ENST00000354901 ZNF335Q9H4Z2 1342 aaPredicted RBP10.9□□□□□ -0.67
SMG6-202ENST00000354901 FKBP4Q02790 459 aaKnown RBP eCLIP10.89□□□□□ -0.67
SMG6-202ENST00000354901 CCDC144BQ3MJ40 725 aa10.89□□□□□ -0.67
SMG6-202ENST00000354901 CCDC144CPQ8IYA2 1237 aa10.89□□□□□ -0.67
SMG6-202ENST00000354901 ERCC4Q92889 916 aaPredicted RBP10.89□□□□□ -0.67
SMG6-202ENST00000354901 DCAF5Q96JK2 942 aa10.89□□□□□ -0.67
SMG6-202ENST00000354901 SCAND2PQ9GZW5 306 aaPredicted RBP10.89□□□□□ -0.67
SMG6-202ENST00000354901 DNAJC25Q9H1X3 360 aa10.89□□□□□ -0.67
SMG6-202ENST00000354901 MRVI1Q9Y6F6 885 aa10.89□□□□□ -0.67
SMG6-202ENST00000354901 PARP4Q9UKK3 1724 aaKnown RBP10.89□□□□□ -0.67
SMG6-202ENST00000354901 PNMA6AP0CW24 399 aaPredicted RBP10.89□□□□□ -0.67
SMG6-202ENST00000354901 SKILP12757 684 aa10.89□□□□□ -0.67
SMG6-202ENST00000354901 HAND2P61296 217 aa10.89□□□□□ -0.67
SMG6-202ENST00000354901 SCRN1Q12765 414 aa10.89□□□□□ -0.67
SMG6-202ENST00000354901 PGBD1Q96JS3 809 aa10.89□□□□□ -0.67
SMG6-202ENST00000354901 KAT6BQ8WYB5 2073 aa10.89□□□□□ -0.67
SMG6-202ENST00000354901 OAS2P29728 719 aaKnown RBP10.89□□□□□ -0.67
SMG6-202ENST00000354901 NOP2P46087 812 aaKnown RBP10.89□□□□□ -0.67
SMG6-202ENST00000354901 TPM4P67936 248 aa10.89□□□□□ -0.67
SMG6-202ENST00000354901 TXLNBQ8N3L3 684 aa10.89□□□□□ -0.67
SMG6-202ENST00000354901 FAM200AQ8TCP9 573 aa10.89□□□□□ -0.67
SMG6-202ENST00000354901 PUS3Q9BZE2 481 aaKnown RBP10.89□□□□□ -0.67
SMG6-202ENST00000354901 PLEKHA4Q9H4M7 779 aa10.89□□□□□ -0.67
SMG6-202ENST00000354901 NBPF26B4DH59 902 aa10.88□□□□□ -0.67
SMG6-202ENST00000354901 KRT32Q14532 448 aa10.88□□□□□ -0.67
SMG6-202ENST00000354901 TTC31Q49AM3 519 aaPredicted RBP10.88□□□□□ -0.67
SMG6-202ENST00000354901 NBPF14Q5TI25 921 aa10.88□□□□□ -0.67
SMG6-202ENST00000354901 NBPF10Q6P3W6 841 aaKnown RBP10.88□□□□□ -0.67
SMG6-202ENST00000354901 LRP10Q7Z4F1 713 aa10.88□□□□□ -0.67
SMG6-202ENST00000354901 NBPF15Q8N660 670 aa10.88□□□□□ -0.67
SMG6-202ENST00000354901 ERO1AQ96HE7 468 aa10.88□□□□□ -0.67
SMG6-202ENST00000354901 DEF6Q9H4E7 631 aa10.88□□□□□ -0.67
SMG6-202ENST00000354901 CWC15Q9P013 229 aaKnown RBP10.88□□□□□ -0.67
SMG6-202ENST00000354901 RRP15Q9Y3B9 282 aaKnown RBP10.88□□□□□ -0.67
SMG6-202ENST00000354901 JRKLQ9Y4A0 524 aa10.88□□□□□ -0.67
SMG6-202ENST00000354901 U3KPZ7 1027 aaPredicted RBP10.88□□□□□ -0.67
SMG6-202ENST00000354901 CT47A1Q5JQC4 288 aaPredicted RBP10.88□□□□□ -0.67
SMG6-202ENST00000354901 CBX8Q9HC52 389 aa10.88□□□□□ -0.67
SMG6-202ENST00000354901 PAG1Q9NWQ8 432 aa10.88□□□□□ -0.67
SMG6-202ENST00000354901 GEMIN8Q9NWZ8 242 aaKnown RBP10.88□□□□□ -0.67
SMG6-202ENST00000354901 KCNA4P22459 653 aa10.88□□□□□ -0.67
SMG6-202ENST00000354901 KBTBD3Q8NAB2 608 aa10.88□□□□□ -0.67
SMG6-202ENST00000354901 MNS1Q8NEH6 495 aa10.88□□□□□ -0.67
SMG6-202ENST00000354901 HAUS7Q99871 368 aa10.88□□□□□ -0.67
SMG6-202ENST00000354901 GPHNQ9NQX3 736 aaPredicted RBP10.88□□□□□ -0.67
SMG6-202ENST00000354901 SCN11AQ9UI33 1791 aa10.87□□□□□ -0.67
SMG6-202ENST00000354901 GOLGA6L19H0YKK7 550 aa10.87□□□□□ -0.67
SMG6-202ENST00000354901 IFIT1P09914 478 aaKnown RBP10.87□□□□□ -0.67
SMG6-202ENST00000354901 WASHC4Q2M389 1173 aa10.87□□□□□ -0.67
SMG6-202ENST00000354901 TOM1L2Q6ZVM7 507 aa10.87□□□□□ -0.67
SMG6-202ENST00000354901 PLBD2Q8NHP8 589 aa10.87□□□□□ -0.67
SMG6-202ENST00000354901 PLA2G4AP47712 749 aa10.87□□□□□ -0.67
SMG6-202ENST00000354901 OTUD7BQ6GQQ9 843 aa10.87□□□□□ -0.67
SMG6-202ENST00000354901 PSEN1P49768 467 aa10.86□□□□□ -0.67
SMG6-202ENST00000354901 ZNF165P49910 485 aa10.86□□□□□ -0.67
SMG6-202ENST00000354901 DNAJC21Q5F1R6 531 aaKnown RBP10.86□□□□□ -0.67
SMG6-202ENST00000354901 UBXN4Q92575 508 aa10.86□□□□□ -0.67
SMG6-202ENST00000354901 AHDC1Q5TGY3 1603 aaPredicted RBP10.86□□□□□ -0.67
SMG6-202ENST00000354901 PTPDC1A2A3K4 754 aa10.86□□□□□ -0.67
SMG6-202ENST00000354901 ZNF75DP51815 510 aa10.86□□□□□ -0.67
SMG6-202ENST00000354901 STRN4Q9NRL3 753 aa10.86□□□□□ -0.67
SMG6-202ENST00000354901 CWC25Q9NXE8 425 aaPredicted RBP10.86□□□□□ -0.67
SMG6-202ENST00000354901 MRC1P22897 1456 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms